Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04423 and MPMX19_04424 are separated by 947 nucleotides MPMX19_04424 and MPMX19_04425 are separated by 28 nucleotides
MPMX19_04423: MPMX19_04423 - hypothetical protein, at 787,895 to 788,398
_04423
MPMX19_04424: MPMX19_04424 - Phyllosphere-induced regulator PhyR, at 789,346 to 790,149
_04424
MPMX19_04425: MPMX19_04425 - Formyltetrahydrofolate deformylase, at 790,178 to 791,044
_04425
Position (kb) 789
790
791 Strain fitness (log2 ratio) -2
-1
0
1 at 788.548 kb on + strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.695 kb on + strand at 788.695 kb on + strand at 788.695 kb on + strand at 788.696 kb on - strand at 788.696 kb on - strand at 788.913 kb on + strand at 788.914 kb on - strand at 788.914 kb on - strand at 788.914 kb on - strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.940 kb on - strand at 788.940 kb on - strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.979 kb on - strand at 789.023 kb on + strand at 789.023 kb on + strand at 789.024 kb on - strand at 789.024 kb on - strand at 789.026 kb on + strand at 789.026 kb on + strand at 789.027 kb on - strand at 789.053 kb on + strand at 789.062 kb on + strand at 789.087 kb on - strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.273 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.385 kb on + strand at 789.386 kb on - strand at 789.463 kb on + strand, within MPMX19_04424 at 789.463 kb on + strand, within MPMX19_04424 at 789.464 kb on - strand, within MPMX19_04424 at 789.464 kb on - strand, within MPMX19_04424 at 789.464 kb on - strand, within MPMX19_04424 at 789.523 kb on + strand, within MPMX19_04424 at 789.523 kb on + strand, within MPMX19_04424 at 789.524 kb on - strand, within MPMX19_04424 at 789.524 kb on - strand, within MPMX19_04424 at 789.580 kb on + strand, within MPMX19_04424 at 789.580 kb on + strand, within MPMX19_04424 at 789.580 kb on + strand, within MPMX19_04424 at 789.581 kb on - strand, within MPMX19_04424 at 789.581 kb on - strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.634 kb on + strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.635 kb on - strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.786 kb on + strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.787 kb on - strand, within MPMX19_04424 at 789.797 kb on - strand, within MPMX19_04424 at 790.179 kb on + strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand at 791.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 788,548 + +0.4 788,560 - -1.5 788,560 - -1.9 788,560 - +0.2 788,560 - +1.0 788,628 - +0.6 788,628 - +0.2 788,628 - -0.1 788,628 - -1.5 788,628 - -1.6 788,628 - -0.6 788,628 - -0.1 788,639 + -2.3 788,639 + +0.2 788,639 + -1.5 788,639 + -0.5 788,639 + -0.4 788,640 - -0.4 788,640 - +1.2 788,640 - -0.9 788,640 - -1.4 788,640 - -0.9 788,640 - -1.8 788,695 + -1.4 788,695 + -1.3 788,695 + +0.8 788,696 - -1.0 788,696 - -0.4 788,913 + -0.3 788,914 - -1.2 788,914 - +0.6 788,914 - +0.1 788,921 + -0.3 788,921 + -0.6 788,921 + -1.3 788,921 + -1.2 788,921 + +0.5 788,921 + +0.2 788,921 + -0.5 788,921 + -1.1 788,921 + +0.6 788,921 + +1.0 788,922 - -1.5 788,922 - +1.0 788,922 - -1.3 788,922 - -0.8 788,939 + -1.1 788,939 + +0.1 788,939 + -1.1 788,939 + -0.7 788,939 + +0.2 788,940 - -0.4 788,940 - -1.6 788,963 + +0.6 788,963 + +0.2 788,963 + -0.5 788,963 + -0.5 788,963 + -0.1 788,964 - +0.4 788,964 - +0.2 788,964 - +0.0 788,964 - +0.2 788,978 + +0.2 788,978 + -1.3 788,978 + -1.6 788,978 + +0.6 788,979 - -1.0 789,023 + -2.2 789,023 + -0.1 789,024 - +0.2 789,024 - -1.6 789,026 + -0.1 789,026 + -1.3 789,027 - -1.4 789,053 + -1.0 789,062 + -1.9 789,087 - +0.4 789,105 + -0.1 789,105 + -0.6 789,105 + -2.6 789,105 + -1.0 789,106 - -0.9 789,106 - +0.5 789,106 - -0.4 789,106 - -0.7 789,273 + -1.0 789,355 + -1.3 789,355 + -0.2 789,355 + +1.2 789,355 + -0.8 789,355 + +0.1 789,355 + +0.1 789,355 + -0.8 789,355 + -1.3 789,355 + -1.0 789,355 + +0.7 789,355 + +0.6 789,355 + -1.7 789,355 + -1.0 789,355 + -0.6 789,356 - -0.8 789,356 - +0.4 789,356 - +0.7 789,356 - +0.6 789,356 - -1.0 789,385 + -0.7 789,386 - -0.9 789,463 + MPMX19_04424 0.15 +0.0 789,463 + MPMX19_04424 0.15 -0.3 789,464 - MPMX19_04424 0.15 -2.4 789,464 - MPMX19_04424 0.15 +0.6 789,464 - MPMX19_04424 0.15 +0.4 789,523 + MPMX19_04424 0.22 -0.5 789,523 + MPMX19_04424 0.22 +0.4 789,524 - MPMX19_04424 0.22 -0.5 789,524 - MPMX19_04424 0.22 -0.8 789,580 + MPMX19_04424 0.29 -1.1 789,580 + MPMX19_04424 0.29 +1.0 789,580 + MPMX19_04424 0.29 -0.9 789,581 - MPMX19_04424 0.29 +0.8 789,581 - MPMX19_04424 0.29 -0.4 789,634 + MPMX19_04424 0.36 -0.2 789,634 + MPMX19_04424 0.36 +0.1 789,634 + MPMX19_04424 0.36 -0.1 789,634 + MPMX19_04424 0.36 -0.9 789,634 + MPMX19_04424 0.36 -0.8 789,635 - MPMX19_04424 0.36 +0.8 789,635 - MPMX19_04424 0.36 -0.1 789,635 - MPMX19_04424 0.36 -0.8 789,635 - MPMX19_04424 0.36 +0.3 789,635 - MPMX19_04424 0.36 -0.8 789,635 - MPMX19_04424 0.36 -2.0 789,635 - MPMX19_04424 0.36 -0.5 789,635 - MPMX19_04424 0.36 -0.6 789,786 + MPMX19_04424 0.55 -1.4 789,786 + MPMX19_04424 0.55 -0.0 789,786 + MPMX19_04424 0.55 -1.5 789,786 + MPMX19_04424 0.55 -1.1 789,787 - MPMX19_04424 0.55 -1.3 789,787 - MPMX19_04424 0.55 +1.0 789,787 - MPMX19_04424 0.55 -0.4 789,787 - MPMX19_04424 0.55 -0.5 789,787 - MPMX19_04424 0.55 +0.5 789,787 - MPMX19_04424 0.55 -0.1 789,787 - MPMX19_04424 0.55 -0.1 789,797 - MPMX19_04424 0.56 -0.1 790,179 + +0.2 791,064 - -0.1 791,064 - -1.0 791,064 - +0.6 791,064 - -1.7 791,064 - +1.2 791,064 - -1.3
Or see this region's nucleotide sequence