Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04422 and MPMX19_04423 are separated by 223 nucleotides MPMX19_04423 and MPMX19_04424 are separated by 947 nucleotides
MPMX19_04422: MPMX19_04422 - Benzoate--CoA ligase, at 785,905 to 787,671
_04422
MPMX19_04423: MPMX19_04423 - hypothetical protein, at 787,895 to 788,398
_04423
MPMX19_04424: MPMX19_04424 - Phyllosphere-induced regulator PhyR, at 789,346 to 790,149
_04424
Position (kb) 787
788
789 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 787.283 kb on + strand, within MPMX19_04422 at 787.283 kb on + strand, within MPMX19_04422 at 787.337 kb on + strand, within MPMX19_04422 at 787.337 kb on + strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.443 kb on - strand, within MPMX19_04422 at 787.639 kb on - strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.743 kb on + strand at 787.743 kb on + strand at 787.743 kb on + strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.849 kb on + strand at 787.850 kb on - strand at 787.911 kb on + strand at 787.911 kb on + strand at 787.911 kb on + strand at 787.912 kb on - strand at 787.912 kb on - strand at 788.146 kb on - strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.548 kb on + strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.695 kb on + strand at 788.695 kb on + strand at 788.695 kb on + strand at 788.696 kb on - strand at 788.696 kb on - strand at 788.913 kb on + strand at 788.914 kb on - strand at 788.914 kb on - strand at 788.914 kb on - strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.921 kb on + strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.922 kb on - strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.939 kb on + strand at 788.940 kb on - strand at 788.940 kb on - strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.963 kb on + strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.964 kb on - strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.978 kb on + strand at 788.979 kb on - strand at 789.023 kb on + strand at 789.023 kb on + strand at 789.024 kb on - strand at 789.024 kb on - strand at 789.026 kb on + strand at 789.026 kb on + strand at 789.027 kb on - strand at 789.053 kb on + strand at 789.062 kb on + strand at 789.087 kb on - strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.105 kb on + strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.106 kb on - strand at 789.273 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.355 kb on + strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.356 kb on - strand at 789.385 kb on + strand at 789.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 787,283 + MPMX19_04422 0.78 -0.2 787,283 + MPMX19_04422 0.78 -1.4 787,337 + MPMX19_04422 0.81 +1.2 787,337 + MPMX19_04422 0.81 -0.6 787,338 - MPMX19_04422 0.81 -1.0 787,338 - MPMX19_04422 0.81 -0.1 787,338 - MPMX19_04422 0.81 -0.8 787,338 - MPMX19_04422 0.81 -1.5 787,338 - MPMX19_04422 0.81 -0.1 787,338 - MPMX19_04422 0.81 +0.2 787,338 - MPMX19_04422 0.81 -0.1 787,346 - MPMX19_04422 0.82 -0.6 787,346 - MPMX19_04422 0.82 +0.0 787,346 - MPMX19_04422 0.82 +0.1 787,346 - MPMX19_04422 0.82 -0.8 787,346 - MPMX19_04422 0.82 -0.1 787,443 - MPMX19_04422 0.87 -3.3 787,639 - -0.8 787,730 + +1.8 787,730 + +0.1 787,730 + -2.1 787,730 + -0.8 787,730 + +1.0 787,730 + -0.8 787,731 - -1.8 787,731 - -1.4 787,731 - +0.2 787,731 - -0.9 787,731 - -0.9 787,731 - -1.9 787,741 + -1.2 787,741 + +3.2 787,741 + -1.1 787,741 + -1.5 787,741 + +0.9 787,741 + -1.4 787,742 - +0.6 787,742 - +1.2 787,742 - -1.1 787,742 - -0.0 787,742 - +0.2 787,742 - -0.4 787,742 - -1.1 787,742 - +0.4 787,742 - +0.6 787,742 - -0.6 787,743 + -0.3 787,743 + -0.8 787,743 + -0.4 787,744 - +0.1 787,744 - -1.7 787,744 - -1.0 787,744 - -0.8 787,744 - -0.2 787,849 + -0.7 787,850 - -1.5 787,911 + +1.0 787,911 + -0.6 787,911 + -2.0 787,912 - -1.4 787,912 - +0.9 788,146 - MPMX19_04423 0.50 +0.6 788,202 + MPMX19_04423 0.61 -1.3 788,202 + MPMX19_04423 0.61 +0.6 788,202 + MPMX19_04423 0.61 +0.1 788,202 + MPMX19_04423 0.61 +0.2 788,202 + MPMX19_04423 0.61 +0.4 788,202 + MPMX19_04423 0.61 -0.5 788,202 + MPMX19_04423 0.61 +0.0 788,202 + MPMX19_04423 0.61 -0.8 788,202 + MPMX19_04423 0.61 +0.9 788,203 - MPMX19_04423 0.61 -1.3 788,203 - MPMX19_04423 0.61 -0.2 788,203 - MPMX19_04423 0.61 +0.6 788,203 - MPMX19_04423 0.61 +0.1 788,203 - MPMX19_04423 0.61 +0.6 788,203 - MPMX19_04423 0.61 -0.3 788,203 - MPMX19_04423 0.61 -0.5 788,203 - MPMX19_04423 0.61 -1.8 788,203 - MPMX19_04423 0.61 -1.5 788,203 - MPMX19_04423 0.61 -0.4 788,203 - MPMX19_04423 0.61 -0.1 788,298 + MPMX19_04423 0.80 +1.2 788,298 + MPMX19_04423 0.80 -1.3 788,298 + MPMX19_04423 0.80 -0.1 788,298 + MPMX19_04423 0.80 -0.4 788,298 + MPMX19_04423 0.80 +0.3 788,298 + MPMX19_04423 0.80 +0.4 788,298 + MPMX19_04423 0.80 +0.7 788,298 + MPMX19_04423 0.80 -0.3 788,298 + MPMX19_04423 0.80 -1.3 788,298 + MPMX19_04423 0.80 -1.1 788,298 + MPMX19_04423 0.80 -0.1 788,298 + MPMX19_04423 0.80 -2.1 788,298 + MPMX19_04423 0.80 +0.8 788,299 - MPMX19_04423 0.80 +0.4 788,299 - MPMX19_04423 0.80 -1.0 788,299 - MPMX19_04423 0.80 -0.3 788,299 - MPMX19_04423 0.80 -0.1 788,299 - MPMX19_04423 0.80 -0.8 788,299 - MPMX19_04423 0.80 -0.1 788,548 + +0.4 788,560 - -1.5 788,560 - -1.9 788,560 - +0.2 788,560 - +1.0 788,628 - +0.6 788,628 - +0.2 788,628 - -0.1 788,628 - -1.5 788,628 - -1.6 788,628 - -0.6 788,628 - -0.1 788,639 + -2.3 788,639 + +0.2 788,639 + -1.5 788,639 + -0.5 788,639 + -0.4 788,640 - -0.4 788,640 - +1.2 788,640 - -0.9 788,640 - -1.4 788,640 - -0.9 788,640 - -1.8 788,695 + -1.4 788,695 + -1.3 788,695 + +0.8 788,696 - -1.0 788,696 - -0.4 788,913 + -0.3 788,914 - -1.2 788,914 - +0.6 788,914 - +0.1 788,921 + -0.3 788,921 + -0.6 788,921 + -1.3 788,921 + -1.2 788,921 + +0.5 788,921 + +0.2 788,921 + -0.5 788,921 + -1.1 788,921 + +0.6 788,921 + +1.0 788,922 - -1.5 788,922 - +1.0 788,922 - -1.3 788,922 - -0.8 788,939 + -1.1 788,939 + +0.1 788,939 + -1.1 788,939 + -0.7 788,939 + +0.2 788,940 - -0.4 788,940 - -1.6 788,963 + +0.6 788,963 + +0.2 788,963 + -0.5 788,963 + -0.5 788,963 + -0.1 788,964 - +0.4 788,964 - +0.2 788,964 - +0.0 788,964 - +0.2 788,978 + +0.2 788,978 + -1.3 788,978 + -1.6 788,978 + +0.6 788,979 - -1.0 789,023 + -2.2 789,023 + -0.1 789,024 - +0.2 789,024 - -1.6 789,026 + -0.1 789,026 + -1.3 789,027 - -1.4 789,053 + -1.0 789,062 + -1.9 789,087 - +0.4 789,105 + -0.1 789,105 + -0.6 789,105 + -2.6 789,105 + -1.0 789,106 - -0.9 789,106 - +0.5 789,106 - -0.4 789,106 - -0.7 789,273 + -1.0 789,355 + -1.3 789,355 + -0.2 789,355 + +1.2 789,355 + -0.8 789,355 + +0.1 789,355 + +0.1 789,355 + -0.8 789,355 + -1.3 789,355 + -1.0 789,355 + +0.7 789,355 + +0.6 789,355 + -1.7 789,355 + -1.0 789,355 + -0.6 789,356 - -0.8 789,356 - +0.4 789,356 - +0.7 789,356 - +0.6 789,356 - -1.0 789,385 + -0.7 789,386 - -0.9
Or see this region's nucleotide sequence