Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04435

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04434 and MPMX19_04435 are separated by 1 nucleotidesMPMX19_04435 and MPMX19_04436 are separated by 260 nucleotides MPMX19_04434: MPMX19_04434 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 798,938 to 799,813 _04434 MPMX19_04435: MPMX19_04435 - Succinate--CoA ligase [ADP-forming] subunit beta, at 799,815 to 801,014 _04435 MPMX19_04436: MPMX19_04436 - Formyl-CoA:oxalate CoA-transferase, at 801,275 to 802,549 _04436 Position (kb) 799 800 801 802Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 798.876 kb on + strandat 798.877 kb on - strandat 798.877 kb on - strandat 798.877 kb on - strandat 798.965 kb on - strandat 798.965 kb on - strandat 798.965 kb on - strandat 798.965 kb on - strandat 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.599 kb on + strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.600 kb on - strand, within MPMX19_04434at 799.723 kb on - strand, within MPMX19_04434at 800.152 kb on + strand, within MPMX19_04435at 800.153 kb on - strand, within MPMX19_04435at 800.153 kb on - strand, within MPMX19_04435at 800.153 kb on - strand, within MPMX19_04435at 800.153 kb on - strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.233 kb on + strand, within MPMX19_04435at 800.435 kb on - strand, within MPMX19_04435at 800.435 kb on - strand, within MPMX19_04435at 800.435 kb on - strand, within MPMX19_04435at 800.435 kb on - strand, within MPMX19_04435at 800.516 kb on - strand, within MPMX19_04435at 800.516 kb on - strand, within MPMX19_04435at 800.516 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.663 kb on - strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.698 kb on + strand, within MPMX19_04435at 800.971 kb on + strandat 800.998 kb on + strandat 800.998 kb on + strandat 800.998 kb on + strandat 800.999 kb on - strandat 801.181 kb on + strandat 801.276 kb on + strandat 801.276 kb on + strandat 801.276 kb on + strandat 801.277 kb on - strandat 801.277 kb on - strandat 801.277 kb on - strandat 801.277 kb on - strandat 801.456 kb on + strand, within MPMX19_04436at 801.456 kb on + strand, within MPMX19_04436at 801.456 kb on + strand, within MPMX19_04436at 801.456 kb on + strand, within MPMX19_04436at 801.457 kb on - strand, within MPMX19_04436at 801.457 kb on - strand, within MPMX19_04436at 801.504 kb on + strand, within MPMX19_04436at 801.504 kb on + strand, within MPMX19_04436at 801.504 kb on + strand, within MPMX19_04436at 801.504 kb on + strand, within MPMX19_04436at 801.505 kb on - strand, within MPMX19_04436at 801.564 kb on + strand, within MPMX19_04436at 801.564 kb on + strand, within MPMX19_04436at 801.564 kb on + strand, within MPMX19_04436at 801.564 kb on + strand, within MPMX19_04436at 801.564 kb on + strand, within MPMX19_04436at 801.564 kb on + strand, within MPMX19_04436at 801.564 kb on + strand, within MPMX19_04436at 801.564 kb on + strand, within MPMX19_04436at 801.564 kb on + strand, within MPMX19_04436at 801.564 kb on + strand, within MPMX19_04436at 801.564 kb on + strand, within MPMX19_04436at 801.565 kb on - strand, within MPMX19_04436at 801.565 kb on - strand, within MPMX19_04436at 801.565 kb on - strand, within MPMX19_04436at 801.565 kb on - strand, within MPMX19_04436at 801.565 kb on - strand, within MPMX19_04436at 801.565 kb on - strand, within MPMX19_04436at 801.565 kb on - strand, within MPMX19_04436at 801.565 kb on - strand, within MPMX19_04436at 801.565 kb on - strand, within MPMX19_04436at 801.565 kb on - strand, within MPMX19_04436at 801.672 kb on + strand, within MPMX19_04436at 801.672 kb on + strand, within MPMX19_04436at 801.672 kb on + strand, within MPMX19_04436at 801.672 kb on + strand, within MPMX19_04436at 801.673 kb on - strand, within MPMX19_04436at 801.673 kb on - strand, within MPMX19_04436at 801.673 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.751 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.757 kb on - strand, within MPMX19_04436at 801.868 kb on - strand, within MPMX19_04436at 801.876 kb on + strand, within MPMX19_04436at 801.876 kb on + strand, within MPMX19_04436at 801.876 kb on + strand, within MPMX19_04436at 801.876 kb on + strand, within MPMX19_04436at 801.999 kb on + strand, within MPMX19_04436at 801.999 kb on + strand, within MPMX19_04436at 801.999 kb on + strand, within MPMX19_04436at 801.999 kb on + strand, within MPMX19_04436at 801.999 kb on + strand, within MPMX19_04436at 801.999 kb on + strand, within MPMX19_04436at 801.999 kb on + strand, within MPMX19_04436at 802.000 kb on - strand, within MPMX19_04436at 802.000 kb on - strand, within MPMX19_04436at 802.000 kb on - strand, within MPMX19_04436at 802.000 kb on - strand, within MPMX19_04436at 802.000 kb on - strand, within MPMX19_04436at 802.000 kb on - strand, within MPMX19_04436at 802.000 kb on - strand, within MPMX19_04436

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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798,876 + -0.3
798,877 - +0.0
798,877 - -1.1
798,877 - -0.6
798,965 - -0.6
798,965 - -0.4
798,965 - -0.7
798,965 - +0.1
799,599 + MPMX19_04434 0.75 -0.6
799,599 + MPMX19_04434 0.75 -0.7
799,599 + MPMX19_04434 0.75 +0.7
799,599 + MPMX19_04434 0.75 -0.6
799,599 + MPMX19_04434 0.75 -0.1
799,599 + MPMX19_04434 0.75 -0.9
799,599 + MPMX19_04434 0.75 +0.0
799,599 + MPMX19_04434 0.75 +1.4
799,600 - MPMX19_04434 0.76 +0.4
799,600 - MPMX19_04434 0.76 -0.6
799,600 - MPMX19_04434 0.76 -1.2
799,600 - MPMX19_04434 0.76 -0.4
799,600 - MPMX19_04434 0.76 -0.4
799,600 - MPMX19_04434 0.76 -1.8
799,600 - MPMX19_04434 0.76 +0.5
799,600 - MPMX19_04434 0.76 -0.7
799,600 - MPMX19_04434 0.76 -0.8
799,600 - MPMX19_04434 0.76 -0.7
799,723 - MPMX19_04434 0.90 +0.0
800,152 + MPMX19_04435 0.28 +0.6
800,153 - MPMX19_04435 0.28 -3.0
800,153 - MPMX19_04435 0.28 -1.3
800,153 - MPMX19_04435 0.28 +1.4
800,153 - MPMX19_04435 0.28 -0.7
800,233 + MPMX19_04435 0.35 +0.2
800,233 + MPMX19_04435 0.35 -1.0
800,233 + MPMX19_04435 0.35 -0.4
800,233 + MPMX19_04435 0.35 -0.6
800,233 + MPMX19_04435 0.35 -2.3
800,233 + MPMX19_04435 0.35 -0.6
800,233 + MPMX19_04435 0.35 +0.4
800,233 + MPMX19_04435 0.35 -2.1
800,435 - MPMX19_04435 0.52 -0.2
800,435 - MPMX19_04435 0.52 -0.1
800,435 - MPMX19_04435 0.52 -0.3
800,435 - MPMX19_04435 0.52 -0.9
800,516 - MPMX19_04435 0.58 -0.3
800,516 - MPMX19_04435 0.58 +0.2
800,516 - MPMX19_04435 0.58 -0.1
800,663 - MPMX19_04435 0.71 -1.0
800,663 - MPMX19_04435 0.71 -0.7
800,663 - MPMX19_04435 0.71 +0.2
800,663 - MPMX19_04435 0.71 -0.1
800,663 - MPMX19_04435 0.71 -1.5
800,663 - MPMX19_04435 0.71 -0.7
800,663 - MPMX19_04435 0.71 -2.5
800,663 - MPMX19_04435 0.71 -0.1
800,663 - MPMX19_04435 0.71 -1.4
800,663 - MPMX19_04435 0.71 +0.6
800,663 - MPMX19_04435 0.71 -0.6
800,698 + MPMX19_04435 0.74 +0.9
800,698 + MPMX19_04435 0.74 -1.4
800,698 + MPMX19_04435 0.74 -1.1
800,698 + MPMX19_04435 0.74 +1.0
800,698 + MPMX19_04435 0.74 +0.7
800,698 + MPMX19_04435 0.74 +0.6
800,698 + MPMX19_04435 0.74 +0.2
800,698 + MPMX19_04435 0.74 -0.3
800,698 + MPMX19_04435 0.74 -1.0
800,971 + -1.4
800,998 + -1.5
800,998 + -1.3
800,998 + -1.1
800,999 - +1.8
801,181 + -0.8
801,276 + -0.2
801,276 + -0.1
801,276 + +0.2
801,277 - -0.8
801,277 - -0.6
801,277 - +0.1
801,277 - -1.7
801,456 + MPMX19_04436 0.14 -0.7
801,456 + MPMX19_04436 0.14 +1.2
801,456 + MPMX19_04436 0.14 -0.7
801,456 + MPMX19_04436 0.14 -0.6
801,457 - MPMX19_04436 0.14 -0.5
801,457 - MPMX19_04436 0.14 +0.4
801,504 + MPMX19_04436 0.18 +1.0
801,504 + MPMX19_04436 0.18 -1.5
801,504 + MPMX19_04436 0.18 -0.1
801,504 + MPMX19_04436 0.18 -2.0
801,505 - MPMX19_04436 0.18 -1.3
801,564 + MPMX19_04436 0.23 -1.1
801,564 + MPMX19_04436 0.23 +0.7
801,564 + MPMX19_04436 0.23 -1.0
801,564 + MPMX19_04436 0.23 -1.4
801,564 + MPMX19_04436 0.23 -1.3
801,564 + MPMX19_04436 0.23 +0.2
801,564 + MPMX19_04436 0.23 -1.1
801,564 + MPMX19_04436 0.23 +0.4
801,564 + MPMX19_04436 0.23 +0.5
801,564 + MPMX19_04436 0.23 -0.1
801,564 + MPMX19_04436 0.23 -2.2
801,565 - MPMX19_04436 0.23 -0.1
801,565 - MPMX19_04436 0.23 -1.1
801,565 - MPMX19_04436 0.23 +0.5
801,565 - MPMX19_04436 0.23 -0.6
801,565 - MPMX19_04436 0.23 +1.1
801,565 - MPMX19_04436 0.23 +0.7
801,565 - MPMX19_04436 0.23 -0.0
801,565 - MPMX19_04436 0.23 +0.2
801,565 - MPMX19_04436 0.23 -1.5
801,565 - MPMX19_04436 0.23 -1.2
801,672 + MPMX19_04436 0.31 -0.5
801,672 + MPMX19_04436 0.31 +0.8
801,672 + MPMX19_04436 0.31 -0.9
801,672 + MPMX19_04436 0.31 -0.8
801,673 - MPMX19_04436 0.31 +0.0
801,673 - MPMX19_04436 0.31 -1.2
801,673 - MPMX19_04436 0.31 +0.2
801,751 - MPMX19_04436 0.37 -0.7
801,751 - MPMX19_04436 0.37 +0.6
801,751 - MPMX19_04436 0.37 -1.0
801,751 - MPMX19_04436 0.37 -1.3
801,751 - MPMX19_04436 0.37 -1.1
801,751 - MPMX19_04436 0.37 -1.1
801,751 - MPMX19_04436 0.37 -1.5
801,751 - MPMX19_04436 0.37 +0.7
801,751 - MPMX19_04436 0.37 -0.4
801,751 - MPMX19_04436 0.37 +0.0
801,751 - MPMX19_04436 0.37 -1.4
801,751 - MPMX19_04436 0.37 -1.5
801,751 - MPMX19_04436 0.37 +1.8
801,751 - MPMX19_04436 0.37 -1.0
801,751 - MPMX19_04436 0.37 +2.2
801,751 - MPMX19_04436 0.37 +0.0
801,751 - MPMX19_04436 0.37 +1.2
801,751 - MPMX19_04436 0.37 -2.1
801,751 - MPMX19_04436 0.37 -0.8
801,751 - MPMX19_04436 0.37 -1.4
801,751 - MPMX19_04436 0.37 -0.1
801,757 - MPMX19_04436 0.38 -1.1
801,757 - MPMX19_04436 0.38 -0.7
801,757 - MPMX19_04436 0.38 -0.0
801,757 - MPMX19_04436 0.38 -1.6
801,757 - MPMX19_04436 0.38 -1.5
801,757 - MPMX19_04436 0.38 -0.6
801,757 - MPMX19_04436 0.38 +0.0
801,757 - MPMX19_04436 0.38 -0.4
801,757 - MPMX19_04436 0.38 +0.6
801,757 - MPMX19_04436 0.38 -1.4
801,757 - MPMX19_04436 0.38 -1.5
801,757 - MPMX19_04436 0.38 +0.2
801,757 - MPMX19_04436 0.38 -0.1
801,757 - MPMX19_04436 0.38 +0.6
801,868 - MPMX19_04436 0.47 -0.9
801,876 + MPMX19_04436 0.47 +0.7
801,876 + MPMX19_04436 0.47 -1.9
801,876 + MPMX19_04436 0.47 +0.3
801,876 + MPMX19_04436 0.47 -0.3
801,999 + MPMX19_04436 0.57 -2.0
801,999 + MPMX19_04436 0.57 +0.9
801,999 + MPMX19_04436 0.57 +1.3
801,999 + MPMX19_04436 0.57 +0.4
801,999 + MPMX19_04436 0.57 +0.3
801,999 + MPMX19_04436 0.57 +0.2
801,999 + MPMX19_04436 0.57 +0.4
802,000 - MPMX19_04436 0.57 -2.3
802,000 - MPMX19_04436 0.57 -1.5
802,000 - MPMX19_04436 0.57 +0.2
802,000 - MPMX19_04436 0.57 -0.1
802,000 - MPMX19_04436 0.57 -0.9
802,000 - MPMX19_04436 0.57 -1.8
802,000 - MPMX19_04436 0.57 -1.3

Or see this region's nucleotide sequence