Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04198 and MPMX19_04199 are separated by 117 nucleotides MPMX19_04199 and MPMX19_04200 overlap by 8 nucleotides MPMX19_04200 and MPMX19_04201 are separated by 32 nucleotides
MPMX19_04198: MPMX19_04198 - hypothetical protein, at 532,243 to 533,844
_04198
MPMX19_04199: MPMX19_04199 - Pseudaminic acid synthase, at 533,962 to 535,017
_04199
MPMX19_04200: MPMX19_04200 - 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase, at 535,010 to 535,774
_04200
MPMX19_04201: MPMX19_04201 - hypothetical protein, at 535,807 to 536,040
_04201
Position (kb)
533
534
535
536 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 533.026 kb on + strand, within MPMX19_04198 at 533.026 kb on + strand, within MPMX19_04198 at 533.026 kb on + strand, within MPMX19_04198 at 533.027 kb on - strand, within MPMX19_04198 at 533.027 kb on - strand, within MPMX19_04198 at 533.027 kb on - strand, within MPMX19_04198 at 533.080 kb on + strand, within MPMX19_04198 at 533.081 kb on - strand, within MPMX19_04198 at 533.081 kb on - strand, within MPMX19_04198 at 533.164 kb on + strand, within MPMX19_04198 at 533.165 kb on - strand, within MPMX19_04198 at 533.203 kb on + strand, within MPMX19_04198 at 533.203 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.509 kb on + strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.510 kb on - strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.569 kb on + strand, within MPMX19_04198 at 533.570 kb on - strand, within MPMX19_04198 at 533.570 kb on - strand, within MPMX19_04198 at 533.570 kb on - strand, within MPMX19_04198 at 533.570 kb on - strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.665 kb on + strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.666 kb on - strand, within MPMX19_04198 at 533.788 kb on + strand at 533.789 kb on - strand at 533.789 kb on - strand at 533.789 kb on - strand at 533.789 kb on - strand at 533.842 kb on + strand at 533.842 kb on + strand at 533.843 kb on - strand at 534.004 kb on + strand at 534.004 kb on + strand at 534.005 kb on - strand at 534.005 kb on - strand at 534.005 kb on - strand at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.112 kb on + strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.113 kb on - strand, within MPMX19_04199 at 534.202 kb on + strand, within MPMX19_04199 at 534.203 kb on - strand, within MPMX19_04199 at 534.775 kb on + strand, within MPMX19_04199 at 534.775 kb on + strand, within MPMX19_04199 at 534.775 kb on + strand, within MPMX19_04199 at 534.776 kb on - strand, within MPMX19_04199 at 534.811 kb on + strand, within MPMX19_04199 at 534.812 kb on - strand, within MPMX19_04199 at 534.812 kb on - strand, within MPMX19_04199 at 534.812 kb on - strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.826 kb on + strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 534.827 kb on - strand, within MPMX19_04199 at 535.015 kb on + strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.016 kb on - strand at 535.266 kb on + strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.267 kb on - strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.400 kb on + strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.401 kb on - strand, within MPMX19_04200 at 535.425 kb on - strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.523 kb on + strand, within MPMX19_04200 at 535.524 kb on - strand, within MPMX19_04200 at 535.530 kb on - strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.634 kb on + strand, within MPMX19_04200 at 535.635 kb on - strand, within MPMX19_04200 at 535.635 kb on - strand, within MPMX19_04200 at 535.635 kb on - strand, within MPMX19_04200
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 533,026 + MPMX19_04198 0.49 -2.0 533,026 + MPMX19_04198 0.49 +0.1 533,026 + MPMX19_04198 0.49 +0.7 533,027 - MPMX19_04198 0.49 -1.0 533,027 - MPMX19_04198 0.49 -1.0 533,027 - MPMX19_04198 0.49 -0.6 533,080 + MPMX19_04198 0.52 -0.0 533,081 - MPMX19_04198 0.52 +0.0 533,081 - MPMX19_04198 0.52 -0.1 533,164 + MPMX19_04198 0.57 -0.3 533,165 - MPMX19_04198 0.58 -2.1 533,203 + MPMX19_04198 0.60 -0.8 533,203 + MPMX19_04198 0.60 -0.3 533,509 + MPMX19_04198 0.79 +0.3 533,509 + MPMX19_04198 0.79 -1.0 533,509 + MPMX19_04198 0.79 -0.5 533,509 + MPMX19_04198 0.79 +1.3 533,509 + MPMX19_04198 0.79 -0.2 533,509 + MPMX19_04198 0.79 +0.9 533,509 + MPMX19_04198 0.79 -2.2 533,509 + MPMX19_04198 0.79 +0.4 533,509 + MPMX19_04198 0.79 +0.1 533,509 + MPMX19_04198 0.79 -2.7 533,509 + MPMX19_04198 0.79 +0.7 533,509 + MPMX19_04198 0.79 -0.6 533,509 + MPMX19_04198 0.79 -0.2 533,509 + MPMX19_04198 0.79 -0.9 533,509 + MPMX19_04198 0.79 +0.1 533,509 + MPMX19_04198 0.79 -0.4 533,509 + MPMX19_04198 0.79 +0.4 533,509 + MPMX19_04198 0.79 -1.1 533,509 + MPMX19_04198 0.79 +0.8 533,509 + MPMX19_04198 0.79 +0.2 533,509 + MPMX19_04198 0.79 -0.2 533,509 + MPMX19_04198 0.79 -0.6 533,509 + MPMX19_04198 0.79 -0.9 533,509 + MPMX19_04198 0.79 +0.2 533,509 + MPMX19_04198 0.79 -0.6 533,510 - MPMX19_04198 0.79 -0.7 533,510 - MPMX19_04198 0.79 -0.3 533,510 - MPMX19_04198 0.79 -1.1 533,510 - MPMX19_04198 0.79 -0.3 533,510 - MPMX19_04198 0.79 -0.7 533,510 - MPMX19_04198 0.79 +0.2 533,510 - MPMX19_04198 0.79 -0.4 533,510 - MPMX19_04198 0.79 -0.7 533,510 - MPMX19_04198 0.79 -0.5 533,510 - MPMX19_04198 0.79 -1.0 533,510 - MPMX19_04198 0.79 -0.0 533,510 - MPMX19_04198 0.79 +2.2 533,569 + MPMX19_04198 0.83 -0.2 533,569 + MPMX19_04198 0.83 -0.7 533,569 + MPMX19_04198 0.83 -1.2 533,569 + MPMX19_04198 0.83 -1.8 533,569 + MPMX19_04198 0.83 -0.7 533,569 + MPMX19_04198 0.83 -0.4 533,569 + MPMX19_04198 0.83 -0.8 533,570 - MPMX19_04198 0.83 -0.6 533,570 - MPMX19_04198 0.83 -1.3 533,570 - MPMX19_04198 0.83 +2.6 533,570 - MPMX19_04198 0.83 -0.6 533,665 + MPMX19_04198 0.89 -1.8 533,665 + MPMX19_04198 0.89 -0.0 533,665 + MPMX19_04198 0.89 -0.9 533,665 + MPMX19_04198 0.89 -0.7 533,665 + MPMX19_04198 0.89 +0.6 533,665 + MPMX19_04198 0.89 -0.2 533,665 + MPMX19_04198 0.89 -2.0 533,665 + MPMX19_04198 0.89 +0.4 533,666 - MPMX19_04198 0.89 +0.2 533,666 - MPMX19_04198 0.89 -0.6 533,666 - MPMX19_04198 0.89 -1.3 533,666 - MPMX19_04198 0.89 +1.5 533,666 - MPMX19_04198 0.89 +1.0 533,666 - MPMX19_04198 0.89 +1.2 533,788 + -0.8 533,789 - -1.3 533,789 - -0.9 533,789 - -0.7 533,789 - -1.2 533,842 + -0.6 533,842 + -1.3 533,843 - -1.9 534,004 + +0.3 534,004 + +0.4 534,005 - +0.4 534,005 - -0.0 534,005 - -0.2 534,112 + MPMX19_04199 0.14 -0.8 534,112 + MPMX19_04199 0.14 -2.4 534,112 + MPMX19_04199 0.14 -0.6 534,112 + MPMX19_04199 0.14 -0.3 534,112 + MPMX19_04199 0.14 -2.3 534,112 + MPMX19_04199 0.14 -0.8 534,112 + MPMX19_04199 0.14 -1.3 534,112 + MPMX19_04199 0.14 -0.9 534,112 + MPMX19_04199 0.14 +0.8 534,112 + MPMX19_04199 0.14 -0.0 534,112 + MPMX19_04199 0.14 +0.2 534,112 + MPMX19_04199 0.14 +0.8 534,112 + MPMX19_04199 0.14 -0.3 534,112 + MPMX19_04199 0.14 -0.3 534,113 - MPMX19_04199 0.14 +0.2 534,113 - MPMX19_04199 0.14 +0.6 534,113 - MPMX19_04199 0.14 +0.0 534,113 - MPMX19_04199 0.14 -1.6 534,113 - MPMX19_04199 0.14 -1.4 534,113 - MPMX19_04199 0.14 -2.0 534,113 - MPMX19_04199 0.14 -1.3 534,113 - MPMX19_04199 0.14 -2.7 534,113 - MPMX19_04199 0.14 -0.1 534,113 - MPMX19_04199 0.14 -1.3 534,202 + MPMX19_04199 0.23 -0.6 534,203 - MPMX19_04199 0.23 -1.4 534,775 + MPMX19_04199 0.77 +0.4 534,775 + MPMX19_04199 0.77 -1.0 534,775 + MPMX19_04199 0.77 -1.2 534,776 - MPMX19_04199 0.77 +1.2 534,811 + MPMX19_04199 0.80 -0.5 534,812 - MPMX19_04199 0.80 -2.7 534,812 - MPMX19_04199 0.80 -0.6 534,812 - MPMX19_04199 0.80 -1.2 534,826 + MPMX19_04199 0.82 -0.6 534,826 + MPMX19_04199 0.82 -1.3 534,826 + MPMX19_04199 0.82 -1.0 534,826 + MPMX19_04199 0.82 -0.8 534,826 + MPMX19_04199 0.82 -1.6 534,826 + MPMX19_04199 0.82 -0.5 534,826 + MPMX19_04199 0.82 -0.2 534,826 + MPMX19_04199 0.82 -0.6 534,826 + MPMX19_04199 0.82 -0.7 534,826 + MPMX19_04199 0.82 -0.6 534,826 + MPMX19_04199 0.82 -1.2 534,826 + MPMX19_04199 0.82 -0.8 534,826 + MPMX19_04199 0.82 -2.6 534,827 - MPMX19_04199 0.82 -0.7 534,827 - MPMX19_04199 0.82 -0.5 534,827 - MPMX19_04199 0.82 +0.2 534,827 - MPMX19_04199 0.82 -2.8 534,827 - MPMX19_04199 0.82 -0.3 534,827 - MPMX19_04199 0.82 -1.8 534,827 - MPMX19_04199 0.82 -0.6 534,827 - MPMX19_04199 0.82 -1.4 534,827 - MPMX19_04199 0.82 -2.7 534,827 - MPMX19_04199 0.82 -0.6 534,827 - MPMX19_04199 0.82 -1.6 534,827 - MPMX19_04199 0.82 -0.0 534,827 - MPMX19_04199 0.82 -0.6 535,015 + -0.6 535,016 - +0.2 535,016 - +0.2 535,016 - -0.4 535,016 - +1.9 535,016 - -1.4 535,266 + MPMX19_04200 0.33 -0.6 535,267 - MPMX19_04200 0.34 -0.6 535,267 - MPMX19_04200 0.34 -1.6 535,267 - MPMX19_04200 0.34 -2.4 535,267 - MPMX19_04200 0.34 +0.9 535,267 - MPMX19_04200 0.34 -0.5 535,267 - MPMX19_04200 0.34 -1.3 535,267 - MPMX19_04200 0.34 -1.6 535,400 + MPMX19_04200 0.51 -1.0 535,400 + MPMX19_04200 0.51 -0.9 535,400 + MPMX19_04200 0.51 -0.0 535,400 + MPMX19_04200 0.51 -1.1 535,400 + MPMX19_04200 0.51 -0.2 535,400 + MPMX19_04200 0.51 -1.0 535,400 + MPMX19_04200 0.51 -0.0 535,400 + MPMX19_04200 0.51 +0.6 535,400 + MPMX19_04200 0.51 -3.0 535,400 + MPMX19_04200 0.51 -1.4 535,400 + MPMX19_04200 0.51 +0.6 535,400 + MPMX19_04200 0.51 -1.1 535,400 + MPMX19_04200 0.51 -1.1 535,400 + MPMX19_04200 0.51 +0.3 535,401 - MPMX19_04200 0.51 +0.1 535,401 - MPMX19_04200 0.51 -1.8 535,401 - MPMX19_04200 0.51 -2.0 535,401 - MPMX19_04200 0.51 -2.4 535,401 - MPMX19_04200 0.51 -0.3 535,401 - MPMX19_04200 0.51 -0.5 535,425 - MPMX19_04200 0.54 +0.8 535,523 + MPMX19_04200 0.67 -1.1 535,523 + MPMX19_04200 0.67 +0.7 535,523 + MPMX19_04200 0.67 +0.1 535,523 + MPMX19_04200 0.67 -0.5 535,523 + MPMX19_04200 0.67 -0.7 535,524 - MPMX19_04200 0.67 +0.9 535,530 - MPMX19_04200 0.68 -0.0 535,634 + MPMX19_04200 0.82 -0.6 535,634 + MPMX19_04200 0.82 +0.6 535,634 + MPMX19_04200 0.82 -2.0 535,634 + MPMX19_04200 0.82 -0.7 535,634 + MPMX19_04200 0.82 -2.4 535,634 + MPMX19_04200 0.82 -0.8 535,635 - MPMX19_04200 0.82 -0.4 535,635 - MPMX19_04200 0.82 -0.6 535,635 - MPMX19_04200 0.82 +0.6
Or see this region's nucleotide sequence