Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04080 and MPMX19_04081 are separated by 12 nucleotides MPMX19_04081 and MPMX19_04082 are separated by 24 nucleotides MPMX19_04082 and MPMX19_04083 overlap by 4 nucleotides MPMX19_04083 and MPMX19_04084 are separated by 10 nucleotides MPMX19_04084 and MPMX19_04085 are separated by 167 nucleotides MPMX19_04085 and MPMX19_04086 overlap by 4 nucleotides
MPMX19_04080: MPMX19_04080 - hypothetical protein, at 385,999 to 386,433
_04080
MPMX19_04081: MPMX19_04081 - hypothetical protein, at 386,446 to 386,577
_04081
MPMX19_04082: MPMX19_04082 - hypothetical protein, at 386,602 to 387,138
_04082
MPMX19_04083: MPMX19_04083 - Cytochrome c-type protein SHP, at 387,135 to 387,581
_04083
MPMX19_04084: MPMX19_04084 - hypothetical protein, at 387,592 to 388,041
_04084
MPMX19_04085: MPMX19_04085 - hypothetical protein, at 388,209 to 388,562
_04085
MPMX19_04086: MPMX19_04086 - hypothetical protein, at 388,559 to 390,463
_04086
Position (kb) 387
388 Strain fitness (log2 ratio) -2
-1
0
1 at 386.512 kb on + strand, within MPMX19_04081 at 386.512 kb on + strand, within MPMX19_04081 at 386.512 kb on + strand, within MPMX19_04081 at 386.513 kb on - strand, within MPMX19_04081 at 386.513 kb on - strand, within MPMX19_04081 at 386.583 kb on + strand at 386.583 kb on + strand at 386.583 kb on + strand at 386.584 kb on - strand at 386.584 kb on - strand at 386.584 kb on - strand at 386.686 kb on + strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.687 kb on - strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.710 kb on + strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.711 kb on - strand, within MPMX19_04082 at 386.734 kb on + strand, within MPMX19_04082 at 386.735 kb on - strand, within MPMX19_04082 at 386.735 kb on - strand, within MPMX19_04082 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.321 kb on + strand, within MPMX19_04083 at 387.322 kb on - strand, within MPMX19_04083 at 387.322 kb on - strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.411 kb on + strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.412 kb on - strand, within MPMX19_04083 at 387.560 kb on + strand at 387.560 kb on + strand at 387.560 kb on + strand at 387.561 kb on - strand at 387.561 kb on - strand at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.862 kb on + strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 387.863 kb on - strand, within MPMX19_04084 at 388.027 kb on + strand at 388.027 kb on + strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.028 kb on - strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.054 kb on + strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.055 kb on - strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.066 kb on + strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.067 kb on - strand at 388.162 kb on + strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.163 kb on - strand at 388.184 kb on + strand at 388.184 kb on + strand at 388.184 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.193 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.196 kb on + strand at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.411 kb on + strand, within MPMX19_04085 at 388.412 kb on - strand, within MPMX19_04085 at 388.412 kb on - strand, within MPMX19_04085
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 386,512 + MPMX19_04081 0.50 -1.1 386,512 + MPMX19_04081 0.50 -0.3 386,512 + MPMX19_04081 0.50 -0.9 386,513 - MPMX19_04081 0.51 -0.9 386,513 - MPMX19_04081 0.51 -0.2 386,583 + -0.8 386,583 + -0.5 386,583 + -1.4 386,584 - +0.8 386,584 - -0.6 386,584 - +0.4 386,686 + MPMX19_04082 0.16 -1.6 386,687 - MPMX19_04082 0.16 +1.1 386,687 - MPMX19_04082 0.16 +0.9 386,687 - MPMX19_04082 0.16 +1.1 386,687 - MPMX19_04082 0.16 +0.2 386,687 - MPMX19_04082 0.16 -1.2 386,687 - MPMX19_04082 0.16 -1.8 386,687 - MPMX19_04082 0.16 +0.7 386,687 - MPMX19_04082 0.16 -0.9 386,687 - MPMX19_04082 0.16 +0.1 386,687 - MPMX19_04082 0.16 +0.6 386,710 + MPMX19_04082 0.20 -0.1 386,710 + MPMX19_04082 0.20 -1.3 386,710 + MPMX19_04082 0.20 -0.7 386,710 + MPMX19_04082 0.20 -0.9 386,710 + MPMX19_04082 0.20 +0.6 386,710 + MPMX19_04082 0.20 +0.6 386,710 + MPMX19_04082 0.20 -0.0 386,711 - MPMX19_04082 0.20 +1.1 386,711 - MPMX19_04082 0.20 -0.4 386,711 - MPMX19_04082 0.20 -2.5 386,711 - MPMX19_04082 0.20 -0.9 386,711 - MPMX19_04082 0.20 +0.7 386,711 - MPMX19_04082 0.20 +1.1 386,711 - MPMX19_04082 0.20 -0.7 386,711 - MPMX19_04082 0.20 +0.1 386,711 - MPMX19_04082 0.20 +0.3 386,711 - MPMX19_04082 0.20 -1.1 386,711 - MPMX19_04082 0.20 +0.1 386,734 + MPMX19_04082 0.25 -0.2 386,735 - MPMX19_04082 0.25 +0.8 386,735 - MPMX19_04082 0.25 -0.7 387,321 + MPMX19_04083 0.42 -1.4 387,321 + MPMX19_04083 0.42 -0.8 387,321 + MPMX19_04083 0.42 -0.3 387,321 + MPMX19_04083 0.42 -1.1 387,321 + MPMX19_04083 0.42 +1.1 387,321 + MPMX19_04083 0.42 +0.8 387,322 - MPMX19_04083 0.42 -1.3 387,322 - MPMX19_04083 0.42 +1.7 387,411 + MPMX19_04083 0.62 -0.1 387,411 + MPMX19_04083 0.62 -1.3 387,411 + MPMX19_04083 0.62 +0.6 387,411 + MPMX19_04083 0.62 -1.2 387,411 + MPMX19_04083 0.62 -0.8 387,411 + MPMX19_04083 0.62 -0.3 387,411 + MPMX19_04083 0.62 -1.0 387,412 - MPMX19_04083 0.62 -2.3 387,412 - MPMX19_04083 0.62 -0.0 387,412 - MPMX19_04083 0.62 -0.2 387,412 - MPMX19_04083 0.62 +0.2 387,412 - MPMX19_04083 0.62 +0.2 387,560 + -2.0 387,560 + +0.3 387,560 + +0.9 387,561 - -0.1 387,561 - +0.8 387,862 + MPMX19_04084 0.60 -1.5 387,862 + MPMX19_04084 0.60 +0.7 387,862 + MPMX19_04084 0.60 -0.0 387,862 + MPMX19_04084 0.60 +0.6 387,862 + MPMX19_04084 0.60 +0.2 387,862 + MPMX19_04084 0.60 -0.7 387,862 + MPMX19_04084 0.60 -1.3 387,862 + MPMX19_04084 0.60 -0.4 387,862 + MPMX19_04084 0.60 -0.5 387,863 - MPMX19_04084 0.60 +0.3 387,863 - MPMX19_04084 0.60 -1.1 387,863 - MPMX19_04084 0.60 -0.4 387,863 - MPMX19_04084 0.60 -1.0 387,863 - MPMX19_04084 0.60 +0.6 387,863 - MPMX19_04084 0.60 -1.5 387,863 - MPMX19_04084 0.60 -0.4 388,027 + -0.9 388,027 + -1.3 388,028 - -0.1 388,028 - -0.6 388,028 - -1.4 388,028 - -0.7 388,028 - -1.7 388,028 - +0.8 388,028 - -0.2 388,028 - +0.5 388,054 + -1.0 388,054 + +0.2 388,054 + +0.2 388,054 + -1.0 388,054 + -1.3 388,054 + -1.8 388,054 + -0.7 388,054 + -0.2 388,055 - +0.2 388,055 - -1.3 388,055 - -0.7 388,055 - -0.4 388,055 - -0.7 388,055 - -0.7 388,055 - +0.0 388,055 - -0.4 388,055 - -1.3 388,055 - -1.8 388,055 - -2.1 388,055 - -2.4 388,055 - -1.0 388,055 - +0.3 388,066 + -0.8 388,066 + +0.3 388,066 + -0.2 388,066 + -0.5 388,066 + -0.2 388,066 + -0.8 388,066 + -0.2 388,066 + +1.7 388,066 + -1.8 388,066 + -0.7 388,067 - -1.4 388,067 - -0.2 388,067 - +0.0 388,067 - -1.9 388,067 - +0.7 388,162 + +0.6 388,163 - -0.1 388,163 - -0.3 388,163 - +0.4 388,163 - +0.6 388,184 + +0.4 388,184 + +0.1 388,184 + -0.4 388,193 + -1.3 388,193 + -0.7 388,193 + -1.0 388,193 + +0.1 388,193 + +0.6 388,193 + +0.3 388,196 + +1.7 388,196 + -0.4 388,196 + -0.9 388,196 + -0.5 388,196 + -0.7 388,196 + +0.2 388,196 + -0.2 388,196 + -0.9 388,196 + -1.0 388,196 + +0.9 388,196 + +0.8 388,196 + +0.8 388,196 + -0.4 388,196 + +1.6 388,196 + +0.6 388,411 + MPMX19_04085 0.57 +0.7 388,411 + MPMX19_04085 0.57 -0.7 388,411 + MPMX19_04085 0.57 -0.0 388,411 + MPMX19_04085 0.57 -0.8 388,411 + MPMX19_04085 0.57 -1.2 388,411 + MPMX19_04085 0.57 -0.7 388,411 + MPMX19_04085 0.57 -0.4 388,412 - MPMX19_04085 0.57 -0.1 388,412 - MPMX19_04085 0.57 +0.6
Or see this region's nucleotide sequence