Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04042

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04041 and MPMX19_04042 are separated by 131 nucleotidesMPMX19_04042 and MPMX19_04043 are separated by 41 nucleotides MPMX19_04041: MPMX19_04041 - 5-deoxy-glucuronate isomerase, at 341,995 to 342,804 _04041 MPMX19_04042: MPMX19_04042 - hypothetical protein, at 342,936 to 343,181 _04042 MPMX19_04043: MPMX19_04043 - Aldehyde-alcohol dehydrogenase, at 343,223 to 345,907 _04043 Position (kb) 342 343 344Strain fitness (log2 ratio) -2 -1 0 1 2at 342.259 kb on + strand, within MPMX19_04041at 342.259 kb on + strand, within MPMX19_04041at 342.259 kb on + strand, within MPMX19_04041at 342.259 kb on + strand, within MPMX19_04041at 342.259 kb on + strand, within MPMX19_04041at 342.260 kb on - strand, within MPMX19_04041at 342.260 kb on - strand, within MPMX19_04041at 342.502 kb on + strand, within MPMX19_04041at 342.502 kb on + strand, within MPMX19_04041at 342.502 kb on + strand, within MPMX19_04041at 342.502 kb on + strand, within MPMX19_04041at 342.502 kb on + strand, within MPMX19_04041at 342.503 kb on - strand, within MPMX19_04041at 342.503 kb on - strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.562 kb on + strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.563 kb on - strand, within MPMX19_04041at 342.565 kb on + strand, within MPMX19_04041at 342.565 kb on + strand, within MPMX19_04041at 342.565 kb on + strand, within MPMX19_04041at 342.565 kb on + strand, within MPMX19_04041at 342.565 kb on + strand, within MPMX19_04041at 342.566 kb on - strand, within MPMX19_04041at 342.566 kb on - strand, within MPMX19_04041at 342.566 kb on - strand, within MPMX19_04041at 342.566 kb on - strand, within MPMX19_04041at 342.566 kb on - strand, within MPMX19_04041at 342.610 kb on + strand, within MPMX19_04041at 342.610 kb on + strand, within MPMX19_04041at 342.610 kb on + strand, within MPMX19_04041at 342.610 kb on + strand, within MPMX19_04041at 342.610 kb on + strand, within MPMX19_04041at 342.611 kb on - strand, within MPMX19_04041at 342.611 kb on - strand, within MPMX19_04041at 342.611 kb on - strand, within MPMX19_04041at 342.611 kb on - strand, within MPMX19_04041at 342.709 kb on + strand, within MPMX19_04041at 342.709 kb on + strand, within MPMX19_04041at 342.709 kb on + strand, within MPMX19_04041at 342.718 kb on + strand, within MPMX19_04041at 342.718 kb on + strand, within MPMX19_04041at 342.718 kb on + strand, within MPMX19_04041at 342.718 kb on + strand, within MPMX19_04041at 342.719 kb on - strand, within MPMX19_04041at 342.719 kb on - strand, within MPMX19_04041at 342.721 kb on + strand, within MPMX19_04041at 342.721 kb on + strand, within MPMX19_04041at 342.721 kb on + strand, within MPMX19_04041at 342.721 kb on + strand, within MPMX19_04041at 342.721 kb on + strand, within MPMX19_04041at 342.722 kb on - strand, within MPMX19_04041at 342.722 kb on - strand, within MPMX19_04041at 342.876 kb on + strandat 342.876 kb on + strandat 342.876 kb on + strandat 342.876 kb on + strandat 342.876 kb on + strandat 342.876 kb on + strandat 342.876 kb on + strandat 342.876 kb on + strandat 342.876 kb on + strandat 342.877 kb on - strandat 342.877 kb on - strandat 342.877 kb on - strandat 342.877 kb on - strandat 342.877 kb on - strandat 343.099 kb on + strand, within MPMX19_04042at 343.099 kb on + strand, within MPMX19_04042at 343.099 kb on + strand, within MPMX19_04042at 343.099 kb on + strand, within MPMX19_04042at 343.099 kb on + strand, within MPMX19_04042at 343.100 kb on - strand, within MPMX19_04042at 343.100 kb on - strand, within MPMX19_04042at 343.100 kb on - strand, within MPMX19_04042at 343.100 kb on - strand, within MPMX19_04042at 343.100 kb on - strand, within MPMX19_04042at 343.100 kb on - strand, within MPMX19_04042at 343.100 kb on - strand, within MPMX19_04042at 343.100 kb on - strand, within MPMX19_04042at 343.100 kb on - strand, within MPMX19_04042at 343.189 kb on + strandat 343.190 kb on - strandat 343.199 kb on + strandat 343.199 kb on + strandat 343.199 kb on + strandat 343.199 kb on + strandat 343.199 kb on + strandat 343.199 kb on + strandat 343.199 kb on + strandat 343.199 kb on + strandat 343.200 kb on - strandat 343.200 kb on - strandat 343.200 kb on - strandat 343.200 kb on - strandat 343.200 kb on - strandat 343.200 kb on - strandat 343.211 kb on + strandat 343.211 kb on + strandat 343.211 kb on + strandat 343.211 kb on + strandat 343.212 kb on - strandat 343.212 kb on - strandat 343.212 kb on - strandat 343.212 kb on - strandat 343.225 kb on - strandat 343.315 kb on - strandat 343.315 kb on - strandat 343.315 kb on - strandat 343.315 kb on - strandat 343.315 kb on - strandat 343.315 kb on - strandat 343.315 kb on - strandat 343.315 kb on - strandat 343.326 kb on + strandat 343.327 kb on - strandat 343.327 kb on - strandat 343.329 kb on + strandat 343.329 kb on + strandat 343.329 kb on + strandat 343.329 kb on + strandat 343.329 kb on + strandat 343.329 kb on + strandat 343.329 kb on + strandat 343.329 kb on + strandat 343.329 kb on + strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.330 kb on - strandat 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043at 343.923 kb on + strand, within MPMX19_04043

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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342,259 + MPMX19_04041 0.33 +0.7
342,259 + MPMX19_04041 0.33 +0.6
342,259 + MPMX19_04041 0.33 +0.3
342,259 + MPMX19_04041 0.33 -0.0
342,259 + MPMX19_04041 0.33 -0.1
342,260 - MPMX19_04041 0.33 +0.4
342,260 - MPMX19_04041 0.33 +0.1
342,502 + MPMX19_04041 0.63 -0.5
342,502 + MPMX19_04041 0.63 +0.5
342,502 + MPMX19_04041 0.63 -0.0
342,502 + MPMX19_04041 0.63 -0.7
342,502 + MPMX19_04041 0.63 -1.5
342,503 - MPMX19_04041 0.63 +0.3
342,503 - MPMX19_04041 0.63 -1.6
342,562 + MPMX19_04041 0.70 -0.6
342,562 + MPMX19_04041 0.70 +1.1
342,562 + MPMX19_04041 0.70 +0.5
342,562 + MPMX19_04041 0.70 +0.9
342,562 + MPMX19_04041 0.70 -1.6
342,562 + MPMX19_04041 0.70 -1.7
342,562 + MPMX19_04041 0.70 -1.5
342,562 + MPMX19_04041 0.70 -0.7
342,562 + MPMX19_04041 0.70 +0.1
342,562 + MPMX19_04041 0.70 +0.1
342,562 + MPMX19_04041 0.70 -0.9
342,562 + MPMX19_04041 0.70 +1.2
342,562 + MPMX19_04041 0.70 -0.1
342,562 + MPMX19_04041 0.70 +0.9
342,562 + MPMX19_04041 0.70 +0.1
342,562 + MPMX19_04041 0.70 +0.4
342,562 + MPMX19_04041 0.70 +1.4
342,562 + MPMX19_04041 0.70 -0.9
342,562 + MPMX19_04041 0.70 -1.2
342,562 + MPMX19_04041 0.70 -0.2
342,562 + MPMX19_04041 0.70 +0.1
342,562 + MPMX19_04041 0.70 -0.7
342,562 + MPMX19_04041 0.70 -0.0
342,562 + MPMX19_04041 0.70 -0.1
342,562 + MPMX19_04041 0.70 -0.9
342,562 + MPMX19_04041 0.70 +1.3
342,562 + MPMX19_04041 0.70 -0.9
342,563 - MPMX19_04041 0.70 -0.2
342,563 - MPMX19_04041 0.70 +0.1
342,563 - MPMX19_04041 0.70 -2.0
342,563 - MPMX19_04041 0.70 -1.7
342,563 - MPMX19_04041 0.70 -0.3
342,563 - MPMX19_04041 0.70 -0.0
342,563 - MPMX19_04041 0.70 +1.1
342,563 - MPMX19_04041 0.70 -0.2
342,563 - MPMX19_04041 0.70 -0.3
342,563 - MPMX19_04041 0.70 -1.1
342,563 - MPMX19_04041 0.70 -0.9
342,563 - MPMX19_04041 0.70 -0.8
342,563 - MPMX19_04041 0.70 +0.1
342,563 - MPMX19_04041 0.70 -1.4
342,563 - MPMX19_04041 0.70 -0.4
342,563 - MPMX19_04041 0.70 -1.2
342,563 - MPMX19_04041 0.70 -2.1
342,563 - MPMX19_04041 0.70 +0.3
342,563 - MPMX19_04041 0.70 +0.1
342,563 - MPMX19_04041 0.70 +0.6
342,563 - MPMX19_04041 0.70 -0.7
342,563 - MPMX19_04041 0.70 -1.3
342,563 - MPMX19_04041 0.70 -1.7
342,563 - MPMX19_04041 0.70 -2.1
342,563 - MPMX19_04041 0.70 +1.5
342,563 - MPMX19_04041 0.70 -0.0
342,563 - MPMX19_04041 0.70 -2.1
342,563 - MPMX19_04041 0.70 -1.3
342,563 - MPMX19_04041 0.70 +0.7
342,565 + MPMX19_04041 0.70 -0.5
342,565 + MPMX19_04041 0.70 +0.1
342,565 + MPMX19_04041 0.70 -1.9
342,565 + MPMX19_04041 0.70 -1.9
342,565 + MPMX19_04041 0.70 -0.0
342,566 - MPMX19_04041 0.70 -0.3
342,566 - MPMX19_04041 0.70 -0.1
342,566 - MPMX19_04041 0.70 -2.6
342,566 - MPMX19_04041 0.70 -1.4
342,566 - MPMX19_04041 0.70 -0.2
342,610 + MPMX19_04041 0.76 -0.6
342,610 + MPMX19_04041 0.76 -0.2
342,610 + MPMX19_04041 0.76 -0.9
342,610 + MPMX19_04041 0.76 -0.1
342,610 + MPMX19_04041 0.76 -0.4
342,611 - MPMX19_04041 0.76 +0.7
342,611 - MPMX19_04041 0.76 -0.7
342,611 - MPMX19_04041 0.76 -0.3
342,611 - MPMX19_04041 0.76 -1.3
342,709 + MPMX19_04041 0.88 -1.5
342,709 + MPMX19_04041 0.88 -1.0
342,709 + MPMX19_04041 0.88 +0.0
342,718 + MPMX19_04041 0.89 -1.2
342,718 + MPMX19_04041 0.89 -0.7
342,718 + MPMX19_04041 0.89 -0.6
342,718 + MPMX19_04041 0.89 -0.5
342,719 - MPMX19_04041 0.89 -0.7
342,719 - MPMX19_04041 0.89 -1.2
342,721 + MPMX19_04041 0.90 -0.6
342,721 + MPMX19_04041 0.90 -1.6
342,721 + MPMX19_04041 0.90 -0.8
342,721 + MPMX19_04041 0.90 -0.3
342,721 + MPMX19_04041 0.90 +0.3
342,722 - MPMX19_04041 0.90 +1.1
342,722 - MPMX19_04041 0.90 -1.7
342,876 + -0.8
342,876 + +2.1
342,876 + +1.1
342,876 + -1.1
342,876 + -0.7
342,876 + -1.2
342,876 + +0.0
342,876 + -0.0
342,876 + +1.4
342,877 - -0.8
342,877 - +0.8
342,877 - +0.0
342,877 - -2.1
342,877 - +1.0
343,099 + MPMX19_04042 0.66 -0.5
343,099 + MPMX19_04042 0.66 -0.7
343,099 + MPMX19_04042 0.66 -1.2
343,099 + MPMX19_04042 0.66 +0.1
343,099 + MPMX19_04042 0.66 -0.9
343,100 - MPMX19_04042 0.67 -1.0
343,100 - MPMX19_04042 0.67 +0.3
343,100 - MPMX19_04042 0.67 -1.1
343,100 - MPMX19_04042 0.67 -1.9
343,100 - MPMX19_04042 0.67 -1.0
343,100 - MPMX19_04042 0.67 -0.2
343,100 - MPMX19_04042 0.67 -2.0
343,100 - MPMX19_04042 0.67 -0.4
343,100 - MPMX19_04042 0.67 -0.4
343,189 + -0.8
343,190 - -2.7
343,199 + -0.3
343,199 + -0.3
343,199 + +0.5
343,199 + -0.6
343,199 + +0.5
343,199 + +0.3
343,199 + +0.7
343,199 + -1.7
343,200 - -1.6
343,200 - +0.5
343,200 - -0.1
343,200 - -0.9
343,200 - -0.5
343,200 - +0.7
343,211 + -0.5
343,211 + -1.0
343,211 + +0.1
343,211 + +1.1
343,212 - +0.1
343,212 - +0.2
343,212 - +0.8
343,212 - -0.2
343,225 - +0.0
343,315 - -0.7
343,315 - -1.2
343,315 - +0.3
343,315 - -0.5
343,315 - -0.7
343,315 - -0.8
343,315 - +0.4
343,315 - +0.1
343,326 + -0.2
343,327 - +0.9
343,327 - +0.7
343,329 + -1.6
343,329 + -0.9
343,329 + -0.3
343,329 + -0.2
343,329 + +1.1
343,329 + -1.0
343,329 + +0.1
343,329 + +0.5
343,329 + -0.8
343,330 - -1.3
343,330 - -0.4
343,330 - -1.5
343,330 - -0.8
343,330 - -0.0
343,330 - -0.9
343,330 - -0.3
343,330 - +0.5
343,330 - -1.0
343,330 - -1.0
343,330 - -1.0
343,330 - +0.6
343,330 - +0.3
343,923 + MPMX19_04043 0.26 +1.5
343,923 + MPMX19_04043 0.26 -0.3
343,923 + MPMX19_04043 0.26 -1.0
343,923 + MPMX19_04043 0.26 -0.2
343,923 + MPMX19_04043 0.26 -1.5
343,923 + MPMX19_04043 0.26 -0.5
343,923 + MPMX19_04043 0.26 +0.0
343,923 + MPMX19_04043 0.26 -0.5
343,923 + MPMX19_04043 0.26 +0.0
343,923 + MPMX19_04043 0.26 +0.1
343,923 + MPMX19_04043 0.26 +1.5
343,923 + MPMX19_04043 0.26 -0.9
343,923 + MPMX19_04043 0.26 -1.0

Or see this region's nucleotide sequence