Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04409

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04407 and MPMX19_04408 overlap by 4 nucleotidesMPMX19_04408 and MPMX19_04409 are separated by 60 nucleotidesMPMX19_04409 and MPMX19_04410 are separated by 13 nucleotides MPMX19_04407: MPMX19_04407 - hypothetical protein, at 771,845 to 772,051 _04407 MPMX19_04408: MPMX19_04408 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 772,048 to 772,818 _04408 MPMX19_04409: MPMX19_04409 - hypothetical protein, at 772,879 to 773,769 _04409 MPMX19_04410: MPMX19_04410 - Oxalate:formate antiporter, at 773,783 to 775,078 _04410 Position (kb) 772 773 774Strain fitness (log2 ratio) -2 -1 0 1 2at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.941 kb on + strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.942 kb on - strand, within MPMX19_04407at 771.997 kb on + strand, within MPMX19_04407at 772.147 kb on + strand, within MPMX19_04408at 772.441 kb on + strand, within MPMX19_04408at 772.441 kb on + strand, within MPMX19_04408at 772.442 kb on - strand, within MPMX19_04408at 772.765 kb on + strandat 772.765 kb on + strandat 772.765 kb on + strandat 772.765 kb on + strandat 772.765 kb on + strandat 772.766 kb on - strandat 772.816 kb on + strandat 772.816 kb on + strandat 773.326 kb on + strand, within MPMX19_04409at 773.326 kb on + strand, within MPMX19_04409at 773.326 kb on + strand, within MPMX19_04409at 773.326 kb on + strand, within MPMX19_04409at 773.326 kb on + strand, within MPMX19_04409at 773.327 kb on - strand, within MPMX19_04409at 773.327 kb on - strand, within MPMX19_04409at 773.327 kb on - strand, within MPMX19_04409at 773.327 kb on - strand, within MPMX19_04409at 773.820 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.910 kb on + strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.911 kb on - strandat 773.991 kb on + strand, within MPMX19_04410at 773.991 kb on + strand, within MPMX19_04410at 773.991 kb on + strand, within MPMX19_04410at 773.991 kb on + strand, within MPMX19_04410at 773.991 kb on + strand, within MPMX19_04410at 773.991 kb on + strand, within MPMX19_04410at 773.991 kb on + strand, within MPMX19_04410at 773.991 kb on + strand, within MPMX19_04410at 773.991 kb on + strand, within MPMX19_04410at 773.992 kb on - strand, within MPMX19_04410at 773.992 kb on - strand, within MPMX19_04410at 773.992 kb on - strand, within MPMX19_04410at 773.992 kb on - strand, within MPMX19_04410at 773.992 kb on - strand, within MPMX19_04410at 773.992 kb on - strand, within MPMX19_04410at 773.992 kb on - strand, within MPMX19_04410at 773.992 kb on - strand, within MPMX19_04410at 773.992 kb on - strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.063 kb on + strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.064 kb on - strand, within MPMX19_04410at 774.396 kb on + strand, within MPMX19_04410at 774.396 kb on + strand, within MPMX19_04410at 774.396 kb on + strand, within MPMX19_04410at 774.396 kb on + strand, within MPMX19_04410at 774.396 kb on + strand, within MPMX19_04410at 774.396 kb on + strand, within MPMX19_04410at 774.396 kb on + strand, within MPMX19_04410at 774.397 kb on - strand, within MPMX19_04410at 774.397 kb on - strand, within MPMX19_04410at 774.397 kb on - strand, within MPMX19_04410at 774.397 kb on - strand, within MPMX19_04410at 774.397 kb on - strand, within MPMX19_04410at 774.397 kb on - strand, within MPMX19_04410at 774.397 kb on - strand, within MPMX19_04410at 774.397 kb on - strand, within MPMX19_04410at 774.397 kb on - strand, within MPMX19_04410at 774.573 kb on + strand, within MPMX19_04410at 774.573 kb on + strand, within MPMX19_04410at 774.573 kb on + strand, within MPMX19_04410at 774.573 kb on + strand, within MPMX19_04410at 774.573 kb on + strand, within MPMX19_04410at 774.574 kb on - strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.711 kb on + strand, within MPMX19_04410at 774.753 kb on + strand, within MPMX19_04410at 774.753 kb on + strand, within MPMX19_04410at 774.753 kb on + strand, within MPMX19_04410at 774.753 kb on + strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410at 774.754 kb on - strand, within MPMX19_04410

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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771,941 + MPMX19_04407 0.46 +0.4
771,941 + MPMX19_04407 0.46 -2.1
771,941 + MPMX19_04407 0.46 -1.3
771,941 + MPMX19_04407 0.46 -1.6
771,941 + MPMX19_04407 0.46 -0.4
771,941 + MPMX19_04407 0.46 -1.6
771,941 + MPMX19_04407 0.46 +1.0
771,941 + MPMX19_04407 0.46 +0.3
771,941 + MPMX19_04407 0.46 -1.2
771,941 + MPMX19_04407 0.46 +0.2
771,941 + MPMX19_04407 0.46 -0.5
771,941 + MPMX19_04407 0.46 -0.3
771,941 + MPMX19_04407 0.46 -0.9
771,941 + MPMX19_04407 0.46 +0.6
771,941 + MPMX19_04407 0.46 -0.1
771,941 + MPMX19_04407 0.46 -0.8
771,941 + MPMX19_04407 0.46 -0.7
771,941 + MPMX19_04407 0.46 +0.6
771,941 + MPMX19_04407 0.46 -0.2
771,941 + MPMX19_04407 0.46 -0.6
771,941 + MPMX19_04407 0.46 -0.5
771,941 + MPMX19_04407 0.46 -1.0
771,941 + MPMX19_04407 0.46 +1.2
771,941 + MPMX19_04407 0.46 +0.2
771,941 + MPMX19_04407 0.46 -0.6
771,941 + MPMX19_04407 0.46 -1.0
771,941 + MPMX19_04407 0.46 -1.4
771,942 - MPMX19_04407 0.47 -0.9
771,942 - MPMX19_04407 0.47 -0.4
771,942 - MPMX19_04407 0.47 -1.3
771,942 - MPMX19_04407 0.47 -1.0
771,942 - MPMX19_04407 0.47 -1.7
771,942 - MPMX19_04407 0.47 -0.5
771,942 - MPMX19_04407 0.47 -1.2
771,942 - MPMX19_04407 0.47 +0.2
771,942 - MPMX19_04407 0.47 -1.6
771,942 - MPMX19_04407 0.47 +0.1
771,942 - MPMX19_04407 0.47 -2.3
771,942 - MPMX19_04407 0.47 +0.6
771,942 - MPMX19_04407 0.47 -0.4
771,942 - MPMX19_04407 0.47 -0.0
771,942 - MPMX19_04407 0.47 -0.6
771,942 - MPMX19_04407 0.47 -0.4
771,942 - MPMX19_04407 0.47 -0.6
771,942 - MPMX19_04407 0.47 -0.1
771,942 - MPMX19_04407 0.47 -1.0
771,942 - MPMX19_04407 0.47 -1.1
771,942 - MPMX19_04407 0.47 -0.2
771,942 - MPMX19_04407 0.47 -0.4
771,942 - MPMX19_04407 0.47 -0.6
771,942 - MPMX19_04407 0.47 -0.3
771,942 - MPMX19_04407 0.47 -1.1
771,997 + MPMX19_04407 0.73 -1.3
772,147 + MPMX19_04408 0.13 +0.2
772,441 + MPMX19_04408 0.51 -0.3
772,441 + MPMX19_04408 0.51 +0.2
772,442 - MPMX19_04408 0.51 +0.2
772,765 + +1.7
772,765 + -1.9
772,765 + +1.0
772,765 + +0.2
772,765 + +1.0
772,766 - -0.1
772,816 + -0.8
772,816 + +0.2
773,326 + MPMX19_04409 0.50 -1.1
773,326 + MPMX19_04409 0.50 +0.3
773,326 + MPMX19_04409 0.50 -0.9
773,326 + MPMX19_04409 0.50 +0.6
773,326 + MPMX19_04409 0.50 +1.2
773,327 - MPMX19_04409 0.50 +0.8
773,327 - MPMX19_04409 0.50 +0.0
773,327 - MPMX19_04409 0.50 -2.1
773,327 - MPMX19_04409 0.50 -1.4
773,820 + -0.8
773,910 + -0.1
773,910 + -0.3
773,910 + -0.3
773,910 + -1.3
773,910 + -1.3
773,910 + +1.0
773,910 + +0.4
773,910 + -1.0
773,910 + -0.1
773,910 + -1.0
773,910 + -0.3
773,910 + -0.3
773,910 + +0.4
773,911 - +0.6
773,911 - -0.8
773,911 - -0.2
773,911 - -0.5
773,911 - -1.5
773,911 - -0.9
773,911 - -1.3
773,911 - -0.9
773,911 - +0.4
773,911 - -0.7
773,911 - -0.1
773,911 - -0.2
773,911 - -1.8
773,911 - -0.1
773,911 - -1.3
773,991 + MPMX19_04410 0.16 -1.0
773,991 + MPMX19_04410 0.16 +1.2
773,991 + MPMX19_04410 0.16 -0.3
773,991 + MPMX19_04410 0.16 -0.7
773,991 + MPMX19_04410 0.16 +1.2
773,991 + MPMX19_04410 0.16 -1.0
773,991 + MPMX19_04410 0.16 -1.0
773,991 + MPMX19_04410 0.16 -0.0
773,991 + MPMX19_04410 0.16 -1.3
773,992 - MPMX19_04410 0.16 -0.7
773,992 - MPMX19_04410 0.16 -1.6
773,992 - MPMX19_04410 0.16 -0.3
773,992 - MPMX19_04410 0.16 -0.6
773,992 - MPMX19_04410 0.16 -0.2
773,992 - MPMX19_04410 0.16 -1.3
773,992 - MPMX19_04410 0.16 +0.1
773,992 - MPMX19_04410 0.16 -1.1
773,992 - MPMX19_04410 0.16 -1.1
774,063 + MPMX19_04410 0.22 -1.4
774,063 + MPMX19_04410 0.22 -1.6
774,063 + MPMX19_04410 0.22 -1.1
774,063 + MPMX19_04410 0.22 -2.2
774,063 + MPMX19_04410 0.22 -1.0
774,063 + MPMX19_04410 0.22 +0.2
774,063 + MPMX19_04410 0.22 -0.6
774,063 + MPMX19_04410 0.22 +1.2
774,063 + MPMX19_04410 0.22 +0.6
774,063 + MPMX19_04410 0.22 -0.4
774,063 + MPMX19_04410 0.22 -0.6
774,063 + MPMX19_04410 0.22 -0.0
774,063 + MPMX19_04410 0.22 -1.0
774,064 - MPMX19_04410 0.22 -1.5
774,064 - MPMX19_04410 0.22 +0.2
774,064 - MPMX19_04410 0.22 -0.6
774,064 - MPMX19_04410 0.22 -0.5
774,064 - MPMX19_04410 0.22 -0.2
774,064 - MPMX19_04410 0.22 -0.8
774,064 - MPMX19_04410 0.22 -0.1
774,064 - MPMX19_04410 0.22 +0.2
774,064 - MPMX19_04410 0.22 -0.4
774,064 - MPMX19_04410 0.22 +0.0
774,064 - MPMX19_04410 0.22 -0.4
774,064 - MPMX19_04410 0.22 +0.3
774,064 - MPMX19_04410 0.22 +0.9
774,064 - MPMX19_04410 0.22 +0.4
774,396 + MPMX19_04410 0.47 -2.1
774,396 + MPMX19_04410 0.47 -1.0
774,396 + MPMX19_04410 0.47 +0.6
774,396 + MPMX19_04410 0.47 -1.0
774,396 + MPMX19_04410 0.47 +2.2
774,396 + MPMX19_04410 0.47 -1.6
774,396 + MPMX19_04410 0.47 +0.4
774,397 - MPMX19_04410 0.47 -1.0
774,397 - MPMX19_04410 0.47 -0.1
774,397 - MPMX19_04410 0.47 -1.1
774,397 - MPMX19_04410 0.47 +0.6
774,397 - MPMX19_04410 0.47 +0.6
774,397 - MPMX19_04410 0.47 -1.0
774,397 - MPMX19_04410 0.47 +0.2
774,397 - MPMX19_04410 0.47 -2.1
774,397 - MPMX19_04410 0.47 -1.8
774,573 + MPMX19_04410 0.61 -1.3
774,573 + MPMX19_04410 0.61 -1.1
774,573 + MPMX19_04410 0.61 -0.6
774,573 + MPMX19_04410 0.61 +0.2
774,573 + MPMX19_04410 0.61 -0.4
774,574 - MPMX19_04410 0.61 -1.1
774,711 + MPMX19_04410 0.72 -0.4
774,711 + MPMX19_04410 0.72 -2.1
774,711 + MPMX19_04410 0.72 +0.2
774,711 + MPMX19_04410 0.72 +0.3
774,711 + MPMX19_04410 0.72 -1.9
774,711 + MPMX19_04410 0.72 +0.9
774,711 + MPMX19_04410 0.72 -0.1
774,711 + MPMX19_04410 0.72 +0.7
774,753 + MPMX19_04410 0.75 +0.4
774,753 + MPMX19_04410 0.75 +0.8
774,753 + MPMX19_04410 0.75 -0.6
774,753 + MPMX19_04410 0.75 +0.4
774,754 - MPMX19_04410 0.75 -2.2
774,754 - MPMX19_04410 0.75 -0.9
774,754 - MPMX19_04410 0.75 -2.3
774,754 - MPMX19_04410 0.75 -1.0
774,754 - MPMX19_04410 0.75 -1.1
774,754 - MPMX19_04410 0.75 -0.3
774,754 - MPMX19_04410 0.75 +0.0
774,754 - MPMX19_04410 0.75 -0.8
774,754 - MPMX19_04410 0.75 -1.0

Or see this region's nucleotide sequence