Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04420 and MPMX19_04421 are separated by 84 nucleotides MPMX19_04421 and MPMX19_04422 are separated by 7 nucleotides MPMX19_04422 and MPMX19_04423 are separated by 223 nucleotides
MPMX19_04420: MPMX19_04420 - hypothetical protein, at 783,987 to 784,937
_04420
MPMX19_04421: MPMX19_04421 - Chitooligosaccharide deacetylase ChbG, at 785,022 to 785,897
_04421
MPMX19_04422: MPMX19_04422 - Benzoate--CoA ligase, at 785,905 to 787,671
_04422
MPMX19_04423: MPMX19_04423 - hypothetical protein, at 787,895 to 788,398
_04423
Position (kb) 785
786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 785.067 kb on + strand at 785.067 kb on + strand at 785.068 kb on - strand at 785.068 kb on - strand at 785.314 kb on - strand, within MPMX19_04421 at 785.415 kb on + strand, within MPMX19_04421 at 785.415 kb on + strand, within MPMX19_04421 at 785.415 kb on + strand, within MPMX19_04421 at 785.415 kb on + strand, within MPMX19_04421 at 785.415 kb on + strand, within MPMX19_04421 at 785.415 kb on + strand, within MPMX19_04421 at 785.416 kb on - strand, within MPMX19_04421 at 785.416 kb on - strand, within MPMX19_04421 at 785.416 kb on - strand, within MPMX19_04421 at 785.416 kb on - strand, within MPMX19_04421 at 785.416 kb on - strand, within MPMX19_04421 at 785.416 kb on - strand, within MPMX19_04421 at 785.416 kb on - strand, within MPMX19_04421 at 785.416 kb on - strand, within MPMX19_04421 at 785.416 kb on - strand, within MPMX19_04421 at 785.417 kb on + strand, within MPMX19_04421 at 785.417 kb on + strand, within MPMX19_04421 at 785.418 kb on - strand, within MPMX19_04421 at 785.418 kb on - strand, within MPMX19_04421 at 785.418 kb on - strand, within MPMX19_04421 at 785.418 kb on - strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.499 kb on + strand, within MPMX19_04421 at 785.500 kb on - strand, within MPMX19_04421 at 785.500 kb on - strand, within MPMX19_04421 at 785.500 kb on - strand, within MPMX19_04421 at 785.500 kb on - strand, within MPMX19_04421 at 785.500 kb on - strand, within MPMX19_04421 at 785.500 kb on - strand, within MPMX19_04421 at 785.500 kb on - strand, within MPMX19_04421 at 785.649 kb on + strand, within MPMX19_04421 at 785.649 kb on + strand, within MPMX19_04421 at 785.649 kb on + strand, within MPMX19_04421 at 785.650 kb on - strand, within MPMX19_04421 at 785.650 kb on - strand, within MPMX19_04421 at 785.650 kb on - strand, within MPMX19_04421 at 785.811 kb on + strand at 785.811 kb on + strand at 785.811 kb on + strand at 785.811 kb on + strand at 785.812 kb on - strand at 785.812 kb on - strand at 785.812 kb on - strand at 785.812 kb on - strand at 785.812 kb on - strand at 785.812 kb on - strand at 785.812 kb on - strand at 785.817 kb on + strand at 785.817 kb on + strand at 785.817 kb on + strand at 785.817 kb on + strand at 785.817 kb on + strand at 785.817 kb on + strand at 785.818 kb on - strand at 785.818 kb on - strand at 785.818 kb on - strand at 785.818 kb on - strand at 785.818 kb on - strand at 785.906 kb on + strand at 785.906 kb on + strand at 785.906 kb on + strand at 785.907 kb on - strand at 785.907 kb on - strand at 785.907 kb on - strand at 785.907 kb on - strand at 786.011 kb on + strand at 786.011 kb on + strand at 786.012 kb on - strand at 786.017 kb on + strand at 786.018 kb on - strand at 786.212 kb on + strand, within MPMX19_04422 at 786.212 kb on + strand, within MPMX19_04422 at 786.212 kb on + strand, within MPMX19_04422 at 786.213 kb on - strand, within MPMX19_04422 at 786.317 kb on + strand, within MPMX19_04422 at 786.317 kb on + strand, within MPMX19_04422 at 786.317 kb on + strand, within MPMX19_04422 at 786.317 kb on + strand, within MPMX19_04422 at 786.318 kb on - strand, within MPMX19_04422 at 786.318 kb on - strand, within MPMX19_04422 at 786.318 kb on - strand, within MPMX19_04422 at 786.318 kb on - strand, within MPMX19_04422 at 786.318 kb on - strand, within MPMX19_04422 at 786.318 kb on - strand, within MPMX19_04422 at 786.344 kb on + strand, within MPMX19_04422 at 786.344 kb on + strand, within MPMX19_04422 at 786.345 kb on - strand, within MPMX19_04422 at 786.434 kb on + strand, within MPMX19_04422 at 786.435 kb on - strand, within MPMX19_04422 at 786.435 kb on - strand, within MPMX19_04422 at 786.435 kb on - strand, within MPMX19_04422 at 786.435 kb on - strand, within MPMX19_04422 at 787.283 kb on + strand, within MPMX19_04422 at 787.283 kb on + strand, within MPMX19_04422 at 787.337 kb on + strand, within MPMX19_04422 at 787.337 kb on + strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.338 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.346 kb on - strand, within MPMX19_04422 at 787.443 kb on - strand, within MPMX19_04422 at 787.639 kb on - strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.730 kb on + strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.731 kb on - strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.741 kb on + strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.742 kb on - strand at 787.743 kb on + strand at 787.743 kb on + strand at 787.743 kb on + strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.744 kb on - strand at 787.849 kb on + strand at 787.850 kb on - strand at 787.911 kb on + strand at 787.911 kb on + strand at 787.911 kb on + strand at 787.912 kb on - strand at 787.912 kb on - strand at 788.146 kb on - strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.202 kb on + strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.203 kb on - strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.298 kb on + strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.299 kb on - strand, within MPMX19_04423 at 788.548 kb on + strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.560 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.628 kb on - strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.639 kb on + strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand at 788.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 785,067 + -1.2 785,067 + -2.6 785,068 - -1.1 785,068 - +0.0 785,314 - MPMX19_04421 0.33 -2.3 785,415 + MPMX19_04421 0.45 -0.4 785,415 + MPMX19_04421 0.45 -0.3 785,415 + MPMX19_04421 0.45 +0.6 785,415 + MPMX19_04421 0.45 -0.7 785,415 + MPMX19_04421 0.45 -0.5 785,415 + MPMX19_04421 0.45 -0.4 785,416 - MPMX19_04421 0.45 -0.5 785,416 - MPMX19_04421 0.45 -0.6 785,416 - MPMX19_04421 0.45 -0.8 785,416 - MPMX19_04421 0.45 +0.7 785,416 - MPMX19_04421 0.45 +0.5 785,416 - MPMX19_04421 0.45 -1.8 785,416 - MPMX19_04421 0.45 -1.2 785,416 - MPMX19_04421 0.45 -2.1 785,416 - MPMX19_04421 0.45 -0.9 785,417 + MPMX19_04421 0.45 -0.6 785,417 + MPMX19_04421 0.45 +0.9 785,418 - MPMX19_04421 0.45 +1.3 785,418 - MPMX19_04421 0.45 -1.0 785,418 - MPMX19_04421 0.45 -2.1 785,418 - MPMX19_04421 0.45 -0.1 785,499 + MPMX19_04421 0.54 -1.1 785,499 + MPMX19_04421 0.54 -1.1 785,499 + MPMX19_04421 0.54 -0.4 785,499 + MPMX19_04421 0.54 +1.0 785,499 + MPMX19_04421 0.54 -3.1 785,499 + MPMX19_04421 0.54 -1.5 785,499 + MPMX19_04421 0.54 -1.3 785,499 + MPMX19_04421 0.54 -0.4 785,499 + MPMX19_04421 0.54 -1.1 785,499 + MPMX19_04421 0.54 -0.3 785,499 + MPMX19_04421 0.54 +0.2 785,499 + MPMX19_04421 0.54 -0.8 785,500 - MPMX19_04421 0.55 -0.1 785,500 - MPMX19_04421 0.55 +0.0 785,500 - MPMX19_04421 0.55 +0.2 785,500 - MPMX19_04421 0.55 -0.5 785,500 - MPMX19_04421 0.55 +0.3 785,500 - MPMX19_04421 0.55 -1.7 785,500 - MPMX19_04421 0.55 +0.1 785,649 + MPMX19_04421 0.72 -1.3 785,649 + MPMX19_04421 0.72 +0.4 785,649 + MPMX19_04421 0.72 -0.0 785,650 - MPMX19_04421 0.72 -1.7 785,650 - MPMX19_04421 0.72 +0.0 785,650 - MPMX19_04421 0.72 -1.7 785,811 + -0.3 785,811 + -1.1 785,811 + +0.9 785,811 + -0.4 785,812 - -0.4 785,812 - -0.3 785,812 - -0.8 785,812 - -0.4 785,812 - +0.4 785,812 - -0.7 785,812 - -1.3 785,817 + -2.1 785,817 + -1.3 785,817 + +0.4 785,817 + +0.2 785,817 + +0.0 785,817 + -0.1 785,818 - -1.1 785,818 - -1.5 785,818 - -0.3 785,818 - -0.4 785,818 - -0.1 785,906 + +1.0 785,906 + -1.3 785,906 + +0.6 785,907 - +0.2 785,907 - -1.1 785,907 - -0.2 785,907 - -0.8 786,011 + +1.2 786,011 + -0.8 786,012 - +0.1 786,017 + -0.4 786,018 - +1.0 786,212 + MPMX19_04422 0.17 -2.7 786,212 + MPMX19_04422 0.17 -0.6 786,212 + MPMX19_04422 0.17 -1.0 786,213 - MPMX19_04422 0.17 -1.5 786,317 + MPMX19_04422 0.23 -0.6 786,317 + MPMX19_04422 0.23 +0.2 786,317 + MPMX19_04422 0.23 -0.6 786,317 + MPMX19_04422 0.23 -1.0 786,318 - MPMX19_04422 0.23 -0.8 786,318 - MPMX19_04422 0.23 -0.4 786,318 - MPMX19_04422 0.23 -0.8 786,318 - MPMX19_04422 0.23 +0.9 786,318 - MPMX19_04422 0.23 +1.2 786,318 - MPMX19_04422 0.23 -1.3 786,344 + MPMX19_04422 0.25 +0.9 786,344 + MPMX19_04422 0.25 +0.6 786,345 - MPMX19_04422 0.25 -1.4 786,434 + MPMX19_04422 0.30 +0.2 786,435 - MPMX19_04422 0.30 -0.4 786,435 - MPMX19_04422 0.30 +1.0 786,435 - MPMX19_04422 0.30 +0.2 786,435 - MPMX19_04422 0.30 -0.6 787,283 + MPMX19_04422 0.78 -0.2 787,283 + MPMX19_04422 0.78 -1.4 787,337 + MPMX19_04422 0.81 +1.2 787,337 + MPMX19_04422 0.81 -0.6 787,338 - MPMX19_04422 0.81 -1.0 787,338 - MPMX19_04422 0.81 -0.1 787,338 - MPMX19_04422 0.81 -0.8 787,338 - MPMX19_04422 0.81 -1.5 787,338 - MPMX19_04422 0.81 -0.1 787,338 - MPMX19_04422 0.81 +0.2 787,338 - MPMX19_04422 0.81 -0.1 787,346 - MPMX19_04422 0.82 -0.6 787,346 - MPMX19_04422 0.82 +0.0 787,346 - MPMX19_04422 0.82 +0.1 787,346 - MPMX19_04422 0.82 -0.8 787,346 - MPMX19_04422 0.82 -0.1 787,443 - MPMX19_04422 0.87 -3.3 787,639 - -0.8 787,730 + +1.8 787,730 + +0.1 787,730 + -2.1 787,730 + -0.8 787,730 + +1.0 787,730 + -0.8 787,731 - -1.8 787,731 - -1.4 787,731 - +0.2 787,731 - -0.9 787,731 - -0.9 787,731 - -1.9 787,741 + -1.2 787,741 + +3.2 787,741 + -1.1 787,741 + -1.5 787,741 + +0.9 787,741 + -1.4 787,742 - +0.6 787,742 - +1.2 787,742 - -1.1 787,742 - -0.0 787,742 - +0.2 787,742 - -0.4 787,742 - -1.1 787,742 - +0.4 787,742 - +0.6 787,742 - -0.6 787,743 + -0.3 787,743 + -0.8 787,743 + -0.4 787,744 - +0.1 787,744 - -1.7 787,744 - -1.0 787,744 - -0.8 787,744 - -0.2 787,849 + -0.7 787,850 - -1.5 787,911 + +1.0 787,911 + -0.6 787,911 + -2.0 787,912 - -1.4 787,912 - +0.9 788,146 - MPMX19_04423 0.50 +0.6 788,202 + MPMX19_04423 0.61 -1.3 788,202 + MPMX19_04423 0.61 +0.6 788,202 + MPMX19_04423 0.61 +0.1 788,202 + MPMX19_04423 0.61 +0.2 788,202 + MPMX19_04423 0.61 +0.4 788,202 + MPMX19_04423 0.61 -0.5 788,202 + MPMX19_04423 0.61 +0.0 788,202 + MPMX19_04423 0.61 -0.8 788,202 + MPMX19_04423 0.61 +0.9 788,203 - MPMX19_04423 0.61 -1.3 788,203 - MPMX19_04423 0.61 -0.2 788,203 - MPMX19_04423 0.61 +0.6 788,203 - MPMX19_04423 0.61 +0.1 788,203 - MPMX19_04423 0.61 +0.6 788,203 - MPMX19_04423 0.61 -0.3 788,203 - MPMX19_04423 0.61 -0.5 788,203 - MPMX19_04423 0.61 -1.8 788,203 - MPMX19_04423 0.61 -1.5 788,203 - MPMX19_04423 0.61 -0.4 788,203 - MPMX19_04423 0.61 -0.1 788,298 + MPMX19_04423 0.80 +1.2 788,298 + MPMX19_04423 0.80 -1.3 788,298 + MPMX19_04423 0.80 -0.1 788,298 + MPMX19_04423 0.80 -0.4 788,298 + MPMX19_04423 0.80 +0.3 788,298 + MPMX19_04423 0.80 +0.4 788,298 + MPMX19_04423 0.80 +0.7 788,298 + MPMX19_04423 0.80 -0.3 788,298 + MPMX19_04423 0.80 -1.3 788,298 + MPMX19_04423 0.80 -1.1 788,298 + MPMX19_04423 0.80 -0.1 788,298 + MPMX19_04423 0.80 -2.1 788,298 + MPMX19_04423 0.80 +0.8 788,299 - MPMX19_04423 0.80 +0.4 788,299 - MPMX19_04423 0.80 -1.0 788,299 - MPMX19_04423 0.80 -0.3 788,299 - MPMX19_04423 0.80 -0.1 788,299 - MPMX19_04423 0.80 -0.8 788,299 - MPMX19_04423 0.80 -0.1 788,548 + +0.4 788,560 - -1.5 788,560 - -1.9 788,560 - +0.2 788,560 - +1.0 788,628 - +0.6 788,628 - +0.2 788,628 - -0.1 788,628 - -1.5 788,628 - -1.6 788,628 - -0.6 788,628 - -0.1 788,639 + -2.3 788,639 + +0.2 788,639 + -1.5 788,639 + -0.5 788,639 + -0.4 788,640 - -0.4 788,640 - +1.2 788,640 - -0.9 788,640 - -1.4 788,640 - -0.9 788,640 - -1.8
Or see this region's nucleotide sequence