Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04037 and MPMX19_04038 are separated by 59 nucleotides MPMX19_04038 and MPMX19_04039 are separated by 55 nucleotides MPMX19_04039 and MPMX19_04040 are separated by 8 nucleotides
MPMX19_04037: MPMX19_04037 - 5-dehydro-2-deoxygluconokinase, at 335,594 to 337,525
_04037
MPMX19_04038: MPMX19_04038 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, at 337,585 to 339,432
_04038
MPMX19_04039: MPMX19_04039 - Inosose dehydratase, at 339,488 to 340,378
_04039
MPMX19_04040: MPMX19_04040 - Putative 3-oxopropanoate dehydrogenase, at 340,387 to 341,892
_04040
Position (kb) 337
338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 337.017 kb on - strand, within MPMX19_04037 at 337.017 kb on - strand, within MPMX19_04037 at 337.017 kb on - strand, within MPMX19_04037 at 337.017 kb on - strand, within MPMX19_04037 at 337.181 kb on + strand, within MPMX19_04037 at 337.181 kb on + strand, within MPMX19_04037 at 337.182 kb on - strand, within MPMX19_04037 at 337.182 kb on - strand, within MPMX19_04037 at 337.182 kb on - strand, within MPMX19_04037 at 337.182 kb on - strand, within MPMX19_04037 at 337.182 kb on - strand, within MPMX19_04037 at 337.182 kb on - strand, within MPMX19_04037 at 337.472 kb on + strand at 337.473 kb on - strand at 337.473 kb on - strand at 337.473 kb on - strand at 337.473 kb on - strand at 337.473 kb on - strand at 337.473 kb on - strand at 337.473 kb on - strand at 337.571 kb on - strand at 337.571 kb on - strand at 337.627 kb on + strand at 337.627 kb on + strand at 337.628 kb on - strand at 337.642 kb on + strand at 337.642 kb on + strand at 337.642 kb on + strand at 337.642 kb on + strand at 337.642 kb on + strand at 337.642 kb on + strand at 337.642 kb on + strand at 337.642 kb on + strand at 337.642 kb on + strand at 337.642 kb on + strand at 337.642 kb on + strand at 337.642 kb on + strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.643 kb on - strand at 337.807 kb on + strand, within MPMX19_04038 at 337.807 kb on + strand, within MPMX19_04038 at 337.808 kb on - strand, within MPMX19_04038 at 337.845 kb on + strand, within MPMX19_04038 at 337.845 kb on + strand, within MPMX19_04038 at 337.845 kb on + strand, within MPMX19_04038 at 337.845 kb on + strand, within MPMX19_04038 at 337.845 kb on + strand, within MPMX19_04038 at 337.845 kb on + strand, within MPMX19_04038 at 337.845 kb on + strand, within MPMX19_04038 at 337.845 kb on + strand, within MPMX19_04038 at 337.845 kb on + strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 337.846 kb on - strand, within MPMX19_04038 at 338.308 kb on + strand, within MPMX19_04038 at 338.308 kb on + strand, within MPMX19_04038 at 338.309 kb on - strand, within MPMX19_04038 at 338.309 kb on - strand, within MPMX19_04038 at 338.309 kb on - strand, within MPMX19_04038 at 338.309 kb on - strand, within MPMX19_04038 at 338.309 kb on - strand, within MPMX19_04038 at 338.511 kb on + strand, within MPMX19_04038 at 338.511 kb on + strand, within MPMX19_04038 at 338.511 kb on + strand, within MPMX19_04038 at 338.511 kb on + strand, within MPMX19_04038 at 338.512 kb on - strand, within MPMX19_04038 at 338.512 kb on - strand, within MPMX19_04038 at 338.512 kb on - strand, within MPMX19_04038 at 338.899 kb on + strand, within MPMX19_04038 at 338.899 kb on + strand, within MPMX19_04038 at 338.900 kb on - strand, within MPMX19_04038 at 338.900 kb on - strand, within MPMX19_04038 at 338.900 kb on - strand, within MPMX19_04038 at 338.900 kb on - strand, within MPMX19_04038 at 338.920 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.998 kb on + strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 338.999 kb on - strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.079 kb on + strand, within MPMX19_04038 at 339.080 kb on - strand, within MPMX19_04038 at 339.080 kb on - strand, within MPMX19_04038 at 339.080 kb on - strand, within MPMX19_04038 at 339.134 kb on + strand, within MPMX19_04038 at 339.134 kb on + strand, within MPMX19_04038 at 339.134 kb on + strand, within MPMX19_04038 at 339.134 kb on + strand, within MPMX19_04038 at 339.135 kb on - strand, within MPMX19_04038 at 339.135 kb on - strand, within MPMX19_04038 at 339.135 kb on - strand, within MPMX19_04038 at 339.151 kb on + strand, within MPMX19_04038 at 339.151 kb on + strand, within MPMX19_04038 at 339.152 kb on - strand, within MPMX19_04038 at 339.152 kb on - strand, within MPMX19_04038 at 339.152 kb on - strand, within MPMX19_04038 at 339.152 kb on - strand, within MPMX19_04038 at 339.152 kb on - strand, within MPMX19_04038 at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.283 kb on + strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.284 kb on - strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.400 kb on + strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.401 kb on - strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.535 kb on + strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.536 kb on - strand at 339.695 kb on + strand, within MPMX19_04039 at 339.695 kb on + strand, within MPMX19_04039 at 339.696 kb on - strand, within MPMX19_04039 at 339.696 kb on - strand, within MPMX19_04039 at 339.696 kb on - strand, within MPMX19_04039 at 339.696 kb on - strand, within MPMX19_04039 at 339.911 kb on + strand, within MPMX19_04039 at 339.911 kb on + strand, within MPMX19_04039 at 339.911 kb on + strand, within MPMX19_04039 at 339.911 kb on + strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.912 kb on - strand, within MPMX19_04039 at 339.941 kb on + strand, within MPMX19_04039 at 339.941 kb on + strand, within MPMX19_04039 at 339.941 kb on + strand, within MPMX19_04039 at 339.941 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.947 kb on + strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 339.948 kb on - strand, within MPMX19_04039 at 340.259 kb on + strand, within MPMX19_04039 at 340.260 kb on - strand, within MPMX19_04039 at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.322 kb on + strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.323 kb on - strand at 340.367 kb on + strand at 340.368 kb on - strand at 340.368 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 337,017 - MPMX19_04037 0.74 -0.6 337,017 - MPMX19_04037 0.74 -2.3 337,017 - MPMX19_04037 0.74 -0.4 337,017 - MPMX19_04037 0.74 -0.0 337,181 + MPMX19_04037 0.82 -0.4 337,181 + MPMX19_04037 0.82 +0.5 337,182 - MPMX19_04037 0.82 -1.1 337,182 - MPMX19_04037 0.82 +0.1 337,182 - MPMX19_04037 0.82 -1.7 337,182 - MPMX19_04037 0.82 -0.3 337,182 - MPMX19_04037 0.82 +0.5 337,182 - MPMX19_04037 0.82 -1.5 337,472 + -1.1 337,473 - -0.9 337,473 - +0.4 337,473 - -1.0 337,473 - -0.9 337,473 - -0.6 337,473 - +0.3 337,473 - -0.6 337,571 - -0.0 337,571 - +0.4 337,627 + +0.6 337,627 + +0.4 337,628 - +1.0 337,642 + -1.1 337,642 + +0.8 337,642 + -0.0 337,642 + +0.3 337,642 + -1.0 337,642 + -1.2 337,642 + +0.5 337,642 + -0.2 337,642 + +0.0 337,642 + -1.8 337,642 + -1.2 337,642 + -0.3 337,643 - -0.8 337,643 - +0.5 337,643 - +0.6 337,643 - -0.4 337,643 - -1.1 337,643 - +1.6 337,643 - -1.0 337,643 - +0.1 337,643 - -0.8 337,643 - +0.9 337,643 - +0.3 337,643 - -0.6 337,643 - +0.8 337,807 + MPMX19_04038 0.12 -0.7 337,807 + MPMX19_04038 0.12 -1.2 337,808 - MPMX19_04038 0.12 -0.8 337,845 + MPMX19_04038 0.14 -0.3 337,845 + MPMX19_04038 0.14 -0.9 337,845 + MPMX19_04038 0.14 -0.3 337,845 + MPMX19_04038 0.14 -0.1 337,845 + MPMX19_04038 0.14 -0.9 337,845 + MPMX19_04038 0.14 -1.0 337,845 + MPMX19_04038 0.14 -0.5 337,845 + MPMX19_04038 0.14 -1.3 337,845 + MPMX19_04038 0.14 -0.5 337,846 - MPMX19_04038 0.14 +0.0 337,846 - MPMX19_04038 0.14 +0.5 337,846 - MPMX19_04038 0.14 +0.5 337,846 - MPMX19_04038 0.14 -0.2 337,846 - MPMX19_04038 0.14 -2.0 337,846 - MPMX19_04038 0.14 -0.7 337,846 - MPMX19_04038 0.14 -1.7 337,846 - MPMX19_04038 0.14 -1.3 337,846 - MPMX19_04038 0.14 -0.9 337,846 - MPMX19_04038 0.14 -0.8 337,846 - MPMX19_04038 0.14 -1.6 337,846 - MPMX19_04038 0.14 +0.8 337,846 - MPMX19_04038 0.14 -0.9 338,308 + MPMX19_04038 0.39 -1.1 338,308 + MPMX19_04038 0.39 -0.5 338,309 - MPMX19_04038 0.39 -0.5 338,309 - MPMX19_04038 0.39 -0.4 338,309 - MPMX19_04038 0.39 -1.3 338,309 - MPMX19_04038 0.39 +0.3 338,309 - MPMX19_04038 0.39 -1.3 338,511 + MPMX19_04038 0.50 +0.1 338,511 + MPMX19_04038 0.50 -0.2 338,511 + MPMX19_04038 0.50 -0.1 338,511 + MPMX19_04038 0.50 -0.5 338,512 - MPMX19_04038 0.50 -0.1 338,512 - MPMX19_04038 0.50 +0.7 338,512 - MPMX19_04038 0.50 -0.5 338,899 + MPMX19_04038 0.71 -0.6 338,899 + MPMX19_04038 0.71 -1.5 338,900 - MPMX19_04038 0.71 -0.8 338,900 - MPMX19_04038 0.71 -1.3 338,900 - MPMX19_04038 0.71 -0.0 338,900 - MPMX19_04038 0.71 -0.7 338,920 + MPMX19_04038 0.72 +1.1 338,998 + MPMX19_04038 0.76 -2.3 338,998 + MPMX19_04038 0.76 +0.7 338,998 + MPMX19_04038 0.76 +0.5 338,998 + MPMX19_04038 0.76 -1.0 338,998 + MPMX19_04038 0.76 -0.2 338,998 + MPMX19_04038 0.76 -1.0 338,998 + MPMX19_04038 0.76 -0.7 338,998 + MPMX19_04038 0.76 +0.9 338,998 + MPMX19_04038 0.76 +1.5 338,998 + MPMX19_04038 0.76 -0.3 338,998 + MPMX19_04038 0.76 +0.5 338,999 - MPMX19_04038 0.77 -1.7 338,999 - MPMX19_04038 0.77 -1.5 338,999 - MPMX19_04038 0.77 +0.6 338,999 - MPMX19_04038 0.77 +0.0 338,999 - MPMX19_04038 0.77 -0.9 338,999 - MPMX19_04038 0.77 +0.0 338,999 - MPMX19_04038 0.77 -0.3 338,999 - MPMX19_04038 0.77 -0.1 338,999 - MPMX19_04038 0.77 +1.3 338,999 - MPMX19_04038 0.77 +0.2 338,999 - MPMX19_04038 0.77 -0.2 338,999 - MPMX19_04038 0.77 +0.3 338,999 - MPMX19_04038 0.77 -0.2 338,999 - MPMX19_04038 0.77 -0.7 338,999 - MPMX19_04038 0.77 +0.1 338,999 - MPMX19_04038 0.77 -1.2 338,999 - MPMX19_04038 0.77 -1.6 339,079 + MPMX19_04038 0.81 -1.0 339,079 + MPMX19_04038 0.81 +0.1 339,079 + MPMX19_04038 0.81 -0.5 339,079 + MPMX19_04038 0.81 +0.7 339,079 + MPMX19_04038 0.81 -0.3 339,079 + MPMX19_04038 0.81 -1.0 339,079 + MPMX19_04038 0.81 -1.2 339,080 - MPMX19_04038 0.81 -1.7 339,080 - MPMX19_04038 0.81 +1.7 339,080 - MPMX19_04038 0.81 +1.1 339,134 + MPMX19_04038 0.84 +2.1 339,134 + MPMX19_04038 0.84 -0.5 339,134 + MPMX19_04038 0.84 -0.8 339,134 + MPMX19_04038 0.84 +0.7 339,135 - MPMX19_04038 0.84 +0.3 339,135 - MPMX19_04038 0.84 +0.1 339,135 - MPMX19_04038 0.84 +0.5 339,151 + MPMX19_04038 0.85 +0.0 339,151 + MPMX19_04038 0.85 -0.2 339,152 - MPMX19_04038 0.85 +0.8 339,152 - MPMX19_04038 0.85 -1.2 339,152 - MPMX19_04038 0.85 -0.5 339,152 - MPMX19_04038 0.85 -2.9 339,152 - MPMX19_04038 0.85 +1.1 339,283 + +0.5 339,283 + -3.0 339,283 + -0.6 339,283 + -1.3 339,283 + -0.3 339,283 + -1.0 339,283 + -0.1 339,283 + -1.0 339,283 + -0.2 339,283 + -0.7 339,283 + -1.7 339,284 - -1.8 339,284 - -0.5 339,284 - -0.0 339,284 - -1.6 339,284 - -0.9 339,284 - +1.1 339,284 - +0.5 339,284 - +0.1 339,284 - -0.6 339,284 - -1.6 339,284 - -0.3 339,284 - -0.5 339,284 - +0.2 339,284 - -0.3 339,284 - +0.7 339,284 - -0.4 339,284 - -0.6 339,400 + +1.4 339,400 + -1.1 339,400 + +0.7 339,400 + -0.2 339,400 + +0.1 339,400 + +0.2 339,400 + +0.5 339,401 - -0.4 339,401 - -0.6 339,401 - +0.7 339,401 - -0.9 339,401 - +0.5 339,535 + +0.5 339,535 + -0.7 339,535 + +1.3 339,535 + +0.7 339,535 + -1.0 339,535 + -2.0 339,535 + -0.1 339,536 - -0.7 339,536 - -2.0 339,536 - -0.9 339,536 - -0.6 339,536 - -1.5 339,536 - -0.9 339,536 - -1.3 339,536 - +1.0 339,536 - +0.1 339,695 + MPMX19_04039 0.23 -0.3 339,695 + MPMX19_04039 0.23 +1.1 339,696 - MPMX19_04039 0.23 -0.3 339,696 - MPMX19_04039 0.23 -1.0 339,696 - MPMX19_04039 0.23 -1.5 339,696 - MPMX19_04039 0.23 -0.9 339,911 + MPMX19_04039 0.47 +1.5 339,911 + MPMX19_04039 0.47 -1.4 339,911 + MPMX19_04039 0.47 +0.3 339,911 + MPMX19_04039 0.47 +0.4 339,912 - MPMX19_04039 0.48 +1.8 339,912 - MPMX19_04039 0.48 -0.3 339,912 - MPMX19_04039 0.48 +0.2 339,912 - MPMX19_04039 0.48 +1.5 339,912 - MPMX19_04039 0.48 +1.1 339,912 - MPMX19_04039 0.48 -0.5 339,941 + MPMX19_04039 0.51 -1.0 339,941 + MPMX19_04039 0.51 +3.1 339,941 + MPMX19_04039 0.51 +0.3 339,941 + MPMX19_04039 0.51 -1.0 339,947 + MPMX19_04039 0.52 -0.1 339,947 + MPMX19_04039 0.52 +0.5 339,947 + MPMX19_04039 0.52 -1.6 339,947 + MPMX19_04039 0.52 +0.5 339,947 + MPMX19_04039 0.52 +0.8 339,947 + MPMX19_04039 0.52 -0.7 339,948 - MPMX19_04039 0.52 -0.9 339,948 - MPMX19_04039 0.52 -1.0 339,948 - MPMX19_04039 0.52 -0.7 339,948 - MPMX19_04039 0.52 -1.2 339,948 - MPMX19_04039 0.52 -1.8 339,948 - MPMX19_04039 0.52 +0.1 339,948 - MPMX19_04039 0.52 -0.5 339,948 - MPMX19_04039 0.52 -0.6 340,259 + MPMX19_04039 0.87 +0.4 340,260 - MPMX19_04039 0.87 -1.2 340,322 + -0.3 340,322 + +1.4 340,322 + -0.5 340,322 + -1.8 340,322 + -0.8 340,322 + -1.5 340,322 + +0.5 340,322 + -1.3 340,322 + -0.2 340,322 + +1.5 340,322 + -1.5 340,322 + -1.1 340,322 + -1.5 340,322 + -1.5 340,323 - -0.8 340,323 - -0.9 340,323 - -2.6 340,323 - +0.1 340,323 - -0.7 340,323 - -1.5 340,323 - -0.9 340,323 - -0.5 340,323 - +0.0 340,323 - -0.8 340,323 - -0.7 340,367 + -0.2 340,368 - +0.7 340,368 - -0.3
Or see this region's nucleotide sequence