Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04109

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04107 and MPMX19_04108 overlap by 4 nucleotidesMPMX19_04108 and MPMX19_04109 are separated by 10 nucleotidesMPMX19_04109 and MPMX19_04110 are separated by 72 nucleotidesMPMX19_04110 and MPMX19_04111 are separated by 271 nucleotides MPMX19_04107: MPMX19_04107 - Sensor histidine kinase RcsC, at 412,256 to 415,762 _04107 MPMX19_04108: MPMX19_04108 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 415,759 to 416,670 _04108 MPMX19_04109: MPMX19_04109 - hypothetical protein, at 416,681 to 417,502 _04109 MPMX19_04110: MPMX19_04110 - Bifunctional protein PaaZ, at 417,575 to 418,042 _04110 MPMX19_04111: MPMX19_04111 - hypothetical protein, at 418,314 to 418,877 _04111 Position (kb) 416 417 418Strain fitness (log2 ratio) -2 -1 0 1 2at 416.068 kb on + strand, within MPMX19_04108at 416.068 kb on + strand, within MPMX19_04108at 416.068 kb on + strand, within MPMX19_04108at 416.068 kb on + strand, within MPMX19_04108at 416.068 kb on + strand, within MPMX19_04108at 416.068 kb on + strand, within MPMX19_04108at 416.068 kb on + strand, within MPMX19_04108at 416.068 kb on + strand, within MPMX19_04108at 416.068 kb on + strand, within MPMX19_04108at 416.068 kb on + strand, within MPMX19_04108at 416.068 kb on + strand, within MPMX19_04108at 416.069 kb on - strand, within MPMX19_04108at 416.069 kb on - strand, within MPMX19_04108at 416.069 kb on - strand, within MPMX19_04108at 416.069 kb on - strand, within MPMX19_04108at 416.069 kb on - strand, within MPMX19_04108at 416.069 kb on - strand, within MPMX19_04108at 416.069 kb on - strand, within MPMX19_04108at 416.069 kb on - strand, within MPMX19_04108at 416.069 kb on - strand, within MPMX19_04108at 416.069 kb on - strand, within MPMX19_04108at 416.143 kb on + strand, within MPMX19_04108at 416.143 kb on + strand, within MPMX19_04108at 416.144 kb on - strand, within MPMX19_04108at 416.144 kb on - strand, within MPMX19_04108at 416.144 kb on - strand, within MPMX19_04108at 416.144 kb on - strand, within MPMX19_04108at 416.386 kb on + strand, within MPMX19_04108at 416.386 kb on + strand, within MPMX19_04108at 416.386 kb on + strand, within MPMX19_04108at 416.386 kb on + strand, within MPMX19_04108at 416.386 kb on + strand, within MPMX19_04108at 416.386 kb on + strand, within MPMX19_04108at 416.386 kb on + strand, within MPMX19_04108at 416.386 kb on + strand, within MPMX19_04108at 416.386 kb on + strand, within MPMX19_04108at 416.386 kb on + strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.387 kb on - strand, within MPMX19_04108at 416.413 kb on + strand, within MPMX19_04108at 416.413 kb on + strand, within MPMX19_04108at 416.413 kb on + strand, within MPMX19_04108at 416.413 kb on + strand, within MPMX19_04108at 416.413 kb on + strand, within MPMX19_04108at 416.413 kb on + strand, within MPMX19_04108at 416.413 kb on + strand, within MPMX19_04108at 416.413 kb on + strand, within MPMX19_04108at 416.413 kb on + strand, within MPMX19_04108at 416.413 kb on + strand, within MPMX19_04108at 416.413 kb on + strand, within MPMX19_04108at 416.414 kb on - strand, within MPMX19_04108at 416.414 kb on - strand, within MPMX19_04108at 416.414 kb on - strand, within MPMX19_04108at 416.414 kb on - strand, within MPMX19_04108at 416.414 kb on - strand, within MPMX19_04108at 416.414 kb on - strand, within MPMX19_04108at 416.414 kb on - strand, within MPMX19_04108at 416.414 kb on - strand, within MPMX19_04108at 416.414 kb on - strand, within MPMX19_04108at 416.414 kb on - strand, within MPMX19_04108at 416.414 kb on - strand, within MPMX19_04108at 416.568 kb on + strand, within MPMX19_04108at 416.568 kb on + strand, within MPMX19_04108at 416.568 kb on + strand, within MPMX19_04108at 416.742 kb on + strandat 416.742 kb on + strandat 416.742 kb on + strandat 416.743 kb on - strandat 416.743 kb on - strandat 416.799 kb on + strand, within MPMX19_04109at 416.800 kb on - strand, within MPMX19_04109at 416.817 kb on + strand, within MPMX19_04109at 416.817 kb on + strand, within MPMX19_04109at 416.817 kb on + strand, within MPMX19_04109at 416.817 kb on + strand, within MPMX19_04109at 416.818 kb on - strand, within MPMX19_04109at 416.818 kb on - strand, within MPMX19_04109at 416.818 kb on - strand, within MPMX19_04109at 416.818 kb on - strand, within MPMX19_04109at 416.818 kb on - strand, within MPMX19_04109at 416.896 kb on - strand, within MPMX19_04109at 417.130 kb on - strand, within MPMX19_04109at 417.130 kb on - strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.237 kb on + strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.238 kb on - strand, within MPMX19_04109at 417.361 kb on + strand, within MPMX19_04109at 417.445 kb on + strandat 417.446 kb on - strandat 417.538 kb on + strandat 417.538 kb on + strandat 417.538 kb on + strandat 417.538 kb on + strandat 417.539 kb on - strandat 417.539 kb on - strandat 417.539 kb on - strandat 417.539 kb on - strandat 417.539 kb on - strandat 417.539 kb on - strandat 417.672 kb on + strand, within MPMX19_04110at 417.672 kb on + strand, within MPMX19_04110at 417.672 kb on + strand, within MPMX19_04110at 417.672 kb on + strand, within MPMX19_04110at 417.672 kb on + strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 417.673 kb on - strand, within MPMX19_04110at 418.132 kb on + strandat 418.132 kb on + strandat 418.133 kb on - strandat 418.133 kb on - strandat 418.209 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strandat 418.295 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
416,068 + MPMX19_04108 0.34 -0.4
416,068 + MPMX19_04108 0.34 -0.3
416,068 + MPMX19_04108 0.34 +0.7
416,068 + MPMX19_04108 0.34 +1.2
416,068 + MPMX19_04108 0.34 -2.2
416,068 + MPMX19_04108 0.34 -0.6
416,068 + MPMX19_04108 0.34 -1.6
416,068 + MPMX19_04108 0.34 +0.9
416,068 + MPMX19_04108 0.34 +1.5
416,068 + MPMX19_04108 0.34 -1.0
416,068 + MPMX19_04108 0.34 -0.1
416,069 - MPMX19_04108 0.34 +0.7
416,069 - MPMX19_04108 0.34 +1.2
416,069 - MPMX19_04108 0.34 +0.6
416,069 - MPMX19_04108 0.34 +1.6
416,069 - MPMX19_04108 0.34 -0.7
416,069 - MPMX19_04108 0.34 -0.7
416,069 - MPMX19_04108 0.34 -2.1
416,069 - MPMX19_04108 0.34 -0.7
416,069 - MPMX19_04108 0.34 +0.7
416,069 - MPMX19_04108 0.34 -1.0
416,143 + MPMX19_04108 0.42 -1.0
416,143 + MPMX19_04108 0.42 -1.8
416,144 - MPMX19_04108 0.42 -0.8
416,144 - MPMX19_04108 0.42 -0.7
416,144 - MPMX19_04108 0.42 -0.9
416,144 - MPMX19_04108 0.42 +0.6
416,386 + MPMX19_04108 0.69 +0.2
416,386 + MPMX19_04108 0.69 +0.3
416,386 + MPMX19_04108 0.69 -0.2
416,386 + MPMX19_04108 0.69 +1.4
416,386 + MPMX19_04108 0.69 -1.8
416,386 + MPMX19_04108 0.69 -0.7
416,386 + MPMX19_04108 0.69 +0.6
416,386 + MPMX19_04108 0.69 -0.9
416,386 + MPMX19_04108 0.69 -0.2
416,386 + MPMX19_04108 0.69 +0.7
416,387 - MPMX19_04108 0.69 -0.8
416,387 - MPMX19_04108 0.69 +0.6
416,387 - MPMX19_04108 0.69 -0.0
416,387 - MPMX19_04108 0.69 +0.6
416,387 - MPMX19_04108 0.69 -2.2
416,387 - MPMX19_04108 0.69 -1.4
416,387 - MPMX19_04108 0.69 -0.0
416,387 - MPMX19_04108 0.69 -0.5
416,387 - MPMX19_04108 0.69 +0.4
416,387 - MPMX19_04108 0.69 +1.2
416,387 - MPMX19_04108 0.69 -1.0
416,387 - MPMX19_04108 0.69 -0.2
416,387 - MPMX19_04108 0.69 -1.8
416,387 - MPMX19_04108 0.69 +0.8
416,413 + MPMX19_04108 0.72 +0.5
416,413 + MPMX19_04108 0.72 -0.2
416,413 + MPMX19_04108 0.72 +0.8
416,413 + MPMX19_04108 0.72 -2.0
416,413 + MPMX19_04108 0.72 -0.8
416,413 + MPMX19_04108 0.72 +0.2
416,413 + MPMX19_04108 0.72 -0.8
416,413 + MPMX19_04108 0.72 -0.4
416,413 + MPMX19_04108 0.72 -0.7
416,413 + MPMX19_04108 0.72 +0.8
416,413 + MPMX19_04108 0.72 -1.5
416,414 - MPMX19_04108 0.72 +0.3
416,414 - MPMX19_04108 0.72 -1.5
416,414 - MPMX19_04108 0.72 -1.0
416,414 - MPMX19_04108 0.72 +0.3
416,414 - MPMX19_04108 0.72 +1.2
416,414 - MPMX19_04108 0.72 +0.9
416,414 - MPMX19_04108 0.72 -1.2
416,414 - MPMX19_04108 0.72 +1.7
416,414 - MPMX19_04108 0.72 -1.3
416,414 - MPMX19_04108 0.72 -0.7
416,414 - MPMX19_04108 0.72 -0.1
416,568 + MPMX19_04108 0.89 -1.0
416,568 + MPMX19_04108 0.89 +0.6
416,568 + MPMX19_04108 0.89 -0.1
416,742 + -0.4
416,742 + -0.4
416,742 + -1.1
416,743 - +0.2
416,743 - +0.6
416,799 + MPMX19_04109 0.14 -0.8
416,800 - MPMX19_04109 0.14 -0.0
416,817 + MPMX19_04109 0.17 +0.9
416,817 + MPMX19_04109 0.17 +0.4
416,817 + MPMX19_04109 0.17 +0.8
416,817 + MPMX19_04109 0.17 -0.2
416,818 - MPMX19_04109 0.17 -0.0
416,818 - MPMX19_04109 0.17 +0.6
416,818 - MPMX19_04109 0.17 -0.6
416,818 - MPMX19_04109 0.17 +0.6
416,818 - MPMX19_04109 0.17 -0.2
416,896 - MPMX19_04109 0.26 -0.3
417,130 - MPMX19_04109 0.55 -1.4
417,130 - MPMX19_04109 0.55 -2.1
417,237 + MPMX19_04109 0.68 -1.4
417,237 + MPMX19_04109 0.68 -2.3
417,237 + MPMX19_04109 0.68 -0.4
417,237 + MPMX19_04109 0.68 -1.4
417,237 + MPMX19_04109 0.68 +0.5
417,237 + MPMX19_04109 0.68 -0.7
417,237 + MPMX19_04109 0.68 +0.2
417,237 + MPMX19_04109 0.68 -0.3
417,237 + MPMX19_04109 0.68 +0.4
417,237 + MPMX19_04109 0.68 +1.2
417,237 + MPMX19_04109 0.68 -0.1
417,237 + MPMX19_04109 0.68 +0.1
417,237 + MPMX19_04109 0.68 -0.7
417,237 + MPMX19_04109 0.68 +1.2
417,238 - MPMX19_04109 0.68 -0.7
417,238 - MPMX19_04109 0.68 +0.6
417,238 - MPMX19_04109 0.68 -0.2
417,238 - MPMX19_04109 0.68 +0.2
417,238 - MPMX19_04109 0.68 -0.2
417,238 - MPMX19_04109 0.68 -0.1
417,238 - MPMX19_04109 0.68 -1.1
417,238 - MPMX19_04109 0.68 -0.7
417,238 - MPMX19_04109 0.68 +1.8
417,361 + MPMX19_04109 0.83 -0.4
417,445 + -0.6
417,446 - -1.3
417,538 + +0.3
417,538 + -0.5
417,538 + +0.2
417,538 + +0.6
417,539 - -0.7
417,539 - +1.6
417,539 - -0.4
417,539 - +0.6
417,539 - -0.2
417,539 - -0.2
417,672 + MPMX19_04110 0.21 -0.7
417,672 + MPMX19_04110 0.21 -0.4
417,672 + MPMX19_04110 0.21 +1.0
417,672 + MPMX19_04110 0.21 +0.8
417,672 + MPMX19_04110 0.21 -0.3
417,673 - MPMX19_04110 0.21 -0.8
417,673 - MPMX19_04110 0.21 -1.4
417,673 - MPMX19_04110 0.21 +0.6
417,673 - MPMX19_04110 0.21 -1.2
417,673 - MPMX19_04110 0.21 -0.6
417,673 - MPMX19_04110 0.21 +0.6
417,673 - MPMX19_04110 0.21 +1.0
417,673 - MPMX19_04110 0.21 +0.8
417,673 - MPMX19_04110 0.21 +0.1
418,132 + -0.4
418,132 + +0.3
418,133 - +0.3
418,133 - -0.5
418,209 + -0.8
418,295 + -1.5
418,295 + -0.5
418,295 + +0.3
418,295 + +0.3
418,295 + -0.5
418,295 + -2.1
418,295 + -0.7
418,295 + +0.3
418,295 + -0.7
418,295 + -0.0
418,295 + +0.3
418,295 + -1.1
418,295 + -0.1

Or see this region's nucleotide sequence