Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04285 and MPMX19_04286 are separated by 32 nucleotides MPMX19_04286 and MPMX19_04287 are separated by 93 nucleotides
MPMX19_04285: MPMX19_04285 - Homoserine O-acetyltransferase, at 643,931 to 645,145
_04285
MPMX19_04286: MPMX19_04286 - hypothetical protein, at 645,178 to 645,705
_04286
MPMX19_04287: MPMX19_04287 - Colistin resistance protein EmrB, at 645,799 to 647,352
_04287
Position (kb) 645
646 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.183 kb on - strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.202 kb on - strand, within MPMX19_04285 at 644.202 kb on - strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.378 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.651 kb on + strand, within MPMX19_04285 at 644.651 kb on + strand, within MPMX19_04285 at 644.651 kb on + strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.798 kb on + strand, within MPMX19_04285 at 644.798 kb on + strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.870 kb on + strand, within MPMX19_04285 at 644.870 kb on + strand, within MPMX19_04285 at 644.870 kb on + strand, within MPMX19_04285 at 644.870 kb on + strand, within MPMX19_04285 at 644.871 kb on - strand, within MPMX19_04285 at 644.871 kb on - strand, within MPMX19_04285 at 644.871 kb on - strand, within MPMX19_04285 at 644.871 kb on - strand, within MPMX19_04285 at 644.871 kb on - strand, within MPMX19_04285 at 645.050 kb on + strand at 645.050 kb on + strand at 645.050 kb on + strand at 645.050 kb on + strand at 645.050 kb on + strand at 645.050 kb on + strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.051 kb on - strand at 645.143 kb on + strand at 645.143 kb on + strand at 645.143 kb on + strand at 645.143 kb on + strand at 645.144 kb on - strand at 645.144 kb on - strand at 645.144 kb on - strand at 645.179 kb on + strand at 645.179 kb on + strand at 645.179 kb on + strand at 645.179 kb on + strand at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.302 kb on + strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.303 kb on - strand, within MPMX19_04286 at 645.575 kb on + strand, within MPMX19_04286 at 645.575 kb on + strand, within MPMX19_04286 at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.689 kb on + strand at 645.690 kb on - strand at 645.690 kb on - strand at 645.690 kb on - strand at 645.690 kb on - strand at 645.690 kb on - strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.763 kb on + strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.764 kb on - strand at 645.765 kb on + strand at 645.765 kb on + strand at 645.765 kb on + strand at 645.765 kb on + strand at 645.765 kb on + strand at 645.765 kb on + strand at 645.766 kb on - strand at 645.766 kb on - strand at 645.766 kb on - strand at 645.766 kb on - strand at 645.766 kb on - strand at 645.766 kb on - strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.789 kb on + strand at 645.790 kb on - strand at 645.790 kb on - strand at 645.790 kb on - strand at 645.790 kb on - strand at 646.139 kb on + strand, within MPMX19_04287 at 646.139 kb on + strand, within MPMX19_04287 at 646.139 kb on + strand, within MPMX19_04287 at 646.139 kb on + strand, within MPMX19_04287 at 646.139 kb on + strand, within MPMX19_04287 at 646.139 kb on + strand, within MPMX19_04287 at 646.140 kb on - strand, within MPMX19_04287 at 646.140 kb on - strand, within MPMX19_04287 at 646.140 kb on - strand, within MPMX19_04287 at 646.140 kb on - strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.475 kb on + strand, within MPMX19_04287 at 646.476 kb on - strand, within MPMX19_04287 at 646.476 kb on - strand, within MPMX19_04287 at 646.487 kb on + strand, within MPMX19_04287 at 646.488 kb on - strand, within MPMX19_04287 at 646.514 kb on + strand, within MPMX19_04287 at 646.514 kb on + strand, within MPMX19_04287 at 646.514 kb on + strand, within MPMX19_04287 at 646.514 kb on + strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.515 kb on - strand, within MPMX19_04287 at 646.578 kb on - strand, within MPMX19_04287 at 646.578 kb on - strand, within MPMX19_04287 at 646.688 kb on + strand, within MPMX19_04287 at 646.688 kb on + strand, within MPMX19_04287 at 646.688 kb on + strand, within MPMX19_04287 at 646.688 kb on + strand, within MPMX19_04287 at 646.688 kb on + strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287 at 646.689 kb on - strand, within MPMX19_04287
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 644,182 + MPMX19_04285 0.21 -1.6 644,182 + MPMX19_04285 0.21 -0.7 644,182 + MPMX19_04285 0.21 -1.3 644,182 + MPMX19_04285 0.21 +0.4 644,183 - MPMX19_04285 0.21 -1.1 644,201 + MPMX19_04285 0.22 -1.6 644,201 + MPMX19_04285 0.22 +0.6 644,201 + MPMX19_04285 0.22 -0.3 644,201 + MPMX19_04285 0.22 -0.7 644,202 - MPMX19_04285 0.22 +0.6 644,202 - MPMX19_04285 0.22 -0.6 644,276 + MPMX19_04285 0.28 +0.6 644,276 + MPMX19_04285 0.28 -1.8 644,276 + MPMX19_04285 0.28 -0.5 644,276 + MPMX19_04285 0.28 +0.2 644,276 + MPMX19_04285 0.28 -0.8 644,276 + MPMX19_04285 0.28 +0.0 644,277 - MPMX19_04285 0.28 -0.8 644,277 - MPMX19_04285 0.28 -1.3 644,277 - MPMX19_04285 0.28 -0.3 644,277 - MPMX19_04285 0.28 -0.8 644,378 + MPMX19_04285 0.37 +0.1 644,648 + MPMX19_04285 0.59 -0.3 644,648 + MPMX19_04285 0.59 -1.0 644,648 + MPMX19_04285 0.59 -0.7 644,648 + MPMX19_04285 0.59 -0.3 644,648 + MPMX19_04285 0.59 -1.3 644,648 + MPMX19_04285 0.59 -0.3 644,649 - MPMX19_04285 0.59 -1.0 644,649 - MPMX19_04285 0.59 -0.1 644,649 - MPMX19_04285 0.59 -1.5 644,649 - MPMX19_04285 0.59 -0.4 644,649 - MPMX19_04285 0.59 -2.1 644,649 - MPMX19_04285 0.59 +0.3 644,649 - MPMX19_04285 0.59 +0.1 644,651 + MPMX19_04285 0.59 +1.4 644,651 + MPMX19_04285 0.59 +0.2 644,651 + MPMX19_04285 0.59 -1.1 644,652 - MPMX19_04285 0.59 +0.2 644,652 - MPMX19_04285 0.59 +0.8 644,652 - MPMX19_04285 0.59 +0.8 644,652 - MPMX19_04285 0.59 -2.0 644,798 + MPMX19_04285 0.71 -1.7 644,798 + MPMX19_04285 0.71 -0.4 644,799 - MPMX19_04285 0.71 -0.6 644,799 - MPMX19_04285 0.71 -0.5 644,799 - MPMX19_04285 0.71 -0.1 644,799 - MPMX19_04285 0.71 -0.8 644,799 - MPMX19_04285 0.71 -0.1 644,870 + MPMX19_04285 0.77 -1.2 644,870 + MPMX19_04285 0.77 -0.8 644,870 + MPMX19_04285 0.77 -1.6 644,870 + MPMX19_04285 0.77 +1.7 644,871 - MPMX19_04285 0.77 +0.2 644,871 - MPMX19_04285 0.77 +1.6 644,871 - MPMX19_04285 0.77 -0.6 644,871 - MPMX19_04285 0.77 -1.8 644,871 - MPMX19_04285 0.77 -0.0 645,050 + +0.8 645,050 + -1.2 645,050 + -0.3 645,050 + +1.0 645,050 + +0.3 645,050 + +0.1 645,051 - +1.4 645,051 - +0.4 645,051 - +0.9 645,051 - -0.1 645,051 - -0.4 645,051 - +1.0 645,051 - -0.1 645,051 - -1.3 645,143 + -0.9 645,143 + +0.6 645,143 + -1.8 645,143 + +1.2 645,144 - -0.3 645,144 - -1.8 645,144 - +0.7 645,179 + -1.0 645,179 + -1.6 645,179 + -0.8 645,179 + -0.9 645,302 + MPMX19_04286 0.23 -1.6 645,302 + MPMX19_04286 0.23 +1.2 645,302 + MPMX19_04286 0.23 -1.6 645,302 + MPMX19_04286 0.23 -0.2 645,302 + MPMX19_04286 0.23 -0.1 645,302 + MPMX19_04286 0.23 +0.9 645,302 + MPMX19_04286 0.23 -0.7 645,302 + MPMX19_04286 0.23 -0.7 645,302 + MPMX19_04286 0.23 -0.8 645,302 + MPMX19_04286 0.23 -0.5 645,302 + MPMX19_04286 0.23 -2.2 645,303 - MPMX19_04286 0.24 -2.2 645,303 - MPMX19_04286 0.24 -0.6 645,303 - MPMX19_04286 0.24 -1.1 645,303 - MPMX19_04286 0.24 +0.8 645,303 - MPMX19_04286 0.24 -2.1 645,303 - MPMX19_04286 0.24 -0.4 645,303 - MPMX19_04286 0.24 +1.9 645,303 - MPMX19_04286 0.24 -1.0 645,303 - MPMX19_04286 0.24 -1.0 645,303 - MPMX19_04286 0.24 -0.8 645,575 + MPMX19_04286 0.75 -0.4 645,575 + MPMX19_04286 0.75 -2.9 645,689 + -0.1 645,689 + -1.8 645,689 + -0.1 645,689 + -0.4 645,689 + +1.2 645,689 + -0.2 645,689 + +0.7 645,689 + +0.3 645,690 - -0.3 645,690 - +0.1 645,690 - +0.7 645,690 - -0.8 645,690 - -1.3 645,763 + -1.2 645,763 + -0.4 645,763 + -1.4 645,763 + +0.0 645,763 + +0.6 645,763 + +0.6 645,763 + +1.2 645,763 + -0.6 645,763 + +1.5 645,763 + +0.0 645,763 + +0.4 645,763 + -0.7 645,763 + -1.3 645,764 - -1.5 645,764 - -1.0 645,764 - -0.3 645,764 - -1.1 645,764 - -0.4 645,764 - +0.2 645,764 - -1.0 645,764 - -2.2 645,765 + +1.8 645,765 + +0.2 645,765 + +1.9 645,765 + +0.2 645,765 + -1.9 645,765 + -0.3 645,766 - -1.1 645,766 - -1.3 645,766 - -0.6 645,766 - -0.4 645,766 - -0.6 645,766 - -0.8 645,789 + -0.6 645,789 + -0.6 645,789 + +0.0 645,789 + -1.7 645,789 + -0.1 645,789 + -1.1 645,789 + -0.4 645,789 + +1.4 645,789 + -1.3 645,790 - -0.8 645,790 - +0.6 645,790 - -0.6 645,790 - +0.6 646,139 + MPMX19_04287 0.22 -0.4 646,139 + MPMX19_04287 0.22 -1.9 646,139 + MPMX19_04287 0.22 -0.8 646,139 + MPMX19_04287 0.22 -0.6 646,139 + MPMX19_04287 0.22 -0.1 646,139 + MPMX19_04287 0.22 +0.6 646,140 - MPMX19_04287 0.22 -0.9 646,140 - MPMX19_04287 0.22 +0.2 646,140 - MPMX19_04287 0.22 -1.6 646,140 - MPMX19_04287 0.22 -1.3 646,475 + MPMX19_04287 0.44 -1.5 646,475 + MPMX19_04287 0.44 -1.5 646,475 + MPMX19_04287 0.44 -0.7 646,475 + MPMX19_04287 0.44 +1.0 646,475 + MPMX19_04287 0.44 -0.1 646,475 + MPMX19_04287 0.44 -1.4 646,476 - MPMX19_04287 0.44 +0.4 646,476 - MPMX19_04287 0.44 -0.3 646,487 + MPMX19_04287 0.44 -0.8 646,488 - MPMX19_04287 0.44 -0.1 646,514 + MPMX19_04287 0.46 -1.2 646,514 + MPMX19_04287 0.46 -2.0 646,514 + MPMX19_04287 0.46 -0.1 646,514 + MPMX19_04287 0.46 +0.8 646,515 - MPMX19_04287 0.46 -0.0 646,515 - MPMX19_04287 0.46 -1.1 646,515 - MPMX19_04287 0.46 +0.8 646,515 - MPMX19_04287 0.46 -0.5 646,515 - MPMX19_04287 0.46 -0.1 646,515 - MPMX19_04287 0.46 +0.0 646,578 - MPMX19_04287 0.50 +0.0 646,578 - MPMX19_04287 0.50 +1.1 646,688 + MPMX19_04287 0.57 -1.3 646,688 + MPMX19_04287 0.57 -0.5 646,688 + MPMX19_04287 0.57 -0.4 646,688 + MPMX19_04287 0.57 -0.8 646,688 + MPMX19_04287 0.57 +1.9 646,689 - MPMX19_04287 0.57 -1.5 646,689 - MPMX19_04287 0.57 -0.1 646,689 - MPMX19_04287 0.57 -0.6 646,689 - MPMX19_04287 0.57 -0.6 646,689 - MPMX19_04287 0.57 +0.6 646,689 - MPMX19_04287 0.57 -2.2
Or see this region's nucleotide sequence