Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04192 and MPMX19_04193 are separated by 281 nucleotides MPMX19_04193 and MPMX19_04194 are separated by 19 nucleotides MPMX19_04194 and MPMX19_04195 are separated by 614 nucleotides
MPMX19_04192: MPMX19_04192 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 525,844 to 526,605
_04192
MPMX19_04193: MPMX19_04193 - hypothetical protein, at 526,887 to 527,288
_04193
MPMX19_04194: MPMX19_04194 - hypothetical protein, at 527,308 to 527,652
_04194
MPMX19_04195: MPMX19_04195 - Sensor histidine kinase RcsC, at 528,267 to 530,489
_04195
Position (kb) 527
528 Strain fitness (log2 ratio) -2
-1
0
1
2 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.338 kb on - strand, within MPMX19_04192 at 526.338 kb on - strand, within MPMX19_04192 at 526.338 kb on - strand, within MPMX19_04192 at 526.669 kb on - strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.818 kb on - strand at 526.818 kb on - strand at 526.818 kb on - strand at 526.828 kb on + strand at 526.994 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.371 kb on + strand, within MPMX19_04194 at 527.756 kb on - strand at 527.756 kb on - strand at 527.760 kb on - strand at 527.760 kb on - strand at 527.760 kb on - strand at 527.764 kb on + strand at 527.764 kb on + strand at 527.764 kb on + strand at 527.826 kb on + strand at 527.827 kb on - strand at 527.895 kb on - strand at 527.919 kb on - strand at 527.919 kb on - strand at 527.925 kb on + strand at 527.926 kb on - strand at 527.955 kb on + strand at 527.955 kb on + strand at 527.956 kb on - strand at 527.998 kb on + strand at 527.998 kb on + strand at 527.999 kb on - strand at 527.999 kb on - strand at 527.999 kb on - strand at 527.999 kb on - strand at 528.029 kb on + strand at 528.029 kb on + strand at 528.029 kb on + strand at 528.030 kb on - strand at 528.030 kb on - strand at 528.030 kb on - strand at 528.570 kb on + strand, within MPMX19_04195 at 528.570 kb on + strand, within MPMX19_04195 at 528.570 kb on + strand, within MPMX19_04195 at 528.570 kb on + strand, within MPMX19_04195 at 528.570 kb on + strand, within MPMX19_04195 at 528.570 kb on + strand, within MPMX19_04195 at 528.570 kb on + strand, within MPMX19_04195 at 528.570 kb on + strand, within MPMX19_04195 at 528.570 kb on + strand, within MPMX19_04195 at 528.570 kb on + strand, within MPMX19_04195 at 528.570 kb on + strand, within MPMX19_04195 at 528.571 kb on - strand, within MPMX19_04195 at 528.571 kb on - strand, within MPMX19_04195 at 528.571 kb on - strand, within MPMX19_04195 at 528.571 kb on - strand, within MPMX19_04195
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 526,337 + MPMX19_04192 0.65 +0.5 526,337 + MPMX19_04192 0.65 +0.8 526,337 + MPMX19_04192 0.65 -0.9 526,337 + MPMX19_04192 0.65 +0.5 526,337 + MPMX19_04192 0.65 -0.5 526,338 - MPMX19_04192 0.65 -0.4 526,338 - MPMX19_04192 0.65 -1.1 526,338 - MPMX19_04192 0.65 +1.2 526,669 - +0.6 526,779 + +0.4 526,779 + -1.2 526,779 + +0.3 526,779 + +0.6 526,779 + -1.5 526,779 + -0.8 526,779 + +0.4 526,779 + -1.6 526,779 + -0.9 526,779 + -0.1 526,779 + -1.5 526,779 + -1.2 526,780 - -0.8 526,780 - -0.0 526,780 - -0.5 526,780 - -2.1 526,780 - -0.2 526,780 - -0.3 526,780 - -0.3 526,780 - -0.1 526,806 + +0.6 526,806 + +0.6 526,806 + +0.4 526,806 + -1.4 526,806 + -0.4 526,806 + +0.2 526,807 - -0.0 526,807 - +1.1 526,807 - +2.2 526,807 - +0.1 526,807 - -0.1 526,807 - -1.3 526,817 + -0.3 526,817 + +0.2 526,817 + -0.8 526,817 + -0.6 526,817 + -0.2 526,817 + -0.1 526,817 + -1.6 526,817 + -2.1 526,817 + -1.3 526,818 - -1.1 526,818 - -0.1 526,818 - +0.3 526,828 + +1.2 526,994 + MPMX19_04193 0.27 -2.3 527,088 + MPMX19_04193 0.50 -2.2 527,088 + MPMX19_04193 0.50 -0.3 527,088 + MPMX19_04193 0.50 -1.0 527,088 + MPMX19_04193 0.50 -0.8 527,088 + MPMX19_04193 0.50 +1.4 527,088 + MPMX19_04193 0.50 +0.3 527,088 + MPMX19_04193 0.50 -0.1 527,088 + MPMX19_04193 0.50 +1.7 527,088 + MPMX19_04193 0.50 -0.6 527,088 + MPMX19_04193 0.50 -0.7 527,088 + MPMX19_04193 0.50 -0.3 527,088 + MPMX19_04193 0.50 -1.0 527,088 + MPMX19_04193 0.50 -2.4 527,088 + MPMX19_04193 0.50 -0.6 527,088 + MPMX19_04193 0.50 -0.7 527,088 + MPMX19_04193 0.50 -0.8 527,088 + MPMX19_04193 0.50 -0.8 527,088 + MPMX19_04193 0.50 +0.2 527,088 + MPMX19_04193 0.50 -1.5 527,089 - MPMX19_04193 0.50 -2.0 527,089 - MPMX19_04193 0.50 -1.4 527,089 - MPMX19_04193 0.50 +0.6 527,089 - MPMX19_04193 0.50 -0.3 527,089 - MPMX19_04193 0.50 -0.8 527,089 - MPMX19_04193 0.50 -0.6 527,089 - MPMX19_04193 0.50 +0.8 527,089 - MPMX19_04193 0.50 +0.3 527,089 - MPMX19_04193 0.50 +0.6 527,089 - MPMX19_04193 0.50 +0.8 527,089 - MPMX19_04193 0.50 +0.2 527,089 - MPMX19_04193 0.50 -0.4 527,089 - MPMX19_04193 0.50 -0.6 527,371 + MPMX19_04194 0.18 -1.7 527,756 - -0.2 527,756 - +0.2 527,760 - +0.5 527,760 - -1.3 527,760 - -0.4 527,764 + +0.4 527,764 + -1.5 527,764 + -2.0 527,826 + -0.4 527,827 - -1.4 527,895 - -0.5 527,919 - +0.2 527,919 - -0.3 527,925 + +1.2 527,926 - -1.5 527,955 + +0.7 527,955 + -0.6 527,956 - +1.4 527,998 + +0.6 527,998 + -1.0 527,999 - +2.2 527,999 - -1.6 527,999 - -1.2 527,999 - -1.5 528,029 + -0.6 528,029 + +0.2 528,029 + -1.5 528,030 - -0.8 528,030 - -2.2 528,030 - -0.7 528,570 + MPMX19_04195 0.14 -1.3 528,570 + MPMX19_04195 0.14 -0.4 528,570 + MPMX19_04195 0.14 -1.7 528,570 + MPMX19_04195 0.14 -1.2 528,570 + MPMX19_04195 0.14 -1.2 528,570 + MPMX19_04195 0.14 -1.2 528,570 + MPMX19_04195 0.14 -1.0 528,570 + MPMX19_04195 0.14 -1.3 528,570 + MPMX19_04195 0.14 +0.3 528,570 + MPMX19_04195 0.14 -1.0 528,570 + MPMX19_04195 0.14 +0.9 528,571 - MPMX19_04195 0.14 +1.2 528,571 - MPMX19_04195 0.14 +0.6 528,571 - MPMX19_04195 0.14 -0.6 528,571 - MPMX19_04195 0.14 -0.8
Or see this region's nucleotide sequence