Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04325

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04323 and MPMX19_04324 overlap by 8 nucleotidesMPMX19_04324 and MPMX19_04325 are separated by 11 nucleotidesMPMX19_04325 and MPMX19_04326 are separated by 16 nucleotides MPMX19_04323: MPMX19_04323 - Segregation and condensation protein B, at 687,632 to 688,249 _04323 MPMX19_04324: MPMX19_04324 - Segregation and condensation protein A, at 688,242 to 689,072 _04324 MPMX19_04325: MPMX19_04325 - hypothetical protein, at 689,084 to 689,761 _04325 MPMX19_04326: MPMX19_04326 - Beta-hexosaminidase, at 689,778 to 690,818 _04326 Position (kb) 689 690Strain fitness (log2 ratio) -2 -1 0 1 2at 688.243 kb on + strandat 688.243 kb on + strandat 688.243 kb on + strandat 688.243 kb on + strandat 688.243 kb on + strandat 688.243 kb on + strandat 688.244 kb on - strandat 688.244 kb on - strandat 688.244 kb on - strandat 688.244 kb on - strandat 688.309 kb on + strandat 688.309 kb on + strandat 688.309 kb on + strandat 688.309 kb on + strandat 688.309 kb on + strandat 688.309 kb on + strandat 688.309 kb on + strandat 688.309 kb on + strandat 688.309 kb on + strandat 688.310 kb on - strandat 688.310 kb on - strandat 688.310 kb on - strandat 688.310 kb on - strandat 688.310 kb on - strandat 688.310 kb on - strandat 688.310 kb on - strandat 688.310 kb on - strandat 688.310 kb on - strandat 688.513 kb on + strand, within MPMX19_04324at 688.513 kb on + strand, within MPMX19_04324at 688.513 kb on + strand, within MPMX19_04324at 688.574 kb on - strand, within MPMX19_04324at 688.574 kb on - strand, within MPMX19_04324at 688.574 kb on - strand, within MPMX19_04324at 688.606 kb on + strand, within MPMX19_04324at 688.606 kb on + strand, within MPMX19_04324at 688.606 kb on + strand, within MPMX19_04324at 688.606 kb on + strand, within MPMX19_04324at 688.607 kb on - strand, within MPMX19_04324at 688.607 kb on - strand, within MPMX19_04324at 688.607 kb on - strand, within MPMX19_04324at 688.810 kb on + strand, within MPMX19_04324at 688.810 kb on + strand, within MPMX19_04324at 688.811 kb on - strand, within MPMX19_04324at 688.837 kb on + strand, within MPMX19_04324at 688.837 kb on + strand, within MPMX19_04324at 688.837 kb on + strand, within MPMX19_04324at 688.837 kb on + strand, within MPMX19_04324at 688.838 kb on - strand, within MPMX19_04324at 688.838 kb on - strand, within MPMX19_04324at 688.838 kb on - strand, within MPMX19_04324at 688.838 kb on - strand, within MPMX19_04324at 688.838 kb on - strand, within MPMX19_04324at 688.891 kb on + strand, within MPMX19_04324at 688.891 kb on + strand, within MPMX19_04324at 688.891 kb on + strand, within MPMX19_04324at 688.892 kb on - strand, within MPMX19_04324at 689.082 kb on + strandat 689.082 kb on + strandat 689.082 kb on + strandat 689.082 kb on + strandat 689.082 kb on + strandat 689.082 kb on + strandat 689.082 kb on + strandat 689.083 kb on - strandat 689.083 kb on - strandat 689.392 kb on + strand, within MPMX19_04325at 689.393 kb on - strand, within MPMX19_04325at 689.393 kb on - strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.394 kb on + strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.395 kb on - strand, within MPMX19_04325at 689.568 kb on + strand, within MPMX19_04325at 689.568 kb on + strand, within MPMX19_04325at 689.568 kb on + strand, within MPMX19_04325at 689.568 kb on + strand, within MPMX19_04325at 689.568 kb on + strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 689.569 kb on - strand, within MPMX19_04325at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326at 690.465 kb on - strand, within MPMX19_04326

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
688,243 + -1.0
688,243 + +0.8
688,243 + -0.9
688,243 + +1.6
688,243 + +0.2
688,243 + -1.4
688,244 - +2.2
688,244 - +0.5
688,244 - -2.1
688,244 - -0.6
688,309 + +0.1
688,309 + -0.8
688,309 + -1.0
688,309 + +0.1
688,309 + -1.8
688,309 + -0.1
688,309 + +1.4
688,309 + +0.5
688,309 + -0.7
688,310 - -0.1
688,310 - -1.1
688,310 - +0.7
688,310 - -0.1
688,310 - -1.1
688,310 - -1.0
688,310 - -0.5
688,310 - +1.9
688,310 - -0.8
688,513 + MPMX19_04324 0.33 -0.1
688,513 + MPMX19_04324 0.33 +0.2
688,513 + MPMX19_04324 0.33 -0.3
688,574 - MPMX19_04324 0.40 +0.2
688,574 - MPMX19_04324 0.40 -1.1
688,574 - MPMX19_04324 0.40 -0.8
688,606 + MPMX19_04324 0.44 +0.3
688,606 + MPMX19_04324 0.44 +0.2
688,606 + MPMX19_04324 0.44 +0.6
688,606 + MPMX19_04324 0.44 +0.1
688,607 - MPMX19_04324 0.44 -0.4
688,607 - MPMX19_04324 0.44 -0.2
688,607 - MPMX19_04324 0.44 +1.6
688,810 + MPMX19_04324 0.68 +1.4
688,810 + MPMX19_04324 0.68 +0.6
688,811 - MPMX19_04324 0.68 -0.6
688,837 + MPMX19_04324 0.72 +0.0
688,837 + MPMX19_04324 0.72 -1.0
688,837 + MPMX19_04324 0.72 +1.2
688,837 + MPMX19_04324 0.72 -1.7
688,838 - MPMX19_04324 0.72 -1.1
688,838 - MPMX19_04324 0.72 -1.0
688,838 - MPMX19_04324 0.72 -1.8
688,838 - MPMX19_04324 0.72 -0.1
688,838 - MPMX19_04324 0.72 -0.4
688,891 + MPMX19_04324 0.78 +0.3
688,891 + MPMX19_04324 0.78 +0.4
688,891 + MPMX19_04324 0.78 -0.6
688,892 - MPMX19_04324 0.78 +0.4
689,082 + -1.8
689,082 + -0.5
689,082 + -1.0
689,082 + -0.6
689,082 + -1.9
689,082 + +0.2
689,082 + -1.5
689,083 - -0.8
689,083 - -1.7
689,392 + MPMX19_04325 0.45 -1.4
689,393 - MPMX19_04325 0.46 -0.4
689,393 - MPMX19_04325 0.46 -0.4
689,394 + MPMX19_04325 0.46 -1.1
689,394 + MPMX19_04325 0.46 -1.0
689,394 + MPMX19_04325 0.46 +0.6
689,394 + MPMX19_04325 0.46 -1.1
689,394 + MPMX19_04325 0.46 -0.5
689,394 + MPMX19_04325 0.46 -1.5
689,394 + MPMX19_04325 0.46 -0.1
689,394 + MPMX19_04325 0.46 -0.4
689,394 + MPMX19_04325 0.46 -1.4
689,394 + MPMX19_04325 0.46 -0.0
689,394 + MPMX19_04325 0.46 +0.4
689,394 + MPMX19_04325 0.46 -0.2
689,394 + MPMX19_04325 0.46 -0.8
689,395 - MPMX19_04325 0.46 +0.5
689,395 - MPMX19_04325 0.46 -1.1
689,395 - MPMX19_04325 0.46 -0.7
689,395 - MPMX19_04325 0.46 +0.6
689,395 - MPMX19_04325 0.46 -1.9
689,395 - MPMX19_04325 0.46 -0.8
689,395 - MPMX19_04325 0.46 -0.3
689,395 - MPMX19_04325 0.46 -0.4
689,568 + MPMX19_04325 0.71 -0.4
689,568 + MPMX19_04325 0.71 -0.6
689,568 + MPMX19_04325 0.71 +0.2
689,568 + MPMX19_04325 0.71 +0.4
689,568 + MPMX19_04325 0.71 -1.7
689,569 - MPMX19_04325 0.72 +0.4
689,569 - MPMX19_04325 0.72 -2.3
689,569 - MPMX19_04325 0.72 +0.9
689,569 - MPMX19_04325 0.72 -0.7
689,569 - MPMX19_04325 0.72 -2.0
689,569 - MPMX19_04325 0.72 -1.0
689,569 - MPMX19_04325 0.72 -0.0
689,569 - MPMX19_04325 0.72 -1.3
690,465 - MPMX19_04326 0.66 -0.4
690,465 - MPMX19_04326 0.66 -0.6
690,465 - MPMX19_04326 0.66 +1.3
690,465 - MPMX19_04326 0.66 +0.0
690,465 - MPMX19_04326 0.66 +0.5
690,465 - MPMX19_04326 0.66 +0.0
690,465 - MPMX19_04326 0.66 -1.6
690,465 - MPMX19_04326 0.66 +0.9
690,465 - MPMX19_04326 0.66 -0.6
690,465 - MPMX19_04326 0.66 -0.6
690,465 - MPMX19_04326 0.66 -0.2
690,465 - MPMX19_04326 0.66 -0.1
690,465 - MPMX19_04326 0.66 -0.3
690,465 - MPMX19_04326 0.66 -0.1
690,465 - MPMX19_04326 0.66 +0.6
690,465 - MPMX19_04326 0.66 -1.3
690,465 - MPMX19_04326 0.66 -0.5

Or see this region's nucleotide sequence