Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04344 and MPMX19_04345 are separated by 154 nucleotides MPMX19_04345 and MPMX19_04346 are separated by 96 nucleotides
MPMX19_04344: MPMX19_04344 - Multidrug resistance protein MdtA, at 708,687 to 709,841
_04344
MPMX19_04345: MPMX19_04345 - hypothetical protein, at 709,996 to 710,298
_04345
MPMX19_04346: MPMX19_04346 - hypothetical protein, at 710,395 to 711,258
_04346
Position (kb) 709
710
711 Strain fitness (log2 ratio) -2
-1
0
1
2 at 709.051 kb on + strand, within MPMX19_04344 at 709.051 kb on + strand, within MPMX19_04344 at 709.051 kb on + strand, within MPMX19_04344 at 709.051 kb on + strand, within MPMX19_04344 at 709.051 kb on + strand, within MPMX19_04344 at 709.051 kb on + strand, within MPMX19_04344 at 709.051 kb on + strand, within MPMX19_04344 at 709.051 kb on + strand, within MPMX19_04344 at 709.051 kb on + strand, within MPMX19_04344 at 709.051 kb on + strand, within MPMX19_04344 at 709.051 kb on + strand, within MPMX19_04344 at 709.052 kb on - strand, within MPMX19_04344 at 709.052 kb on - strand, within MPMX19_04344 at 709.052 kb on - strand, within MPMX19_04344 at 709.052 kb on - strand, within MPMX19_04344 at 709.052 kb on - strand, within MPMX19_04344 at 709.052 kb on - strand, within MPMX19_04344 at 709.052 kb on - strand, within MPMX19_04344 at 709.052 kb on - strand, within MPMX19_04344 at 709.052 kb on - strand, within MPMX19_04344 at 709.052 kb on - strand, within MPMX19_04344 at 709.774 kb on + strand at 709.774 kb on + strand at 709.774 kb on + strand at 709.774 kb on + strand at 709.774 kb on + strand at 709.774 kb on + strand at 709.774 kb on + strand at 709.774 kb on + strand at 709.774 kb on + strand at 709.774 kb on + strand at 709.775 kb on - strand at 709.775 kb on - strand at 709.775 kb on - strand at 709.775 kb on - strand at 709.775 kb on - strand at 709.775 kb on - strand at 709.780 kb on + strand at 709.780 kb on + strand at 709.780 kb on + strand at 709.781 kb on - strand at 709.781 kb on - strand at 709.781 kb on - strand at 709.781 kb on - strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.910 kb on + strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.911 kb on - strand at 709.913 kb on - strand at 709.913 kb on - strand at 709.913 kb on - strand at 709.965 kb on + strand at 709.965 kb on + strand at 709.965 kb on + strand at 709.966 kb on - strand at 709.981 kb on - strand at 709.990 kb on + strand at 709.991 kb on - strand at 709.997 kb on + strand at 709.997 kb on + strand at 709.998 kb on - strand at 709.998 kb on - strand at 709.998 kb on - strand at 710.097 kb on + strand, within MPMX19_04345 at 710.097 kb on + strand, within MPMX19_04345 at 710.097 kb on + strand, within MPMX19_04345 at 710.097 kb on + strand, within MPMX19_04345 at 710.097 kb on + strand, within MPMX19_04345 at 710.097 kb on + strand, within MPMX19_04345 at 710.097 kb on + strand, within MPMX19_04345 at 710.097 kb on + strand, within MPMX19_04345 at 710.098 kb on - strand, within MPMX19_04345 at 710.098 kb on - strand, within MPMX19_04345 at 710.098 kb on - strand, within MPMX19_04345 at 710.098 kb on - strand, within MPMX19_04345 at 710.098 kb on - strand, within MPMX19_04345 at 710.098 kb on - strand, within MPMX19_04345 at 710.098 kb on - strand, within MPMX19_04345 at 710.109 kb on + strand, within MPMX19_04345 at 710.109 kb on + strand, within MPMX19_04345 at 710.109 kb on + strand, within MPMX19_04345 at 710.109 kb on + strand, within MPMX19_04345 at 710.110 kb on - strand, within MPMX19_04345 at 710.110 kb on - strand, within MPMX19_04345 at 710.110 kb on - strand, within MPMX19_04345 at 710.306 kb on + strand at 710.306 kb on + strand at 710.306 kb on + strand at 710.307 kb on - strand at 710.358 kb on + strand at 710.358 kb on + strand at 710.358 kb on + strand at 710.358 kb on + strand at 710.359 kb on - strand at 710.359 kb on - strand at 710.359 kb on - strand at 710.359 kb on - strand at 710.396 kb on + strand at 710.396 kb on + strand at 710.396 kb on + strand at 710.397 kb on - strand at 710.397 kb on - strand at 710.397 kb on - strand at 710.462 kb on + strand at 710.462 kb on + strand at 710.462 kb on + strand at 710.462 kb on + strand at 710.462 kb on + strand at 710.462 kb on + strand at 710.462 kb on + strand at 710.463 kb on - strand at 710.463 kb on - strand at 710.463 kb on - strand at 710.463 kb on - strand at 710.463 kb on - strand at 710.463 kb on - strand at 710.463 kb on - strand at 710.463 kb on - strand at 710.463 kb on - strand at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.642 kb on + strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.643 kb on - strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.834 kb on + strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 710.835 kb on - strand, within MPMX19_04346 at 711.098 kb on + strand, within MPMX19_04346 at 711.099 kb on - strand, within MPMX19_04346 at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.258 kb on + strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand at 711.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 709,051 + MPMX19_04344 0.32 -1.1 709,051 + MPMX19_04344 0.32 -0.4 709,051 + MPMX19_04344 0.32 +0.6 709,051 + MPMX19_04344 0.32 -0.5 709,051 + MPMX19_04344 0.32 +0.1 709,051 + MPMX19_04344 0.32 -1.0 709,051 + MPMX19_04344 0.32 +0.4 709,051 + MPMX19_04344 0.32 -1.2 709,051 + MPMX19_04344 0.32 -0.7 709,051 + MPMX19_04344 0.32 -1.3 709,051 + MPMX19_04344 0.32 -2.3 709,052 - MPMX19_04344 0.32 -1.3 709,052 - MPMX19_04344 0.32 -1.0 709,052 - MPMX19_04344 0.32 -0.5 709,052 - MPMX19_04344 0.32 +0.4 709,052 - MPMX19_04344 0.32 -0.0 709,052 - MPMX19_04344 0.32 -2.3 709,052 - MPMX19_04344 0.32 -0.7 709,052 - MPMX19_04344 0.32 -1.3 709,052 - MPMX19_04344 0.32 +1.8 709,052 - MPMX19_04344 0.32 -0.0 709,774 + +0.6 709,774 + -0.8 709,774 + +0.2 709,774 + -0.1 709,774 + -0.9 709,774 + +1.2 709,774 + -0.2 709,774 + -1.3 709,774 + +0.2 709,774 + -0.6 709,775 - -0.9 709,775 - -1.5 709,775 - +0.1 709,775 - -0.1 709,775 - -0.3 709,775 - +0.2 709,780 + -1.3 709,780 + -0.5 709,780 + -0.2 709,781 - -1.0 709,781 - +0.2 709,781 - -1.1 709,781 - -0.6 709,910 + -0.3 709,910 + -1.4 709,910 + -1.0 709,910 + -0.8 709,910 + -0.4 709,910 + +0.6 709,910 + -0.9 709,910 + +0.5 709,910 + -0.5 709,910 + -0.4 709,910 + +1.1 709,910 + -0.4 709,910 + -0.6 709,911 - -0.8 709,911 - +0.1 709,911 - -1.2 709,911 - +1.0 709,911 - -0.2 709,911 - -1.1 709,911 - -0.5 709,911 - +0.2 709,911 - -2.2 709,911 - -1.5 709,911 - -1.1 709,911 - -1.4 709,911 - +0.2 709,913 - +0.1 709,913 - -0.6 709,913 - -0.8 709,965 + -2.2 709,965 + -1.0 709,965 + -1.3 709,966 - -1.0 709,981 - +0.0 709,990 + +0.2 709,991 - +0.0 709,997 + -0.3 709,997 + -2.2 709,998 - -0.1 709,998 - +1.0 709,998 - -1.9 710,097 + MPMX19_04345 0.33 +0.2 710,097 + MPMX19_04345 0.33 -0.7 710,097 + MPMX19_04345 0.33 +1.0 710,097 + MPMX19_04345 0.33 -0.8 710,097 + MPMX19_04345 0.33 +0.4 710,097 + MPMX19_04345 0.33 +1.4 710,097 + MPMX19_04345 0.33 -0.7 710,097 + MPMX19_04345 0.33 +0.2 710,098 - MPMX19_04345 0.34 -0.4 710,098 - MPMX19_04345 0.34 -0.1 710,098 - MPMX19_04345 0.34 +0.4 710,098 - MPMX19_04345 0.34 -0.1 710,098 - MPMX19_04345 0.34 -0.8 710,098 - MPMX19_04345 0.34 -0.1 710,098 - MPMX19_04345 0.34 -0.8 710,109 + MPMX19_04345 0.37 -1.3 710,109 + MPMX19_04345 0.37 -1.3 710,109 + MPMX19_04345 0.37 -0.2 710,109 + MPMX19_04345 0.37 -0.1 710,110 - MPMX19_04345 0.38 -2.2 710,110 - MPMX19_04345 0.38 -0.5 710,110 - MPMX19_04345 0.38 -1.7 710,306 + +0.1 710,306 + -0.3 710,306 + -0.0 710,307 - +1.0 710,358 + -0.8 710,358 + +0.6 710,358 + -0.1 710,358 + +0.0 710,359 - -0.7 710,359 - -1.7 710,359 - -0.3 710,359 - -0.6 710,396 + -0.4 710,396 + -1.0 710,396 + -1.1 710,397 - +0.3 710,397 - -0.6 710,397 - -2.0 710,462 + -0.6 710,462 + +1.2 710,462 + +0.6 710,462 + -0.1 710,462 + +0.9 710,462 + -0.4 710,462 + -1.1 710,463 - -1.0 710,463 - -0.6 710,463 - +0.1 710,463 - -1.2 710,463 - -0.4 710,463 - +0.9 710,463 - -1.1 710,463 - -0.4 710,463 - -0.3 710,642 + MPMX19_04346 0.29 -0.3 710,642 + MPMX19_04346 0.29 -1.7 710,642 + MPMX19_04346 0.29 -0.4 710,642 + MPMX19_04346 0.29 -0.8 710,642 + MPMX19_04346 0.29 +0.3 710,642 + MPMX19_04346 0.29 -0.1 710,642 + MPMX19_04346 0.29 -1.5 710,642 + MPMX19_04346 0.29 +0.1 710,642 + MPMX19_04346 0.29 -1.7 710,642 + MPMX19_04346 0.29 +0.4 710,642 + MPMX19_04346 0.29 -1.8 710,642 + MPMX19_04346 0.29 -2.1 710,642 + MPMX19_04346 0.29 -1.0 710,642 + MPMX19_04346 0.29 +0.9 710,642 + MPMX19_04346 0.29 +1.2 710,642 + MPMX19_04346 0.29 +1.2 710,642 + MPMX19_04346 0.29 -0.4 710,642 + MPMX19_04346 0.29 -0.5 710,642 + MPMX19_04346 0.29 +0.0 710,642 + MPMX19_04346 0.29 -2.0 710,642 + MPMX19_04346 0.29 -0.5 710,642 + MPMX19_04346 0.29 -1.8 710,642 + MPMX19_04346 0.29 -1.3 710,642 + MPMX19_04346 0.29 -0.4 710,642 + MPMX19_04346 0.29 -0.6 710,642 + MPMX19_04346 0.29 +0.2 710,642 + MPMX19_04346 0.29 -0.9 710,642 + MPMX19_04346 0.29 -1.5 710,642 + MPMX19_04346 0.29 +1.4 710,642 + MPMX19_04346 0.29 +0.3 710,642 + MPMX19_04346 0.29 +0.2 710,642 + MPMX19_04346 0.29 -1.0 710,642 + MPMX19_04346 0.29 -2.6 710,642 + MPMX19_04346 0.29 -0.6 710,642 + MPMX19_04346 0.29 +0.9 710,642 + MPMX19_04346 0.29 +0.4 710,643 - MPMX19_04346 0.29 -1.1 710,643 - MPMX19_04346 0.29 +1.2 710,643 - MPMX19_04346 0.29 -1.5 710,643 - MPMX19_04346 0.29 +0.2 710,643 - MPMX19_04346 0.29 +0.4 710,643 - MPMX19_04346 0.29 -0.6 710,643 - MPMX19_04346 0.29 +0.4 710,643 - MPMX19_04346 0.29 -0.2 710,643 - MPMX19_04346 0.29 -1.0 710,643 - MPMX19_04346 0.29 -0.5 710,643 - MPMX19_04346 0.29 +0.0 710,643 - MPMX19_04346 0.29 -0.5 710,643 - MPMX19_04346 0.29 -0.2 710,643 - MPMX19_04346 0.29 -0.3 710,643 - MPMX19_04346 0.29 -0.2 710,643 - MPMX19_04346 0.29 -0.1 710,643 - MPMX19_04346 0.29 +1.0 710,643 - MPMX19_04346 0.29 -1.0 710,643 - MPMX19_04346 0.29 -0.6 710,643 - MPMX19_04346 0.29 -0.4 710,643 - MPMX19_04346 0.29 -0.4 710,643 - MPMX19_04346 0.29 -0.4 710,643 - MPMX19_04346 0.29 +1.0 710,643 - MPMX19_04346 0.29 -1.0 710,643 - MPMX19_04346 0.29 -1.1 710,643 - MPMX19_04346 0.29 -0.0 710,643 - MPMX19_04346 0.29 -1.3 710,643 - MPMX19_04346 0.29 -0.1 710,643 - MPMX19_04346 0.29 -1.1 710,643 - MPMX19_04346 0.29 -0.6 710,834 + MPMX19_04346 0.51 -0.7 710,834 + MPMX19_04346 0.51 -1.9 710,834 + MPMX19_04346 0.51 -2.1 710,834 + MPMX19_04346 0.51 -0.1 710,834 + MPMX19_04346 0.51 -0.2 710,834 + MPMX19_04346 0.51 -1.0 710,834 + MPMX19_04346 0.51 -1.0 710,834 + MPMX19_04346 0.51 -0.1 710,834 + MPMX19_04346 0.51 +0.9 710,834 + MPMX19_04346 0.51 -0.9 710,834 + MPMX19_04346 0.51 -0.8 710,834 + MPMX19_04346 0.51 -2.1 710,834 + MPMX19_04346 0.51 -0.6 710,834 + MPMX19_04346 0.51 -0.0 710,834 + MPMX19_04346 0.51 +0.9 710,834 + MPMX19_04346 0.51 -0.6 710,834 + MPMX19_04346 0.51 -0.5 710,834 + MPMX19_04346 0.51 +0.8 710,834 + MPMX19_04346 0.51 -1.1 710,835 - MPMX19_04346 0.51 -0.8 710,835 - MPMX19_04346 0.51 -1.5 710,835 - MPMX19_04346 0.51 -0.5 710,835 - MPMX19_04346 0.51 -1.4 710,835 - MPMX19_04346 0.51 +1.8 710,835 - MPMX19_04346 0.51 +0.1 710,835 - MPMX19_04346 0.51 +0.6 710,835 - MPMX19_04346 0.51 -1.1 710,835 - MPMX19_04346 0.51 +0.3 710,835 - MPMX19_04346 0.51 -0.3 710,835 - MPMX19_04346 0.51 +0.7 710,835 - MPMX19_04346 0.51 -1.3 710,835 - MPMX19_04346 0.51 +0.7 710,835 - MPMX19_04346 0.51 -0.5 710,835 - MPMX19_04346 0.51 -1.2 710,835 - MPMX19_04346 0.51 -0.1 710,835 - MPMX19_04346 0.51 +0.7 710,835 - MPMX19_04346 0.51 -0.6 711,098 + MPMX19_04346 0.81 +0.3 711,099 - MPMX19_04346 0.81 +1.2 711,258 + -0.4 711,258 + -0.2 711,258 + +2.2 711,258 + -1.6 711,258 + -0.8 711,258 + -0.1 711,258 + -1.1 711,258 + -0.4 711,258 + -0.5 711,259 - +0.4 711,259 - -0.7 711,259 - -1.0 711,259 - -0.9 711,259 - -1.6 711,259 - -0.2 711,259 - +1.2 711,259 - -0.8
Or see this region's nucleotide sequence