Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04136

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04135 and MPMX19_04136 overlap by 8 nucleotidesMPMX19_04136 and MPMX19_04137 are separated by 67 nucleotides MPMX19_04135: MPMX19_04135 - hypothetical protein, at 446,430 to 448,097 _04135 MPMX19_04136: MPMX19_04136 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 448,090 to 449,142 _04136 MPMX19_04137: MPMX19_04137 - HTH-type transcriptional regulator PgrR, at 449,210 to 450,094 _04137 Position (kb) 448 449 450Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 447.123 kb on + strand, within MPMX19_04135at 447.123 kb on + strand, within MPMX19_04135at 447.123 kb on + strand, within MPMX19_04135at 447.123 kb on + strand, within MPMX19_04135at 447.124 kb on - strand, within MPMX19_04135at 447.124 kb on - strand, within MPMX19_04135at 447.124 kb on - strand, within MPMX19_04135at 447.124 kb on - strand, within MPMX19_04135at 447.124 kb on - strand, within MPMX19_04135at 447.124 kb on - strand, within MPMX19_04135at 447.124 kb on - strand, within MPMX19_04135at 447.124 kb on - strand, within MPMX19_04135at 447.129 kb on + strand, within MPMX19_04135at 447.129 kb on + strand, within MPMX19_04135at 447.129 kb on + strand, within MPMX19_04135at 447.129 kb on + strand, within MPMX19_04135at 447.129 kb on + strand, within MPMX19_04135at 447.129 kb on + strand, within MPMX19_04135at 447.129 kb on + strand, within MPMX19_04135at 447.129 kb on + strand, within MPMX19_04135at 447.129 kb on + strand, within MPMX19_04135at 447.129 kb on + strand, within MPMX19_04135at 447.129 kb on + strand, within MPMX19_04135at 447.130 kb on - strand, within MPMX19_04135at 447.130 kb on - strand, within MPMX19_04135at 447.130 kb on - strand, within MPMX19_04135at 447.130 kb on - strand, within MPMX19_04135at 447.130 kb on - strand, within MPMX19_04135at 447.130 kb on - strand, within MPMX19_04135at 447.130 kb on - strand, within MPMX19_04135at 447.130 kb on - strand, within MPMX19_04135at 447.130 kb on - strand, within MPMX19_04135at 447.162 kb on + strand, within MPMX19_04135at 447.162 kb on + strand, within MPMX19_04135at 447.162 kb on + strand, within MPMX19_04135at 447.162 kb on + strand, within MPMX19_04135at 447.162 kb on + strand, within MPMX19_04135at 447.163 kb on - strand, within MPMX19_04135at 447.163 kb on - strand, within MPMX19_04135at 447.163 kb on - strand, within MPMX19_04135at 447.163 kb on - strand, within MPMX19_04135at 447.163 kb on - strand, within MPMX19_04135at 447.163 kb on - strand, within MPMX19_04135at 447.255 kb on + strand, within MPMX19_04135at 447.255 kb on + strand, within MPMX19_04135at 447.256 kb on - strand, within MPMX19_04135at 447.256 kb on - strand, within MPMX19_04135at 447.256 kb on - strand, within MPMX19_04135at 447.256 kb on - strand, within MPMX19_04135at 447.543 kb on + strand, within MPMX19_04135at 447.544 kb on - strand, within MPMX19_04135at 447.544 kb on - strand, within MPMX19_04135at 447.544 kb on - strand, within MPMX19_04135at 447.603 kb on + strand, within MPMX19_04135at 447.603 kb on + strand, within MPMX19_04135at 447.603 kb on + strand, within MPMX19_04135at 447.603 kb on + strand, within MPMX19_04135at 447.603 kb on + strand, within MPMX19_04135at 447.604 kb on - strand, within MPMX19_04135at 447.604 kb on - strand, within MPMX19_04135at 447.604 kb on - strand, within MPMX19_04135at 447.604 kb on - strand, within MPMX19_04135at 447.604 kb on - strand, within MPMX19_04135at 447.604 kb on - strand, within MPMX19_04135at 447.604 kb on - strand, within MPMX19_04135at 447.604 kb on - strand, within MPMX19_04135at 447.604 kb on - strand, within MPMX19_04135at 447.604 kb on - strand, within MPMX19_04135at 447.604 kb on - strand, within MPMX19_04135at 447.726 kb on + strand, within MPMX19_04135at 447.726 kb on + strand, within MPMX19_04135at 447.726 kb on + strand, within MPMX19_04135at 447.727 kb on - strand, within MPMX19_04135at 447.727 kb on - strand, within MPMX19_04135at 447.727 kb on - strand, within MPMX19_04135at 447.727 kb on - strand, within MPMX19_04135at 447.727 kb on - strand, within MPMX19_04135at 447.747 kb on + strand, within MPMX19_04135at 447.748 kb on - strand, within MPMX19_04135at 447.921 kb on + strand, within MPMX19_04135at 447.921 kb on + strand, within MPMX19_04135at 447.936 kb on + strandat 447.936 kb on + strandat 447.936 kb on + strandat 447.937 kb on - strandat 447.937 kb on - strandat 447.937 kb on - strandat 447.937 kb on - strandat 447.937 kb on - strandat 448.095 kb on + strandat 448.095 kb on + strandat 448.095 kb on + strandat 448.095 kb on + strandat 448.095 kb on + strandat 448.095 kb on + strandat 448.096 kb on - strandat 448.096 kb on - strandat 448.096 kb on - strandat 448.126 kb on + strandat 448.126 kb on + strandat 448.127 kb on - strandat 448.357 kb on + strand, within MPMX19_04136at 448.357 kb on + strand, within MPMX19_04136at 448.357 kb on + strand, within MPMX19_04136at 448.357 kb on + strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.358 kb on - strand, within MPMX19_04136at 448.399 kb on + strand, within MPMX19_04136at 448.399 kb on + strand, within MPMX19_04136at 448.399 kb on + strand, within MPMX19_04136at 448.400 kb on - strand, within MPMX19_04136at 448.400 kb on - strand, within MPMX19_04136at 448.555 kb on + strand, within MPMX19_04136at 448.555 kb on + strand, within MPMX19_04136at 448.555 kb on + strand, within MPMX19_04136at 448.740 kb on + strand, within MPMX19_04136at 448.741 kb on - strand, within MPMX19_04136at 448.771 kb on + strand, within MPMX19_04136at 448.771 kb on + strand, within MPMX19_04136at 448.771 kb on + strand, within MPMX19_04136at 448.771 kb on + strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 448.772 kb on - strand, within MPMX19_04136at 449.017 kb on + strand, within MPMX19_04136at 449.017 kb on + strand, within MPMX19_04136at 449.018 kb on - strand, within MPMX19_04136at 449.018 kb on - strand, within MPMX19_04136at 449.018 kb on - strand, within MPMX19_04136at 449.271 kb on + strandat 449.271 kb on + strandat 449.271 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.274 kb on + strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.275 kb on - strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.280 kb on + strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.281 kb on - strandat 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.370 kb on + strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.371 kb on - strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.487 kb on + strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.488 kb on - strand, within MPMX19_04137at 449.505 kb on + strand, within MPMX19_04137at 449.506 kb on - strand, within MPMX19_04137at 449.506 kb on - strand, within MPMX19_04137at 449.506 kb on - strand, within MPMX19_04137at 449.812 kb on + strand, within MPMX19_04137at 450.095 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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447,123 + MPMX19_04135 0.42 +0.6
447,123 + MPMX19_04135 0.42 -0.2
447,123 + MPMX19_04135 0.42 +0.3
447,123 + MPMX19_04135 0.42 +0.6
447,124 - MPMX19_04135 0.42 +0.1
447,124 - MPMX19_04135 0.42 +0.1
447,124 - MPMX19_04135 0.42 +0.8
447,124 - MPMX19_04135 0.42 -0.7
447,124 - MPMX19_04135 0.42 +0.1
447,124 - MPMX19_04135 0.42 -0.8
447,124 - MPMX19_04135 0.42 +0.7
447,124 - MPMX19_04135 0.42 +0.3
447,129 + MPMX19_04135 0.42 -0.2
447,129 + MPMX19_04135 0.42 -0.0
447,129 + MPMX19_04135 0.42 -0.8
447,129 + MPMX19_04135 0.42 -1.0
447,129 + MPMX19_04135 0.42 -0.7
447,129 + MPMX19_04135 0.42 -0.2
447,129 + MPMX19_04135 0.42 +0.2
447,129 + MPMX19_04135 0.42 +0.8
447,129 + MPMX19_04135 0.42 -1.2
447,129 + MPMX19_04135 0.42 +1.2
447,129 + MPMX19_04135 0.42 -0.2
447,130 - MPMX19_04135 0.42 -0.2
447,130 - MPMX19_04135 0.42 -0.0
447,130 - MPMX19_04135 0.42 +0.8
447,130 - MPMX19_04135 0.42 -0.7
447,130 - MPMX19_04135 0.42 -0.5
447,130 - MPMX19_04135 0.42 -0.5
447,130 - MPMX19_04135 0.42 +1.2
447,130 - MPMX19_04135 0.42 +0.4
447,130 - MPMX19_04135 0.42 +0.6
447,162 + MPMX19_04135 0.44 -0.9
447,162 + MPMX19_04135 0.44 -1.5
447,162 + MPMX19_04135 0.44 +0.5
447,162 + MPMX19_04135 0.44 +0.4
447,162 + MPMX19_04135 0.44 +0.8
447,163 - MPMX19_04135 0.44 +1.0
447,163 - MPMX19_04135 0.44 -0.2
447,163 - MPMX19_04135 0.44 -0.7
447,163 - MPMX19_04135 0.44 -0.9
447,163 - MPMX19_04135 0.44 -2.2
447,163 - MPMX19_04135 0.44 -0.5
447,255 + MPMX19_04135 0.49 -0.9
447,255 + MPMX19_04135 0.49 +0.2
447,256 - MPMX19_04135 0.50 -0.5
447,256 - MPMX19_04135 0.50 +1.2
447,256 - MPMX19_04135 0.50 +1.2
447,256 - MPMX19_04135 0.50 -0.6
447,543 + MPMX19_04135 0.67 +0.1
447,544 - MPMX19_04135 0.67 -2.1
447,544 - MPMX19_04135 0.67 +0.9
447,544 - MPMX19_04135 0.67 -1.4
447,603 + MPMX19_04135 0.70 -1.3
447,603 + MPMX19_04135 0.70 -1.0
447,603 + MPMX19_04135 0.70 -1.2
447,603 + MPMX19_04135 0.70 -0.4
447,603 + MPMX19_04135 0.70 -1.0
447,604 - MPMX19_04135 0.70 +1.2
447,604 - MPMX19_04135 0.70 +0.9
447,604 - MPMX19_04135 0.70 -0.2
447,604 - MPMX19_04135 0.70 +1.2
447,604 - MPMX19_04135 0.70 -0.7
447,604 - MPMX19_04135 0.70 -0.0
447,604 - MPMX19_04135 0.70 -1.2
447,604 - MPMX19_04135 0.70 -0.4
447,604 - MPMX19_04135 0.70 +0.1
447,604 - MPMX19_04135 0.70 -1.0
447,604 - MPMX19_04135 0.70 -1.0
447,726 + MPMX19_04135 0.78 +0.2
447,726 + MPMX19_04135 0.78 -2.3
447,726 + MPMX19_04135 0.78 +0.2
447,727 - MPMX19_04135 0.78 -0.7
447,727 - MPMX19_04135 0.78 -0.7
447,727 - MPMX19_04135 0.78 -0.0
447,727 - MPMX19_04135 0.78 +0.6
447,727 - MPMX19_04135 0.78 +0.6
447,747 + MPMX19_04135 0.79 +0.6
447,748 - MPMX19_04135 0.79 -2.4
447,921 + MPMX19_04135 0.89 -0.4
447,921 + MPMX19_04135 0.89 -0.8
447,936 + +0.5
447,936 + -0.8
447,936 + +1.3
447,937 - -0.2
447,937 - +0.4
447,937 - -1.4
447,937 - -0.4
447,937 - -0.7
448,095 + +0.3
448,095 + +0.0
448,095 + -1.4
448,095 + -1.0
448,095 + -0.3
448,095 + +0.2
448,096 - -1.7
448,096 - +0.4
448,096 - -0.3
448,126 + +1.6
448,126 + -0.4
448,127 - -0.8
448,357 + MPMX19_04136 0.25 -0.8
448,357 + MPMX19_04136 0.25 -0.3
448,357 + MPMX19_04136 0.25 +0.5
448,357 + MPMX19_04136 0.25 -1.3
448,358 - MPMX19_04136 0.25 +0.5
448,358 - MPMX19_04136 0.25 -0.2
448,358 - MPMX19_04136 0.25 -2.0
448,358 - MPMX19_04136 0.25 -0.0
448,358 - MPMX19_04136 0.25 -0.1
448,358 - MPMX19_04136 0.25 -0.4
448,399 + MPMX19_04136 0.29 +0.4
448,399 + MPMX19_04136 0.29 +1.5
448,399 + MPMX19_04136 0.29 -1.2
448,400 - MPMX19_04136 0.29 +0.6
448,400 - MPMX19_04136 0.29 -0.2
448,555 + MPMX19_04136 0.44 +1.4
448,555 + MPMX19_04136 0.44 -1.1
448,555 + MPMX19_04136 0.44 -0.7
448,740 + MPMX19_04136 0.62 +1.0
448,741 - MPMX19_04136 0.62 -1.2
448,771 + MPMX19_04136 0.65 -0.8
448,771 + MPMX19_04136 0.65 +0.2
448,771 + MPMX19_04136 0.65 -0.2
448,771 + MPMX19_04136 0.65 -0.0
448,772 - MPMX19_04136 0.65 -1.2
448,772 - MPMX19_04136 0.65 -0.0
448,772 - MPMX19_04136 0.65 +0.6
448,772 - MPMX19_04136 0.65 +0.0
448,772 - MPMX19_04136 0.65 +0.4
448,772 - MPMX19_04136 0.65 -2.2
448,772 - MPMX19_04136 0.65 -0.0
448,772 - MPMX19_04136 0.65 +1.7
448,772 - MPMX19_04136 0.65 -1.1
448,772 - MPMX19_04136 0.65 +1.6
449,017 + MPMX19_04136 0.88 -0.4
449,017 + MPMX19_04136 0.88 -0.5
449,018 - MPMX19_04136 0.88 +0.6
449,018 - MPMX19_04136 0.88 -0.8
449,018 - MPMX19_04136 0.88 +1.2
449,271 + -0.4
449,271 + +1.2
449,271 + -0.7
449,274 + -2.4
449,274 + -1.9
449,274 + -0.4
449,274 + +1.0
449,274 + +0.8
449,274 + -1.2
449,274 + +0.6
449,274 + -1.2
449,274 + -1.8
449,274 + -0.8
449,274 + +2.7
449,274 + -0.5
449,274 + +0.2
449,274 + -1.3
449,275 - +0.2
449,275 - -0.8
449,275 - +1.9
449,275 - -0.3
449,275 - -0.8
449,275 - -2.6
449,275 - +0.9
449,275 - +0.3
449,275 - +0.0
449,275 - +0.3
449,275 - +0.3
449,275 - -0.3
449,275 - +1.2
449,275 - +0.7
449,275 - -0.5
449,275 - +0.8
449,280 + -0.5
449,280 + -2.8
449,280 + -0.0
449,280 + +1.2
449,280 + -1.0
449,281 - -0.3
449,281 - +0.2
449,281 - +0.3
449,281 - -0.7
449,281 - -0.4
449,370 + MPMX19_04137 0.18 -0.8
449,370 + MPMX19_04137 0.18 -1.0
449,370 + MPMX19_04137 0.18 -1.2
449,370 + MPMX19_04137 0.18 -1.0
449,370 + MPMX19_04137 0.18 -0.1
449,370 + MPMX19_04137 0.18 -0.0
449,370 + MPMX19_04137 0.18 -0.3
449,370 + MPMX19_04137 0.18 +0.2
449,370 + MPMX19_04137 0.18 -2.0
449,370 + MPMX19_04137 0.18 +0.3
449,370 + MPMX19_04137 0.18 -1.4
449,370 + MPMX19_04137 0.18 -0.2
449,370 + MPMX19_04137 0.18 -0.2
449,370 + MPMX19_04137 0.18 -0.0
449,370 + MPMX19_04137 0.18 -0.0
449,370 + MPMX19_04137 0.18 -0.8
449,370 + MPMX19_04137 0.18 -1.2
449,370 + MPMX19_04137 0.18 +0.3
449,371 - MPMX19_04137 0.18 +0.8
449,371 - MPMX19_04137 0.18 +0.8
449,371 - MPMX19_04137 0.18 -0.7
449,371 - MPMX19_04137 0.18 -1.4
449,371 - MPMX19_04137 0.18 -0.2
449,371 - MPMX19_04137 0.18 +0.4
449,371 - MPMX19_04137 0.18 -1.3
449,371 - MPMX19_04137 0.18 -0.7
449,371 - MPMX19_04137 0.18 -1.0
449,371 - MPMX19_04137 0.18 -0.3
449,371 - MPMX19_04137 0.18 +0.3
449,371 - MPMX19_04137 0.18 -1.4
449,487 + MPMX19_04137 0.31 -0.4
449,487 + MPMX19_04137 0.31 -0.7
449,487 + MPMX19_04137 0.31 -2.4
449,487 + MPMX19_04137 0.31 +0.3
449,487 + MPMX19_04137 0.31 -0.7
449,488 - MPMX19_04137 0.31 -1.5
449,488 - MPMX19_04137 0.31 +0.4
449,488 - MPMX19_04137 0.31 +0.3
449,488 - MPMX19_04137 0.31 -0.8
449,488 - MPMX19_04137 0.31 -0.8
449,488 - MPMX19_04137 0.31 -0.2
449,505 + MPMX19_04137 0.33 +0.6
449,506 - MPMX19_04137 0.33 +0.7
449,506 - MPMX19_04137 0.33 +0.4
449,506 - MPMX19_04137 0.33 +1.0
449,812 + MPMX19_04137 0.68 +2.7
450,095 + -1.3

Or see this region's nucleotide sequence