Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04434 and MPMX19_04435 are separated by 1 nucleotides MPMX19_04435 and MPMX19_04436 are separated by 260 nucleotides
MPMX19_04434: MPMX19_04434 - Succinate--CoA ligase [ADP-forming] subunit alpha, at 798,938 to 799,813
_04434
MPMX19_04435: MPMX19_04435 - Succinate--CoA ligase [ADP-forming] subunit beta, at 799,815 to 801,014
_04435
MPMX19_04436: MPMX19_04436 - Formyl-CoA:oxalate CoA-transferase, at 801,275 to 802,549
_04436
Position (kb)
799
800
801
802 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 798.876 kb on + strand at 798.877 kb on - strand at 798.877 kb on - strand at 798.877 kb on - strand at 798.965 kb on - strand at 798.965 kb on - strand at 798.965 kb on - strand at 798.965 kb on - strand at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.599 kb on + strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.600 kb on - strand, within MPMX19_04434 at 799.723 kb on - strand, within MPMX19_04434 at 800.152 kb on + strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.153 kb on - strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.233 kb on + strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.435 kb on - strand, within MPMX19_04435 at 800.516 kb on - strand, within MPMX19_04435 at 800.516 kb on - strand, within MPMX19_04435 at 800.516 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.663 kb on - strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.698 kb on + strand, within MPMX19_04435 at 800.971 kb on + strand at 800.998 kb on + strand at 800.998 kb on + strand at 800.998 kb on + strand at 800.999 kb on - strand at 801.181 kb on + strand at 801.276 kb on + strand at 801.276 kb on + strand at 801.276 kb on + strand at 801.277 kb on - strand at 801.277 kb on - strand at 801.277 kb on - strand at 801.277 kb on - strand at 801.456 kb on + strand, within MPMX19_04436 at 801.456 kb on + strand, within MPMX19_04436 at 801.456 kb on + strand, within MPMX19_04436 at 801.456 kb on + strand, within MPMX19_04436 at 801.457 kb on - strand, within MPMX19_04436 at 801.457 kb on - strand, within MPMX19_04436 at 801.504 kb on + strand, within MPMX19_04436 at 801.504 kb on + strand, within MPMX19_04436 at 801.504 kb on + strand, within MPMX19_04436 at 801.504 kb on + strand, within MPMX19_04436 at 801.505 kb on - strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.564 kb on + strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.565 kb on - strand, within MPMX19_04436 at 801.672 kb on + strand, within MPMX19_04436 at 801.672 kb on + strand, within MPMX19_04436 at 801.672 kb on + strand, within MPMX19_04436 at 801.672 kb on + strand, within MPMX19_04436 at 801.673 kb on - strand, within MPMX19_04436 at 801.673 kb on - strand, within MPMX19_04436 at 801.673 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.751 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.757 kb on - strand, within MPMX19_04436 at 801.868 kb on - strand, within MPMX19_04436 at 801.876 kb on + strand, within MPMX19_04436 at 801.876 kb on + strand, within MPMX19_04436 at 801.876 kb on + strand, within MPMX19_04436 at 801.876 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 801.999 kb on + strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436 at 802.000 kb on - strand, within MPMX19_04436
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 798,876 + -0.3 798,877 - +0.0 798,877 - -1.1 798,877 - -0.6 798,965 - -0.6 798,965 - -0.4 798,965 - -0.7 798,965 - +0.1 799,599 + MPMX19_04434 0.75 -0.6 799,599 + MPMX19_04434 0.75 -0.7 799,599 + MPMX19_04434 0.75 +0.7 799,599 + MPMX19_04434 0.75 -0.6 799,599 + MPMX19_04434 0.75 -0.1 799,599 + MPMX19_04434 0.75 -0.9 799,599 + MPMX19_04434 0.75 +0.0 799,599 + MPMX19_04434 0.75 +1.4 799,600 - MPMX19_04434 0.76 +0.4 799,600 - MPMX19_04434 0.76 -0.6 799,600 - MPMX19_04434 0.76 -1.2 799,600 - MPMX19_04434 0.76 -0.4 799,600 - MPMX19_04434 0.76 -0.4 799,600 - MPMX19_04434 0.76 -1.8 799,600 - MPMX19_04434 0.76 +0.5 799,600 - MPMX19_04434 0.76 -0.7 799,600 - MPMX19_04434 0.76 -0.8 799,600 - MPMX19_04434 0.76 -0.7 799,723 - MPMX19_04434 0.90 +0.0 800,152 + MPMX19_04435 0.28 +0.6 800,153 - MPMX19_04435 0.28 -3.0 800,153 - MPMX19_04435 0.28 -1.3 800,153 - MPMX19_04435 0.28 +1.4 800,153 - MPMX19_04435 0.28 -0.7 800,233 + MPMX19_04435 0.35 +0.2 800,233 + MPMX19_04435 0.35 -1.0 800,233 + MPMX19_04435 0.35 -0.4 800,233 + MPMX19_04435 0.35 -0.6 800,233 + MPMX19_04435 0.35 -2.3 800,233 + MPMX19_04435 0.35 -0.6 800,233 + MPMX19_04435 0.35 +0.4 800,233 + MPMX19_04435 0.35 -2.1 800,435 - MPMX19_04435 0.52 -0.2 800,435 - MPMX19_04435 0.52 -0.1 800,435 - MPMX19_04435 0.52 -0.3 800,435 - MPMX19_04435 0.52 -0.9 800,516 - MPMX19_04435 0.58 -0.3 800,516 - MPMX19_04435 0.58 +0.2 800,516 - MPMX19_04435 0.58 -0.1 800,663 - MPMX19_04435 0.71 -1.0 800,663 - MPMX19_04435 0.71 -0.7 800,663 - MPMX19_04435 0.71 +0.2 800,663 - MPMX19_04435 0.71 -0.1 800,663 - MPMX19_04435 0.71 -1.5 800,663 - MPMX19_04435 0.71 -0.7 800,663 - MPMX19_04435 0.71 -2.5 800,663 - MPMX19_04435 0.71 -0.1 800,663 - MPMX19_04435 0.71 -1.4 800,663 - MPMX19_04435 0.71 +0.6 800,663 - MPMX19_04435 0.71 -0.6 800,698 + MPMX19_04435 0.74 +0.9 800,698 + MPMX19_04435 0.74 -1.4 800,698 + MPMX19_04435 0.74 -1.1 800,698 + MPMX19_04435 0.74 +1.0 800,698 + MPMX19_04435 0.74 +0.7 800,698 + MPMX19_04435 0.74 +0.6 800,698 + MPMX19_04435 0.74 +0.2 800,698 + MPMX19_04435 0.74 -0.3 800,698 + MPMX19_04435 0.74 -1.0 800,971 + -1.4 800,998 + -1.5 800,998 + -1.3 800,998 + -1.1 800,999 - +1.8 801,181 + -0.8 801,276 + -0.2 801,276 + -0.1 801,276 + +0.2 801,277 - -0.8 801,277 - -0.6 801,277 - +0.1 801,277 - -1.7 801,456 + MPMX19_04436 0.14 -0.7 801,456 + MPMX19_04436 0.14 +1.2 801,456 + MPMX19_04436 0.14 -0.7 801,456 + MPMX19_04436 0.14 -0.6 801,457 - MPMX19_04436 0.14 -0.5 801,457 - MPMX19_04436 0.14 +0.4 801,504 + MPMX19_04436 0.18 +1.0 801,504 + MPMX19_04436 0.18 -1.5 801,504 + MPMX19_04436 0.18 -0.1 801,504 + MPMX19_04436 0.18 -2.0 801,505 - MPMX19_04436 0.18 -1.3 801,564 + MPMX19_04436 0.23 -1.1 801,564 + MPMX19_04436 0.23 +0.7 801,564 + MPMX19_04436 0.23 -1.0 801,564 + MPMX19_04436 0.23 -1.4 801,564 + MPMX19_04436 0.23 -1.3 801,564 + MPMX19_04436 0.23 +0.2 801,564 + MPMX19_04436 0.23 -1.1 801,564 + MPMX19_04436 0.23 +0.4 801,564 + MPMX19_04436 0.23 +0.5 801,564 + MPMX19_04436 0.23 -0.1 801,564 + MPMX19_04436 0.23 -2.2 801,565 - MPMX19_04436 0.23 -0.1 801,565 - MPMX19_04436 0.23 -1.1 801,565 - MPMX19_04436 0.23 +0.5 801,565 - MPMX19_04436 0.23 -0.6 801,565 - MPMX19_04436 0.23 +1.1 801,565 - MPMX19_04436 0.23 +0.7 801,565 - MPMX19_04436 0.23 -0.0 801,565 - MPMX19_04436 0.23 +0.2 801,565 - MPMX19_04436 0.23 -1.5 801,565 - MPMX19_04436 0.23 -1.2 801,672 + MPMX19_04436 0.31 -0.5 801,672 + MPMX19_04436 0.31 +0.8 801,672 + MPMX19_04436 0.31 -0.9 801,672 + MPMX19_04436 0.31 -0.8 801,673 - MPMX19_04436 0.31 +0.0 801,673 - MPMX19_04436 0.31 -1.2 801,673 - MPMX19_04436 0.31 +0.2 801,751 - MPMX19_04436 0.37 -0.7 801,751 - MPMX19_04436 0.37 +0.6 801,751 - MPMX19_04436 0.37 -1.0 801,751 - MPMX19_04436 0.37 -1.3 801,751 - MPMX19_04436 0.37 -1.1 801,751 - MPMX19_04436 0.37 -1.1 801,751 - MPMX19_04436 0.37 -1.5 801,751 - MPMX19_04436 0.37 +0.7 801,751 - MPMX19_04436 0.37 -0.4 801,751 - MPMX19_04436 0.37 +0.0 801,751 - MPMX19_04436 0.37 -1.4 801,751 - MPMX19_04436 0.37 -1.5 801,751 - MPMX19_04436 0.37 +1.8 801,751 - MPMX19_04436 0.37 -1.0 801,751 - MPMX19_04436 0.37 +2.2 801,751 - MPMX19_04436 0.37 +0.0 801,751 - MPMX19_04436 0.37 +1.2 801,751 - MPMX19_04436 0.37 -2.1 801,751 - MPMX19_04436 0.37 -0.8 801,751 - MPMX19_04436 0.37 -1.4 801,751 - MPMX19_04436 0.37 -0.1 801,757 - MPMX19_04436 0.38 -1.1 801,757 - MPMX19_04436 0.38 -0.7 801,757 - MPMX19_04436 0.38 -0.0 801,757 - MPMX19_04436 0.38 -1.6 801,757 - MPMX19_04436 0.38 -1.5 801,757 - MPMX19_04436 0.38 -0.6 801,757 - MPMX19_04436 0.38 +0.0 801,757 - MPMX19_04436 0.38 -0.4 801,757 - MPMX19_04436 0.38 +0.6 801,757 - MPMX19_04436 0.38 -1.4 801,757 - MPMX19_04436 0.38 -1.5 801,757 - MPMX19_04436 0.38 +0.2 801,757 - MPMX19_04436 0.38 -0.1 801,757 - MPMX19_04436 0.38 +0.6 801,868 - MPMX19_04436 0.47 -0.9 801,876 + MPMX19_04436 0.47 +0.7 801,876 + MPMX19_04436 0.47 -1.9 801,876 + MPMX19_04436 0.47 +0.3 801,876 + MPMX19_04436 0.47 -0.3 801,999 + MPMX19_04436 0.57 -2.0 801,999 + MPMX19_04436 0.57 +0.9 801,999 + MPMX19_04436 0.57 +1.3 801,999 + MPMX19_04436 0.57 +0.4 801,999 + MPMX19_04436 0.57 +0.3 801,999 + MPMX19_04436 0.57 +0.2 801,999 + MPMX19_04436 0.57 +0.4 802,000 - MPMX19_04436 0.57 -2.3 802,000 - MPMX19_04436 0.57 -1.5 802,000 - MPMX19_04436 0.57 +0.2 802,000 - MPMX19_04436 0.57 -0.1 802,000 - MPMX19_04436 0.57 -0.9 802,000 - MPMX19_04436 0.57 -1.8 802,000 - MPMX19_04436 0.57 -1.3
Or see this region's nucleotide sequence