Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04329

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04328 and MPMX19_04329 are separated by 58 nucleotidesMPMX19_04329 and MPMX19_04330 are separated by 192 nucleotidesMPMX19_04330 and MPMX19_04331 are separated by 36 nucleotides MPMX19_04328: MPMX19_04328 - Arginine--tRNA ligase, at 691,920 to 693,680 _04328 MPMX19_04329: MPMX19_04329 - Deoxyguanosinetriphosphate triphosphohydrolase-like protein, at 693,739 to 694,938 _04329 MPMX19_04330: MPMX19_04330 - Iron-sulfur cluster insertion protein ErpA, at 695,131 to 695,487 _04330 MPMX19_04331: MPMX19_04331 - Exodeoxyribonuclease, at 695,524 to 696,297 _04331 Position (kb) 693 694 695Strain fitness (log2 ratio) -2 -1 0 1 2at 693.813 kb on - strandat 693.813 kb on - strandat 693.813 kb on - strandat 693.813 kb on - strandat 693.813 kb on - strandat 693.871 kb on - strand, within MPMX19_04329at 693.975 kb on - strand, within MPMX19_04329at 693.984 kb on - strand, within MPMX19_04329at 693.984 kb on - strand, within MPMX19_04329at 693.984 kb on - strand, within MPMX19_04329at 693.984 kb on - strand, within MPMX19_04329at 693.984 kb on - strand, within MPMX19_04329at 693.984 kb on - strand, within MPMX19_04329at 693.984 kb on - strand, within MPMX19_04329at 693.984 kb on - strand, within MPMX19_04329at 693.984 kb on - strand, within MPMX19_04329at 693.984 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.311 kb on - strand, within MPMX19_04329at 694.509 kb on - strand, within MPMX19_04329at 694.509 kb on - strand, within MPMX19_04329at 694.509 kb on - strand, within MPMX19_04329at 694.509 kb on - strand, within MPMX19_04329at 694.509 kb on - strand, within MPMX19_04329at 694.509 kb on - strand, within MPMX19_04329at 694.509 kb on - strand, within MPMX19_04329at 694.509 kb on - strand, within MPMX19_04329at 694.740 kb on - strand, within MPMX19_04329at 694.743 kb on - strand, within MPMX19_04329at 694.743 kb on - strand, within MPMX19_04329at 694.743 kb on - strand, within MPMX19_04329at 694.758 kb on - strand, within MPMX19_04329at 694.758 kb on - strand, within MPMX19_04329at 694.758 kb on - strand, within MPMX19_04329at 694.951 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 694.990 kb on - strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.060 kb on + strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.061 kb on - strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.087 kb on + strandat 695.088 kb on - strandat 695.088 kb on - strandat 695.677 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.707 kb on + strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.708 kb on - strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.794 kb on + strand, within MPMX19_04331at 695.795 kb on - strand, within MPMX19_04331at 695.795 kb on - strand, within MPMX19_04331at 695.795 kb on - strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.836 kb on + strand, within MPMX19_04331at 695.837 kb on - strand, within MPMX19_04331at 695.837 kb on - strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.878 kb on + strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.879 kb on - strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.905 kb on + strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331at 695.906 kb on - strand, within MPMX19_04331

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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693,813 - -1.8
693,813 - +1.0
693,813 - -0.7
693,813 - -2.2
693,813 - -1.1
693,871 - MPMX19_04329 0.11 -2.5
693,975 - MPMX19_04329 0.20 -2.1
693,984 - MPMX19_04329 0.20 -1.0
693,984 - MPMX19_04329 0.20 +0.5
693,984 - MPMX19_04329 0.20 -1.7
693,984 - MPMX19_04329 0.20 -0.8
693,984 - MPMX19_04329 0.20 -0.6
693,984 - MPMX19_04329 0.20 +1.8
693,984 - MPMX19_04329 0.20 -0.1
693,984 - MPMX19_04329 0.20 +0.0
693,984 - MPMX19_04329 0.20 -0.7
693,984 - MPMX19_04329 0.20 +0.7
694,311 - MPMX19_04329 0.48 -0.4
694,311 - MPMX19_04329 0.48 -2.0
694,311 - MPMX19_04329 0.48 +0.2
694,311 - MPMX19_04329 0.48 -0.6
694,311 - MPMX19_04329 0.48 -0.1
694,311 - MPMX19_04329 0.48 -1.4
694,311 - MPMX19_04329 0.48 +0.3
694,311 - MPMX19_04329 0.48 -0.3
694,311 - MPMX19_04329 0.48 -0.1
694,311 - MPMX19_04329 0.48 +0.3
694,311 - MPMX19_04329 0.48 -0.3
694,311 - MPMX19_04329 0.48 +0.6
694,509 - MPMX19_04329 0.64 +0.4
694,509 - MPMX19_04329 0.64 -0.5
694,509 - MPMX19_04329 0.64 -0.8
694,509 - MPMX19_04329 0.64 +0.2
694,509 - MPMX19_04329 0.64 -0.4
694,509 - MPMX19_04329 0.64 -1.3
694,509 - MPMX19_04329 0.64 -0.8
694,509 - MPMX19_04329 0.64 -1.1
694,740 - MPMX19_04329 0.83 -1.4
694,743 - MPMX19_04329 0.84 +1.0
694,743 - MPMX19_04329 0.84 -1.1
694,743 - MPMX19_04329 0.84 -1.1
694,758 - MPMX19_04329 0.85 -1.0
694,758 - MPMX19_04329 0.85 +1.0
694,758 - MPMX19_04329 0.85 +1.7
694,951 - -0.2
694,990 - -1.6
694,990 - -0.3
694,990 - -0.4
694,990 - +0.0
694,990 - -0.4
694,990 - +0.6
694,990 - -0.4
694,990 - -0.8
694,990 - -0.2
694,990 - -0.8
695,060 + -1.6
695,060 + -1.0
695,060 + -1.6
695,060 + +1.3
695,060 + -0.8
695,060 + -1.8
695,060 + -1.3
695,060 + -1.7
695,060 + -1.3
695,061 - -0.3
695,061 - +0.6
695,061 - -1.7
695,061 - -0.9
695,061 - +0.9
695,061 - -1.1
695,061 - +0.2
695,087 + -1.8
695,087 + +1.2
695,087 + -1.4
695,087 + -0.7
695,087 + -0.7
695,087 + -0.2
695,087 + -1.3
695,087 + -1.4
695,087 + +0.2
695,088 - -0.4
695,088 - +0.6
695,677 + MPMX19_04331 0.20 -0.6
695,707 + MPMX19_04331 0.24 -1.1
695,707 + MPMX19_04331 0.24 +0.6
695,707 + MPMX19_04331 0.24 -1.4
695,707 + MPMX19_04331 0.24 +0.6
695,707 + MPMX19_04331 0.24 -1.2
695,707 + MPMX19_04331 0.24 -0.0
695,707 + MPMX19_04331 0.24 -1.0
695,707 + MPMX19_04331 0.24 +1.8
695,707 + MPMX19_04331 0.24 -0.5
695,707 + MPMX19_04331 0.24 +0.1
695,707 + MPMX19_04331 0.24 +0.4
695,707 + MPMX19_04331 0.24 -0.7
695,708 - MPMX19_04331 0.24 -1.0
695,708 - MPMX19_04331 0.24 -0.1
695,708 - MPMX19_04331 0.24 +0.3
695,708 - MPMX19_04331 0.24 -1.4
695,708 - MPMX19_04331 0.24 -0.8
695,708 - MPMX19_04331 0.24 -1.0
695,708 - MPMX19_04331 0.24 -0.2
695,708 - MPMX19_04331 0.24 -1.8
695,708 - MPMX19_04331 0.24 +0.4
695,794 + MPMX19_04331 0.35 -0.4
695,794 + MPMX19_04331 0.35 -0.6
695,794 + MPMX19_04331 0.35 +0.3
695,794 + MPMX19_04331 0.35 -1.1
695,794 + MPMX19_04331 0.35 -1.1
695,795 - MPMX19_04331 0.35 +1.6
695,795 - MPMX19_04331 0.35 -0.7
695,795 - MPMX19_04331 0.35 -0.2
695,836 + MPMX19_04331 0.40 -2.0
695,836 + MPMX19_04331 0.40 +1.4
695,836 + MPMX19_04331 0.40 +1.2
695,836 + MPMX19_04331 0.40 -0.1
695,836 + MPMX19_04331 0.40 -0.4
695,836 + MPMX19_04331 0.40 -1.0
695,836 + MPMX19_04331 0.40 +1.1
695,837 - MPMX19_04331 0.40 -0.6
695,837 - MPMX19_04331 0.40 +1.4
695,878 + MPMX19_04331 0.46 +0.0
695,878 + MPMX19_04331 0.46 +0.9
695,878 + MPMX19_04331 0.46 -0.1
695,878 + MPMX19_04331 0.46 +0.6
695,878 + MPMX19_04331 0.46 +0.2
695,879 - MPMX19_04331 0.46 +0.9
695,879 - MPMX19_04331 0.46 -1.2
695,879 - MPMX19_04331 0.46 -0.5
695,879 - MPMX19_04331 0.46 -1.3
695,905 + MPMX19_04331 0.49 +0.0
695,905 + MPMX19_04331 0.49 -0.3
695,905 + MPMX19_04331 0.49 -0.5
695,905 + MPMX19_04331 0.49 -0.8
695,905 + MPMX19_04331 0.49 -1.0
695,905 + MPMX19_04331 0.49 -0.4
695,905 + MPMX19_04331 0.49 -1.5
695,905 + MPMX19_04331 0.49 +0.6
695,906 - MPMX19_04331 0.49 -0.4
695,906 - MPMX19_04331 0.49 +0.3
695,906 - MPMX19_04331 0.49 -0.6
695,906 - MPMX19_04331 0.49 -1.6
695,906 - MPMX19_04331 0.49 +1.8

Or see this region's nucleotide sequence