Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04153 and MPMX19_04154 are separated by 665 nucleotides MPMX19_04154 and MPMX19_04155 are separated by 153 nucleotides
MPMX19_04153: MPMX19_04153 - Type I secretion system membrane fusion protein PrsE, at 465,742 to 467,097
_04153
MPMX19_04154: MPMX19_04154 - hypothetical protein, at 467,763 to 468,581
_04154
MPMX19_04155: MPMX19_04155 - hypothetical protein, at 468,735 to 471,026
_04155
Position (kb) 467
468
469 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 466.921 kb on + strand, within MPMX19_04153 at 466.922 kb on - strand, within MPMX19_04153 at 466.922 kb on - strand, within MPMX19_04153 at 466.922 kb on - strand, within MPMX19_04153 at 466.922 kb on - strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.924 kb on + strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 466.925 kb on - strand, within MPMX19_04153 at 467.044 kb on + strand at 467.044 kb on + strand at 467.044 kb on + strand at 467.045 kb on - strand at 467.045 kb on - strand at 467.045 kb on - strand at 467.095 kb on + strand at 467.095 kb on + strand at 467.095 kb on + strand at 467.095 kb on + strand at 467.096 kb on - strand at 467.096 kb on - strand at 467.244 kb on + strand at 467.282 kb on - strand at 467.282 kb on - strand at 467.286 kb on + strand at 467.289 kb on + strand at 467.562 kb on + strand at 467.596 kb on + strand at 467.596 kb on + strand at 467.596 kb on + strand at 467.596 kb on + strand at 467.617 kb on - strand at 467.617 kb on - strand at 467.650 kb on + strand at 467.651 kb on - strand at 467.670 kb on - strand at 467.716 kb on + strand at 467.716 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.759 kb on + strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.760 kb on - strand at 467.768 kb on + strand at 467.768 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.787 kb on + strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.788 kb on - strand at 467.798 kb on + strand at 467.798 kb on + strand at 467.799 kb on - strand at 467.799 kb on - strand at 467.799 kb on - strand at 467.840 kb on + strand at 467.873 kb on + strand, within MPMX19_04154 at 467.873 kb on + strand, within MPMX19_04154 at 467.873 kb on + strand, within MPMX19_04154 at 467.874 kb on - strand, within MPMX19_04154 at 467.874 kb on - strand, within MPMX19_04154 at 467.874 kb on - strand, within MPMX19_04154 at 467.874 kb on - strand, within MPMX19_04154 at 468.143 kb on + strand, within MPMX19_04154 at 468.143 kb on + strand, within MPMX19_04154 at 468.143 kb on + strand, within MPMX19_04154 at 468.143 kb on + strand, within MPMX19_04154 at 468.143 kb on + strand, within MPMX19_04154 at 468.144 kb on - strand, within MPMX19_04154 at 468.150 kb on + strand, within MPMX19_04154 at 468.150 kb on + strand, within MPMX19_04154 at 468.150 kb on + strand, within MPMX19_04154 at 468.151 kb on - strand, within MPMX19_04154 at 469.554 kb on + strand, within MPMX19_04155 at 469.554 kb on + strand, within MPMX19_04155 at 469.554 kb on + strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155 at 469.555 kb on - strand, within MPMX19_04155
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 466,921 + MPMX19_04153 0.87 +0.3 466,922 - MPMX19_04153 0.87 -1.7 466,922 - MPMX19_04153 0.87 -0.8 466,922 - MPMX19_04153 0.87 +0.6 466,922 - MPMX19_04153 0.87 +0.3 466,924 + MPMX19_04153 0.87 -0.9 466,924 + MPMX19_04153 0.87 -1.3 466,924 + MPMX19_04153 0.87 +0.3 466,924 + MPMX19_04153 0.87 +1.5 466,924 + MPMX19_04153 0.87 -2.3 466,924 + MPMX19_04153 0.87 +0.0 466,924 + MPMX19_04153 0.87 -0.0 466,924 + MPMX19_04153 0.87 +1.2 466,925 - MPMX19_04153 0.87 -1.4 466,925 - MPMX19_04153 0.87 -0.3 466,925 - MPMX19_04153 0.87 +0.2 466,925 - MPMX19_04153 0.87 -0.8 466,925 - MPMX19_04153 0.87 +0.8 466,925 - MPMX19_04153 0.87 +0.3 466,925 - MPMX19_04153 0.87 -0.7 466,925 - MPMX19_04153 0.87 +0.2 466,925 - MPMX19_04153 0.87 -1.3 466,925 - MPMX19_04153 0.87 +0.3 466,925 - MPMX19_04153 0.87 -2.4 466,925 - MPMX19_04153 0.87 -0.1 466,925 - MPMX19_04153 0.87 -1.4 467,044 + -1.1 467,044 + -1.0 467,044 + -0.3 467,045 - -0.5 467,045 - -3.3 467,045 - -2.5 467,095 + +0.2 467,095 + -1.2 467,095 + +0.6 467,095 + +0.3 467,096 - -0.2 467,096 - -0.9 467,244 + -2.6 467,282 - -0.2 467,282 - +0.2 467,286 + +0.8 467,289 + +0.2 467,562 + -1.8 467,596 + -0.2 467,596 + +0.9 467,596 + -0.8 467,596 + -0.4 467,617 - -1.8 467,617 - -1.9 467,650 + +0.6 467,651 - -0.8 467,670 - -0.7 467,716 + -0.7 467,716 + -0.9 467,759 + -0.7 467,759 + +0.2 467,759 + -0.3 467,759 + +0.4 467,759 + -0.8 467,759 + -0.3 467,759 + +1.2 467,759 + -0.3 467,759 + -0.9 467,759 + -2.3 467,759 + -1.3 467,759 + -0.8 467,760 - +0.0 467,760 - -0.4 467,760 - -0.9 467,760 - -2.0 467,760 - -2.1 467,760 - +0.3 467,760 - -0.5 467,760 - -0.7 467,760 - -0.3 467,760 - -0.4 467,760 - -2.6 467,768 + +1.2 467,768 + +0.3 467,787 + +0.1 467,787 + -0.0 467,787 + -3.1 467,787 + +0.2 467,787 + -0.4 467,787 + -0.8 467,787 + -0.5 467,787 + -1.1 467,787 + -0.3 467,788 - +0.3 467,788 - -0.4 467,788 - +0.2 467,788 - +0.1 467,788 - -0.2 467,788 - +0.2 467,788 - +0.2 467,788 - -0.4 467,788 - +0.2 467,788 - +1.2 467,798 + +0.0 467,798 + +1.2 467,799 - +0.3 467,799 - +0.8 467,799 - -0.2 467,840 + -1.9 467,873 + MPMX19_04154 0.13 +0.5 467,873 + MPMX19_04154 0.13 -0.2 467,873 + MPMX19_04154 0.13 -1.5 467,874 - MPMX19_04154 0.14 +0.5 467,874 - MPMX19_04154 0.14 -0.0 467,874 - MPMX19_04154 0.14 +0.6 467,874 - MPMX19_04154 0.14 -0.4 468,143 + MPMX19_04154 0.46 +0.3 468,143 + MPMX19_04154 0.46 +1.4 468,143 + MPMX19_04154 0.46 +0.5 468,143 + MPMX19_04154 0.46 +0.6 468,143 + MPMX19_04154 0.46 -1.5 468,144 - MPMX19_04154 0.47 -1.5 468,150 + MPMX19_04154 0.47 -1.1 468,150 + MPMX19_04154 0.47 -0.6 468,150 + MPMX19_04154 0.47 -0.0 468,151 - MPMX19_04154 0.47 +0.2 469,554 + MPMX19_04155 0.36 +0.1 469,554 + MPMX19_04155 0.36 +0.2 469,554 + MPMX19_04155 0.36 -2.2 469,555 - MPMX19_04155 0.36 +0.4 469,555 - MPMX19_04155 0.36 -0.7 469,555 - MPMX19_04155 0.36 -0.5 469,555 - MPMX19_04155 0.36 -0.2 469,555 - MPMX19_04155 0.36 +0.9 469,555 - MPMX19_04155 0.36 -0.8 469,555 - MPMX19_04155 0.36 -0.8
Or see this region's nucleotide sequence