Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04191 and MPMX19_04192 are separated by 8 nucleotides MPMX19_04192 and MPMX19_04193 are separated by 281 nucleotides MPMX19_04193 and MPMX19_04194 are separated by 19 nucleotides
MPMX19_04191: MPMX19_04191 - hypothetical protein, at 523,553 to 525,835
_04191
MPMX19_04192: MPMX19_04192 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 525,844 to 526,605
_04192
MPMX19_04193: MPMX19_04193 - hypothetical protein, at 526,887 to 527,288
_04193
MPMX19_04194: MPMX19_04194 - hypothetical protein, at 527,308 to 527,652
_04194
Position (kb) 525
526
527 Strain fitness (log2 ratio) -2
-1
0
1
2 at 524.903 kb on + strand, within MPMX19_04191 at 524.903 kb on + strand, within MPMX19_04191 at 524.903 kb on + strand, within MPMX19_04191 at 524.903 kb on + strand, within MPMX19_04191 at 524.903 kb on + strand, within MPMX19_04191 at 524.903 kb on + strand, within MPMX19_04191 at 524.903 kb on + strand, within MPMX19_04191 at 524.903 kb on + strand, within MPMX19_04191 at 524.903 kb on + strand, within MPMX19_04191 at 524.903 kb on + strand, within MPMX19_04191 at 524.903 kb on + strand, within MPMX19_04191 at 524.903 kb on + strand, within MPMX19_04191 at 524.904 kb on - strand, within MPMX19_04191 at 524.904 kb on - strand, within MPMX19_04191 at 524.904 kb on - strand, within MPMX19_04191 at 524.904 kb on - strand, within MPMX19_04191 at 524.904 kb on - strand, within MPMX19_04191 at 524.904 kb on - strand, within MPMX19_04191 at 525.461 kb on + strand, within MPMX19_04191 at 525.462 kb on - strand, within MPMX19_04191 at 525.476 kb on + strand, within MPMX19_04191 at 525.495 kb on - strand, within MPMX19_04191 at 525.644 kb on + strand at 525.644 kb on + strand at 525.644 kb on + strand at 525.644 kb on + strand at 525.644 kb on + strand at 525.644 kb on + strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.645 kb on - strand at 525.833 kb on + strand at 525.833 kb on + strand at 525.833 kb on + strand at 525.834 kb on - strand at 525.834 kb on - strand at 525.834 kb on - strand at 525.834 kb on - strand at 525.929 kb on + strand, within MPMX19_04192 at 525.929 kb on + strand, within MPMX19_04192 at 525.929 kb on + strand, within MPMX19_04192 at 525.929 kb on + strand, within MPMX19_04192 at 525.930 kb on - strand, within MPMX19_04192 at 525.930 kb on - strand, within MPMX19_04192 at 525.965 kb on + strand, within MPMX19_04192 at 525.965 kb on + strand, within MPMX19_04192 at 525.965 kb on + strand, within MPMX19_04192 at 525.965 kb on + strand, within MPMX19_04192 at 525.965 kb on + strand, within MPMX19_04192 at 525.966 kb on - strand, within MPMX19_04192 at 525.966 kb on - strand, within MPMX19_04192 at 525.966 kb on - strand, within MPMX19_04192 at 526.193 kb on + strand, within MPMX19_04192 at 526.193 kb on + strand, within MPMX19_04192 at 526.193 kb on + strand, within MPMX19_04192 at 526.194 kb on - strand, within MPMX19_04192 at 526.194 kb on - strand, within MPMX19_04192 at 526.194 kb on - strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.337 kb on + strand, within MPMX19_04192 at 526.338 kb on - strand, within MPMX19_04192 at 526.338 kb on - strand, within MPMX19_04192 at 526.338 kb on - strand, within MPMX19_04192 at 526.669 kb on - strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.779 kb on + strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.780 kb on - strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.806 kb on + strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.807 kb on - strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.817 kb on + strand at 526.818 kb on - strand at 526.818 kb on - strand at 526.818 kb on - strand at 526.828 kb on + strand at 526.994 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.088 kb on + strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.089 kb on - strand, within MPMX19_04193 at 527.371 kb on + strand, within MPMX19_04194
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 524,903 + MPMX19_04191 0.59 -1.6 524,903 + MPMX19_04191 0.59 +0.0 524,903 + MPMX19_04191 0.59 -0.6 524,903 + MPMX19_04191 0.59 -0.0 524,903 + MPMX19_04191 0.59 -0.1 524,903 + MPMX19_04191 0.59 +1.4 524,903 + MPMX19_04191 0.59 -0.3 524,903 + MPMX19_04191 0.59 -1.5 524,903 + MPMX19_04191 0.59 -0.5 524,903 + MPMX19_04191 0.59 -1.2 524,903 + MPMX19_04191 0.59 -1.6 524,903 + MPMX19_04191 0.59 -0.3 524,904 - MPMX19_04191 0.59 -1.2 524,904 - MPMX19_04191 0.59 -1.4 524,904 - MPMX19_04191 0.59 -0.6 524,904 - MPMX19_04191 0.59 -0.5 524,904 - MPMX19_04191 0.59 +0.8 524,904 - MPMX19_04191 0.59 +0.4 525,461 + MPMX19_04191 0.84 -0.0 525,462 - MPMX19_04191 0.84 -1.9 525,476 + MPMX19_04191 0.84 +1.6 525,495 - MPMX19_04191 0.85 -0.8 525,644 + +2.2 525,644 + -0.5 525,644 + +0.5 525,644 + +0.2 525,644 + +0.0 525,644 + -1.5 525,645 - -0.3 525,645 - +0.3 525,645 - -0.4 525,645 - +0.2 525,645 - +0.1 525,645 - +0.2 525,645 - +1.2 525,645 - -0.7 525,645 - -0.3 525,645 - -0.0 525,645 - +0.4 525,645 - -0.6 525,645 - -1.5 525,833 + -1.5 525,833 + -0.7 525,833 + -0.2 525,834 - -1.2 525,834 - +1.0 525,834 - +0.5 525,834 - -0.2 525,929 + MPMX19_04192 0.11 -1.3 525,929 + MPMX19_04192 0.11 +0.9 525,929 + MPMX19_04192 0.11 +1.4 525,929 + MPMX19_04192 0.11 +0.0 525,930 - MPMX19_04192 0.11 +0.0 525,930 - MPMX19_04192 0.11 -0.1 525,965 + MPMX19_04192 0.16 -0.3 525,965 + MPMX19_04192 0.16 +0.9 525,965 + MPMX19_04192 0.16 -0.3 525,965 + MPMX19_04192 0.16 +0.3 525,965 + MPMX19_04192 0.16 -0.2 525,966 - MPMX19_04192 0.16 +0.2 525,966 - MPMX19_04192 0.16 -1.7 525,966 - MPMX19_04192 0.16 -0.0 526,193 + MPMX19_04192 0.46 +0.4 526,193 + MPMX19_04192 0.46 +0.2 526,193 + MPMX19_04192 0.46 -1.0 526,194 - MPMX19_04192 0.46 -1.3 526,194 - MPMX19_04192 0.46 -0.8 526,194 - MPMX19_04192 0.46 -0.6 526,337 + MPMX19_04192 0.65 +0.5 526,337 + MPMX19_04192 0.65 +0.8 526,337 + MPMX19_04192 0.65 -0.9 526,337 + MPMX19_04192 0.65 +0.5 526,337 + MPMX19_04192 0.65 -0.5 526,338 - MPMX19_04192 0.65 -0.4 526,338 - MPMX19_04192 0.65 -1.1 526,338 - MPMX19_04192 0.65 +1.2 526,669 - +0.6 526,779 + +0.4 526,779 + -1.2 526,779 + +0.3 526,779 + +0.6 526,779 + -1.5 526,779 + -0.8 526,779 + +0.4 526,779 + -1.6 526,779 + -0.9 526,779 + -0.1 526,779 + -1.5 526,779 + -1.2 526,780 - -0.8 526,780 - -0.0 526,780 - -0.5 526,780 - -2.1 526,780 - -0.2 526,780 - -0.3 526,780 - -0.3 526,780 - -0.1 526,806 + +0.6 526,806 + +0.6 526,806 + +0.4 526,806 + -1.4 526,806 + -0.4 526,806 + +0.2 526,807 - -0.0 526,807 - +1.1 526,807 - +2.2 526,807 - +0.1 526,807 - -0.1 526,807 - -1.3 526,817 + -0.3 526,817 + +0.2 526,817 + -0.8 526,817 + -0.6 526,817 + -0.2 526,817 + -0.1 526,817 + -1.6 526,817 + -2.1 526,817 + -1.3 526,818 - -1.1 526,818 - -0.1 526,818 - +0.3 526,828 + +1.2 526,994 + MPMX19_04193 0.27 -2.3 527,088 + MPMX19_04193 0.50 -2.2 527,088 + MPMX19_04193 0.50 -0.3 527,088 + MPMX19_04193 0.50 -1.0 527,088 + MPMX19_04193 0.50 -0.8 527,088 + MPMX19_04193 0.50 +1.4 527,088 + MPMX19_04193 0.50 +0.3 527,088 + MPMX19_04193 0.50 -0.1 527,088 + MPMX19_04193 0.50 +1.7 527,088 + MPMX19_04193 0.50 -0.6 527,088 + MPMX19_04193 0.50 -0.7 527,088 + MPMX19_04193 0.50 -0.3 527,088 + MPMX19_04193 0.50 -1.0 527,088 + MPMX19_04193 0.50 -2.4 527,088 + MPMX19_04193 0.50 -0.6 527,088 + MPMX19_04193 0.50 -0.7 527,088 + MPMX19_04193 0.50 -0.8 527,088 + MPMX19_04193 0.50 -0.8 527,088 + MPMX19_04193 0.50 +0.2 527,088 + MPMX19_04193 0.50 -1.5 527,089 - MPMX19_04193 0.50 -2.0 527,089 - MPMX19_04193 0.50 -1.4 527,089 - MPMX19_04193 0.50 +0.6 527,089 - MPMX19_04193 0.50 -0.3 527,089 - MPMX19_04193 0.50 -0.8 527,089 - MPMX19_04193 0.50 -0.6 527,089 - MPMX19_04193 0.50 +0.8 527,089 - MPMX19_04193 0.50 +0.3 527,089 - MPMX19_04193 0.50 +0.6 527,089 - MPMX19_04193 0.50 +0.8 527,089 - MPMX19_04193 0.50 +0.2 527,089 - MPMX19_04193 0.50 -0.4 527,089 - MPMX19_04193 0.50 -0.6 527,371 + MPMX19_04194 0.18 -1.7
Or see this region's nucleotide sequence