Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04206 and MPMX19_04207 are separated by 200 nucleotides MPMX19_04207 and MPMX19_04208 are separated by 142 nucleotides MPMX19_04208 and MPMX19_04209 overlap by 4 nucleotides
MPMX19_04206: MPMX19_04206 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 539,152 to 540,210
_04206
MPMX19_04207: MPMX19_04207 - hypothetical protein, at 540,411 to 542,273
_04207
MPMX19_04208: MPMX19_04208 - flagellum biosynthesis repressor protein FlbT, at 542,416 to 542,862
_04208
MPMX19_04209: MPMX19_04209 - Lipopolysaccharide assembly protein B, at 542,859 to 548,912
_04209
Position (kb) 540
541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.524 kb on + strand, within MPMX19_04206 at 539.524 kb on + strand, within MPMX19_04206 at 539.524 kb on + strand, within MPMX19_04206 at 539.524 kb on + strand, within MPMX19_04206 at 539.525 kb on - strand, within MPMX19_04206 at 539.525 kb on - strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.822 kb on + strand, within MPMX19_04206 at 539.822 kb on + strand, within MPMX19_04206 at 539.823 kb on - strand, within MPMX19_04206 at 539.823 kb on - strand, within MPMX19_04206 at 540.275 kb on + strand at 540.275 kb on + strand at 540.275 kb on + strand at 540.276 kb on - strand at 540.276 kb on - strand at 540.338 kb on + strand at 540.338 kb on + strand at 540.338 kb on + strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.407 kb on + strand at 540.407 kb on + strand at 540.407 kb on + strand at 540.408 kb on - strand at 540.408 kb on - strand at 540.408 kb on - strand at 540.426 kb on - strand at 540.816 kb on + strand, within MPMX19_04207 at 540.817 kb on - strand, within MPMX19_04207 at 540.817 kb on - strand, within MPMX19_04207 at 540.817 kb on - strand, within MPMX19_04207 at 540.946 kb on - strand, within MPMX19_04207 at 540.946 kb on - strand, within MPMX19_04207 at 540.946 kb on - strand, within MPMX19_04207 at 541.161 kb on + strand, within MPMX19_04207 at 541.161 kb on + strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.279 kb on - strand at 542.279 kb on - strand at 542.303 kb on - strand at 542.411 kb on + strand at 542.411 kb on + strand at 542.509 kb on + strand, within MPMX19_04208 at 542.510 kb on - strand, within MPMX19_04208 at 542.584 kb on + strand, within MPMX19_04208 at 542.605 kb on + strand, within MPMX19_04208 at 542.606 kb on - strand, within MPMX19_04208 at 542.734 kb on + strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.802 kb on + strand, within MPMX19_04208 at 542.803 kb on - strand, within MPMX19_04208 at 542.803 kb on - strand, within MPMX19_04208 at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.079 kb on - strand at 543.079 kb on - strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.241 kb on - strand at 543.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 539,524 + MPMX19_04206 0.35 -1.5 539,524 + MPMX19_04206 0.35 +1.2 539,524 + MPMX19_04206 0.35 -0.4 539,524 + MPMX19_04206 0.35 +0.4 539,525 - MPMX19_04206 0.35 +0.6 539,525 - MPMX19_04206 0.35 +0.6 539,734 + MPMX19_04206 0.55 +0.4 539,734 + MPMX19_04206 0.55 +0.2 539,734 + MPMX19_04206 0.55 -0.8 539,734 + MPMX19_04206 0.55 -1.6 539,734 + MPMX19_04206 0.55 -0.7 539,735 - MPMX19_04206 0.55 -0.4 539,735 - MPMX19_04206 0.55 -1.4 539,735 - MPMX19_04206 0.55 -1.4 539,735 - MPMX19_04206 0.55 -1.0 539,735 - MPMX19_04206 0.55 -0.3 539,735 - MPMX19_04206 0.55 +0.3 539,735 - MPMX19_04206 0.55 +0.7 539,735 - MPMX19_04206 0.55 -0.6 539,735 - MPMX19_04206 0.55 +1.2 539,735 - MPMX19_04206 0.55 +1.2 539,735 - MPMX19_04206 0.55 -1.0 539,735 - MPMX19_04206 0.55 +1.0 539,822 + MPMX19_04206 0.63 -0.9 539,822 + MPMX19_04206 0.63 -2.3 539,823 - MPMX19_04206 0.63 -1.2 539,823 - MPMX19_04206 0.63 -1.8 540,275 + -0.3 540,275 + -0.5 540,275 + +0.6 540,276 - -0.9 540,276 - -1.2 540,338 + +0.7 540,338 + -0.8 540,338 + +0.7 540,339 - +1.6 540,339 - +0.1 540,339 - +0.2 540,339 - -0.5 540,339 - -1.4 540,407 + +0.6 540,407 + -1.8 540,407 + -0.2 540,408 - +0.3 540,408 - -0.6 540,408 - -0.8 540,426 - -1.2 540,816 + MPMX19_04207 0.22 -1.3 540,817 - MPMX19_04207 0.22 +0.8 540,817 - MPMX19_04207 0.22 +0.2 540,817 - MPMX19_04207 0.22 -1.9 540,946 - MPMX19_04207 0.29 +0.6 540,946 - MPMX19_04207 0.29 -1.1 540,946 - MPMX19_04207 0.29 -0.5 541,161 + MPMX19_04207 0.40 +0.9 541,161 + MPMX19_04207 0.40 -0.9 541,162 - MPMX19_04207 0.40 +1.2 541,162 - MPMX19_04207 0.40 -0.6 541,162 - MPMX19_04207 0.40 -2.0 541,162 - MPMX19_04207 0.40 -2.1 541,162 - MPMX19_04207 0.40 -1.6 541,162 - MPMX19_04207 0.40 +0.1 542,271 + -2.2 542,271 + -0.2 542,271 + -1.5 542,271 + -0.6 542,271 + +0.4 542,271 + -0.4 542,278 + -0.7 542,278 + +0.9 542,278 + -1.6 542,278 + -0.7 542,278 + +0.8 542,278 + -0.8 542,279 - +2.4 542,279 - -1.0 542,303 - -0.8 542,411 + -0.3 542,411 + -0.4 542,509 + MPMX19_04208 0.21 -1.0 542,510 - MPMX19_04208 0.21 -0.7 542,584 + MPMX19_04208 0.38 -1.1 542,605 + MPMX19_04208 0.42 -0.3 542,606 - MPMX19_04208 0.43 -1.0 542,734 + MPMX19_04208 0.71 -1.0 542,735 - MPMX19_04208 0.71 -1.3 542,735 - MPMX19_04208 0.71 -1.2 542,735 - MPMX19_04208 0.71 -1.2 542,735 - MPMX19_04208 0.71 -0.8 542,735 - MPMX19_04208 0.71 +0.2 542,802 + MPMX19_04208 0.86 -1.1 542,803 - MPMX19_04208 0.87 -2.4 542,803 - MPMX19_04208 0.87 -0.4 543,078 + -1.0 543,078 + -0.8 543,078 + -1.2 543,078 + +0.2 543,078 + -3.3 543,078 + -2.9 543,078 + +0.3 543,079 - -1.1 543,079 - -0.5 543,138 + -0.3 543,138 + -1.4 543,138 + -0.4 543,138 + +0.8 543,138 + -0.6 543,138 + -1.5 543,138 + -1.2 543,138 + -0.8 543,138 + -0.9 543,138 + +0.6 543,138 + +0.4 543,138 + +0.0 543,138 + -0.8 543,138 + +0.3 543,138 + -1.6 543,138 + +1.2 543,139 - -1.4 543,139 - -1.2 543,139 - -1.8 543,139 - +0.2 543,139 - -0.2 543,139 - -0.7 543,168 + +0.3 543,168 + +0.7 543,168 + -0.2 543,168 + -0.0 543,168 + -0.2 543,169 - -0.2 543,169 - +0.3 543,169 - -0.9 543,169 - +0.3 543,169 - -0.4 543,169 - -0.1 543,180 + +0.2 543,180 + +0.2 543,180 + -1.1 543,180 + -0.5 543,180 + -0.4 543,180 + -0.0 543,180 + +0.6 543,180 + -0.4 543,180 + -0.7 543,180 + -2.1 543,180 + -0.4 543,180 + +0.6 543,180 + +0.2 543,181 - -1.3 543,181 - -0.8 543,181 - -1.5 543,181 - -1.3 543,181 - -0.2 543,181 - -1.3 543,181 - -0.7 543,181 - +1.3 543,181 - -0.6 543,181 - -2.2 543,240 + -0.8 543,240 + -0.1 543,240 + -1.2 543,240 + -0.8 543,240 + -0.1 543,241 - -1.4 543,241 - -1.6
Or see this region's nucleotide sequence