Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04225 and MPMX19_04226 are separated by 99 nucleotides MPMX19_04226 and MPMX19_04227 are separated by 21 nucleotides MPMX19_04227 and MPMX19_04228 are separated by 187 nucleotides
MPMX19_04225: MPMX19_04225 - hypothetical protein, at 569,878 to 571,359
_04225
MPMX19_04226: MPMX19_04226 - hypothetical protein, at 571,459 to 571,797
_04226
MPMX19_04227: MPMX19_04227 - hypothetical protein, at 571,819 to 572,067
_04227
MPMX19_04228: MPMX19_04228 - hypothetical protein, at 572,255 to 573,847
_04228
Position (kb) 571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 570.581 kb on + strand, within MPMX19_04225 at 570.581 kb on + strand, within MPMX19_04225 at 570.581 kb on + strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.653 kb on + strand, within MPMX19_04225 at 570.653 kb on + strand, within MPMX19_04225 at 570.654 kb on - strand, within MPMX19_04225 at 571.353 kb on + strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.360 kb on - strand at 571.360 kb on - strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.479 kb on - strand, within MPMX19_04228 at 572.479 kb on - strand, within MPMX19_04228 at 572.479 kb on - strand, within MPMX19_04228 at 572.479 kb on - strand, within MPMX19_04228 at 572.479 kb on - strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.482 kb on - strand, within MPMX19_04228 at 572.482 kb on - strand, within MPMX19_04228 at 572.482 kb on - strand, within MPMX19_04228 at 572.482 kb on - strand, within MPMX19_04228 at 572.482 kb on - strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.718 kb on + strand, within MPMX19_04228 at 572.724 kb on + strand, within MPMX19_04228 at 572.724 kb on + strand, within MPMX19_04228 at 572.725 kb on - strand, within MPMX19_04228 at 572.725 kb on - strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 570,581 + MPMX19_04225 0.47 -0.5 570,581 + MPMX19_04225 0.47 -1.0 570,581 + MPMX19_04225 0.47 +0.2 570,582 - MPMX19_04225 0.48 -1.0 570,582 - MPMX19_04225 0.48 -0.6 570,582 - MPMX19_04225 0.48 +0.3 570,582 - MPMX19_04225 0.48 -0.4 570,582 - MPMX19_04225 0.48 -1.2 570,653 + MPMX19_04225 0.52 -3.1 570,653 + MPMX19_04225 0.52 +0.4 570,654 - MPMX19_04225 0.52 +0.6 571,353 + +0.7 571,354 - -0.7 571,354 - +0.9 571,354 - -0.1 571,354 - +1.2 571,359 + -1.0 571,359 + -0.2 571,359 + -0.4 571,359 + +0.4 571,360 - +1.2 571,360 - -1.2 571,371 + +0.3 571,371 + -0.9 571,371 + -0.1 571,371 + -0.4 571,371 + -0.7 571,371 + -1.1 571,371 + +0.2 571,371 + +0.2 571,371 + -1.3 571,372 - -0.4 571,372 - -1.4 571,372 - -0.6 571,372 - -0.7 571,372 - -0.7 571,372 - -0.1 571,372 - -1.5 571,372 - +0.1 571,702 + MPMX19_04226 0.72 +1.5 571,702 + MPMX19_04226 0.72 +0.2 571,702 + MPMX19_04226 0.72 +1.8 571,702 + MPMX19_04226 0.72 -0.7 571,702 + MPMX19_04226 0.72 +0.1 571,703 - MPMX19_04226 0.72 +0.0 571,703 - MPMX19_04226 0.72 +1.0 571,703 - MPMX19_04226 0.72 -1.3 571,703 - MPMX19_04226 0.72 +0.8 571,703 - MPMX19_04226 0.72 -1.1 571,703 - MPMX19_04226 0.72 +0.1 571,703 - MPMX19_04226 0.72 -1.1 571,703 - MPMX19_04226 0.72 -0.9 571,703 - MPMX19_04226 0.72 -0.6 571,703 - MPMX19_04226 0.72 -0.4 571,703 - MPMX19_04226 0.72 -2.5 571,703 - MPMX19_04226 0.72 +0.3 571,723 + MPMX19_04226 0.78 +0.4 571,723 + MPMX19_04226 0.78 +0.9 571,723 + MPMX19_04226 0.78 -0.8 572,256 + -1.5 572,256 + -0.5 572,256 + +0.2 572,256 + +0.9 572,256 + -1.1 572,257 - -0.1 572,257 - -0.6 572,257 - -0.6 572,257 - +0.6 572,257 - -0.9 572,478 + MPMX19_04228 0.14 -0.5 572,478 + MPMX19_04228 0.14 +0.3 572,478 + MPMX19_04228 0.14 +0.6 572,478 + MPMX19_04228 0.14 +0.4 572,478 + MPMX19_04228 0.14 -0.3 572,478 + MPMX19_04228 0.14 -0.9 572,478 + MPMX19_04228 0.14 -0.7 572,479 - MPMX19_04228 0.14 +0.2 572,479 - MPMX19_04228 0.14 -0.1 572,479 - MPMX19_04228 0.14 -1.4 572,479 - MPMX19_04228 0.14 +1.8 572,479 - MPMX19_04228 0.14 -0.8 572,481 + MPMX19_04228 0.14 -1.3 572,481 + MPMX19_04228 0.14 +1.7 572,481 + MPMX19_04228 0.14 -1.0 572,481 + MPMX19_04228 0.14 -0.9 572,481 + MPMX19_04228 0.14 -0.1 572,481 + MPMX19_04228 0.14 +1.0 572,481 + MPMX19_04228 0.14 -1.0 572,482 - MPMX19_04228 0.14 -0.7 572,482 - MPMX19_04228 0.14 -1.8 572,482 - MPMX19_04228 0.14 +0.4 572,482 - MPMX19_04228 0.14 +2.2 572,482 - MPMX19_04228 0.14 -0.1 572,531 + MPMX19_04228 0.17 -0.1 572,531 + MPMX19_04228 0.17 -0.3 572,531 + MPMX19_04228 0.17 -1.4 572,531 + MPMX19_04228 0.17 -1.4 572,531 + MPMX19_04228 0.17 -1.7 572,531 + MPMX19_04228 0.17 -0.8 572,532 - MPMX19_04228 0.17 -1.0 572,532 - MPMX19_04228 0.17 -0.7 572,532 - MPMX19_04228 0.17 -0.6 572,532 - MPMX19_04228 0.17 -1.0 572,532 - MPMX19_04228 0.17 -0.1 572,532 - MPMX19_04228 0.17 -1.3 572,532 - MPMX19_04228 0.17 -1.6 572,532 - MPMX19_04228 0.17 -1.1 572,532 - MPMX19_04228 0.17 +0.9 572,718 + MPMX19_04228 0.29 -1.8 572,724 + MPMX19_04228 0.29 -1.3 572,724 + MPMX19_04228 0.29 -1.8 572,725 - MPMX19_04228 0.30 -0.4 572,725 - MPMX19_04228 0.30 -1.1 572,748 + MPMX19_04228 0.31 +0.5 572,748 + MPMX19_04228 0.31 -0.5 572,748 + MPMX19_04228 0.31 -0.6 572,748 + MPMX19_04228 0.31 -0.1 572,748 + MPMX19_04228 0.31 -0.3 572,748 + MPMX19_04228 0.31 -0.2 572,748 + MPMX19_04228 0.31 -1.5 572,748 + MPMX19_04228 0.31 +0.4 572,748 + MPMX19_04228 0.31 +0.0 572,749 - MPMX19_04228 0.31 +1.4 572,749 - MPMX19_04228 0.31 +1.2 572,749 - MPMX19_04228 0.31 -1.3 572,749 - MPMX19_04228 0.31 -0.5 572,749 - MPMX19_04228 0.31 +1.3 572,749 - MPMX19_04228 0.31 -0.6 572,775 + MPMX19_04228 0.33 +0.8 572,775 + MPMX19_04228 0.33 +1.3 572,775 + MPMX19_04228 0.33 -0.4 572,775 + MPMX19_04228 0.33 -0.1 572,775 + MPMX19_04228 0.33 -0.6 572,775 + MPMX19_04228 0.33 -0.1 572,775 + MPMX19_04228 0.33 +0.4 572,775 + MPMX19_04228 0.33 +0.6 572,775 + MPMX19_04228 0.33 +0.2 572,775 + MPMX19_04228 0.33 -1.1 572,775 + MPMX19_04228 0.33 -1.1 572,775 + MPMX19_04228 0.33 -0.3 572,775 + MPMX19_04228 0.33 -0.6 572,775 + MPMX19_04228 0.33 -0.8 572,775 + MPMX19_04228 0.33 +0.6 572,775 + MPMX19_04228 0.33 -0.7 572,775 + MPMX19_04228 0.33 +0.4 572,775 + MPMX19_04228 0.33 -1.7 572,775 + MPMX19_04228 0.33 +0.3 572,775 + MPMX19_04228 0.33 -0.9 572,775 + MPMX19_04228 0.33 +1.0 572,775 + MPMX19_04228 0.33 -0.6 572,775 + MPMX19_04228 0.33 -0.2 572,775 + MPMX19_04228 0.33 +0.6 572,775 + MPMX19_04228 0.33 -0.8 572,775 + MPMX19_04228 0.33 -1.1 572,775 + MPMX19_04228 0.33 -0.8 572,775 + MPMX19_04228 0.33 +0.7 572,775 + MPMX19_04228 0.33 -0.4 572,775 + MPMX19_04228 0.33 -1.0 572,775 + MPMX19_04228 0.33 -1.0 572,775 + MPMX19_04228 0.33 -1.1 572,776 - MPMX19_04228 0.33 +0.6 572,776 - MPMX19_04228 0.33 -0.6 572,776 - MPMX19_04228 0.33 -0.3 572,776 - MPMX19_04228 0.33 +0.6 572,776 - MPMX19_04228 0.33 -1.1 572,776 - MPMX19_04228 0.33 +1.0 572,776 - MPMX19_04228 0.33 -0.2 572,776 - MPMX19_04228 0.33 -0.6 572,776 - MPMX19_04228 0.33 -0.5 572,776 - MPMX19_04228 0.33 -0.4 572,776 - MPMX19_04228 0.33 -1.1 572,776 - MPMX19_04228 0.33 +0.4 572,776 - MPMX19_04228 0.33 +0.7 572,776 - MPMX19_04228 0.33 +0.2 572,776 - MPMX19_04228 0.33 -0.6 572,776 - MPMX19_04228 0.33 +0.2 572,776 - MPMX19_04228 0.33 +0.9 572,776 - MPMX19_04228 0.33 -2.0 572,776 - MPMX19_04228 0.33 -1.1 572,776 - MPMX19_04228 0.33 -0.6 572,776 - MPMX19_04228 0.33 +0.0 572,776 - MPMX19_04228 0.33 -0.4 572,776 - MPMX19_04228 0.33 -0.5 572,776 - MPMX19_04228 0.33 -0.1 572,776 - MPMX19_04228 0.33 -0.3
Or see this region's nucleotide sequence