Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04032 and MPMX19_04033 are separated by 460 nucleotides MPMX19_04033 and MPMX19_04034 overlap by 4 nucleotides
MPMX19_04032: MPMX19_04032 - hypothetical protein, at 329,333 to 329,869
_04032
MPMX19_04033: MPMX19_04033 - Colistin resistance protein EmrA, at 330,330 to 331,472
_04033
MPMX19_04034: MPMX19_04034 - Multidrug export protein EmrB, at 331,469 to 333,061
_04034
Position (kb) 330
331
332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 329.334 kb on + strand at 329.334 kb on + strand at 329.334 kb on + strand at 329.334 kb on + strand at 329.481 kb on + strand, within MPMX19_04032 at 329.481 kb on + strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.482 kb on - strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.493 kb on + strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.494 kb on - strand, within MPMX19_04032 at 329.940 kb on + strand at 329.956 kb on + strand at 329.956 kb on + strand at 329.957 kb on - strand at 329.957 kb on - strand at 329.957 kb on - strand at 329.957 kb on - strand at 329.957 kb on - strand at 329.957 kb on - strand at 329.960 kb on + strand at 329.960 kb on + strand at 330.000 kb on + strand at 330.000 kb on + strand at 330.037 kb on - strand at 330.054 kb on - strand at 330.069 kb on + strand at 330.069 kb on + strand at 330.069 kb on + strand at 330.070 kb on - strand at 330.079 kb on + strand at 330.080 kb on - strand at 330.325 kb on + strand at 330.325 kb on + strand at 330.325 kb on + strand at 330.325 kb on + strand at 330.325 kb on + strand at 330.326 kb on - strand at 330.326 kb on - strand at 330.519 kb on + strand, within MPMX19_04033 at 330.519 kb on + strand, within MPMX19_04033 at 330.519 kb on + strand, within MPMX19_04033 at 330.520 kb on - strand, within MPMX19_04033 at 330.520 kb on - strand, within MPMX19_04033 at 330.520 kb on - strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.525 kb on + strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.526 kb on - strand, within MPMX19_04033 at 330.549 kb on + strand, within MPMX19_04033 at 330.549 kb on + strand, within MPMX19_04033 at 330.615 kb on + strand, within MPMX19_04033 at 330.615 kb on + strand, within MPMX19_04033 at 330.615 kb on + strand, within MPMX19_04033 at 330.615 kb on + strand, within MPMX19_04033 at 330.616 kb on - strand, within MPMX19_04033 at 330.616 kb on - strand, within MPMX19_04033 at 330.616 kb on - strand, within MPMX19_04033 at 330.616 kb on - strand, within MPMX19_04033 at 330.757 kb on - strand, within MPMX19_04033 at 330.757 kb on - strand, within MPMX19_04033 at 330.757 kb on - strand, within MPMX19_04033 at 330.757 kb on - strand, within MPMX19_04033 at 330.757 kb on - strand, within MPMX19_04033 at 331.077 kb on + strand, within MPMX19_04033 at 331.077 kb on + strand, within MPMX19_04033 at 331.077 kb on + strand, within MPMX19_04033 at 331.077 kb on + strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.078 kb on - strand, within MPMX19_04033 at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.362 kb on + strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.363 kb on - strand at 331.495 kb on + strand at 331.495 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.622 kb on + strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.623 kb on - strand at 331.679 kb on + strand, within MPMX19_04034 at 331.680 kb on - strand, within MPMX19_04034 at 331.680 kb on - strand, within MPMX19_04034 at 331.680 kb on - strand, within MPMX19_04034 at 331.680 kb on - strand, within MPMX19_04034 at 331.733 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.751 kb on + strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 331.752 kb on - strand, within MPMX19_04034 at 332.423 kb on + strand, within MPMX19_04034 at 332.423 kb on + strand, within MPMX19_04034 at 332.423 kb on + strand, within MPMX19_04034 at 332.423 kb on + strand, within MPMX19_04034 at 332.423 kb on + strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.424 kb on - strand, within MPMX19_04034 at 332.427 kb on - strand, within MPMX19_04034 at 332.427 kb on - strand, within MPMX19_04034 at 332.427 kb on - strand, within MPMX19_04034
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 329,334 + -0.0 329,334 + -0.8 329,334 + -0.3 329,334 + -0.5 329,481 + MPMX19_04032 0.28 +0.3 329,481 + MPMX19_04032 0.28 +0.1 329,482 - MPMX19_04032 0.28 -0.8 329,482 - MPMX19_04032 0.28 -0.2 329,482 - MPMX19_04032 0.28 +0.5 329,482 - MPMX19_04032 0.28 -0.0 329,482 - MPMX19_04032 0.28 -1.6 329,482 - MPMX19_04032 0.28 -1.7 329,493 + MPMX19_04032 0.30 -1.0 329,493 + MPMX19_04032 0.30 -0.0 329,493 + MPMX19_04032 0.30 -0.2 329,493 + MPMX19_04032 0.30 -0.8 329,493 + MPMX19_04032 0.30 +0.5 329,493 + MPMX19_04032 0.30 -0.5 329,493 + MPMX19_04032 0.30 -0.9 329,493 + MPMX19_04032 0.30 -1.6 329,493 + MPMX19_04032 0.30 +0.5 329,493 + MPMX19_04032 0.30 +0.1 329,493 + MPMX19_04032 0.30 +0.6 329,493 + MPMX19_04032 0.30 -0.9 329,493 + MPMX19_04032 0.30 -0.5 329,493 + MPMX19_04032 0.30 -0.8 329,493 + MPMX19_04032 0.30 -0.5 329,493 + MPMX19_04032 0.30 -1.2 329,494 - MPMX19_04032 0.30 -2.0 329,494 - MPMX19_04032 0.30 -0.3 329,494 - MPMX19_04032 0.30 -2.0 329,494 - MPMX19_04032 0.30 -1.1 329,494 - MPMX19_04032 0.30 +0.8 329,494 - MPMX19_04032 0.30 -0.3 329,494 - MPMX19_04032 0.30 -0.2 329,494 - MPMX19_04032 0.30 -0.9 329,494 - MPMX19_04032 0.30 -0.7 329,494 - MPMX19_04032 0.30 -2.3 329,494 - MPMX19_04032 0.30 -0.3 329,494 - MPMX19_04032 0.30 -0.6 329,494 - MPMX19_04032 0.30 -1.0 329,494 - MPMX19_04032 0.30 -0.1 329,494 - MPMX19_04032 0.30 -1.4 329,494 - MPMX19_04032 0.30 -0.7 329,940 + +0.7 329,956 + -1.1 329,956 + -2.5 329,957 - -0.1 329,957 - -0.8 329,957 - -0.0 329,957 - +0.3 329,957 - -0.7 329,957 - -0.3 329,960 + -1.0 329,960 + -1.0 330,000 + +0.8 330,000 + +1.1 330,037 - -1.3 330,054 - -0.6 330,069 + +0.3 330,069 + -0.9 330,069 + -0.2 330,070 - +0.9 330,079 + +0.5 330,080 - -0.6 330,325 + +0.0 330,325 + -0.7 330,325 + +0.4 330,325 + -0.6 330,325 + -0.4 330,326 - -1.2 330,326 - +0.7 330,519 + MPMX19_04033 0.17 -1.1 330,519 + MPMX19_04033 0.17 +0.5 330,519 + MPMX19_04033 0.17 +0.3 330,520 - MPMX19_04033 0.17 -1.8 330,520 - MPMX19_04033 0.17 +0.2 330,520 - MPMX19_04033 0.17 +0.8 330,525 + MPMX19_04033 0.17 -1.2 330,525 + MPMX19_04033 0.17 +2.7 330,525 + MPMX19_04033 0.17 -0.0 330,525 + MPMX19_04033 0.17 +0.7 330,525 + MPMX19_04033 0.17 -1.1 330,525 + MPMX19_04033 0.17 -0.5 330,526 - MPMX19_04033 0.17 +0.0 330,526 - MPMX19_04033 0.17 +0.9 330,526 - MPMX19_04033 0.17 -0.9 330,526 - MPMX19_04033 0.17 -1.2 330,526 - MPMX19_04033 0.17 +0.6 330,526 - MPMX19_04033 0.17 -1.0 330,526 - MPMX19_04033 0.17 +0.1 330,526 - MPMX19_04033 0.17 +1.0 330,526 - MPMX19_04033 0.17 -0.5 330,549 + MPMX19_04033 0.19 -0.7 330,549 + MPMX19_04033 0.19 -0.7 330,615 + MPMX19_04033 0.25 -1.3 330,615 + MPMX19_04033 0.25 +0.5 330,615 + MPMX19_04033 0.25 +1.8 330,615 + MPMX19_04033 0.25 -1.2 330,616 - MPMX19_04033 0.25 -0.4 330,616 - MPMX19_04033 0.25 +0.4 330,616 - MPMX19_04033 0.25 -1.3 330,616 - MPMX19_04033 0.25 +0.2 330,757 - MPMX19_04033 0.37 -0.3 330,757 - MPMX19_04033 0.37 +0.5 330,757 - MPMX19_04033 0.37 -0.2 330,757 - MPMX19_04033 0.37 -1.0 330,757 - MPMX19_04033 0.37 +0.9 331,077 + MPMX19_04033 0.65 +0.7 331,077 + MPMX19_04033 0.65 -1.1 331,077 + MPMX19_04033 0.65 +0.5 331,077 + MPMX19_04033 0.65 -0.5 331,078 - MPMX19_04033 0.65 -0.0 331,078 - MPMX19_04033 0.65 +1.1 331,078 - MPMX19_04033 0.65 -0.1 331,078 - MPMX19_04033 0.65 -0.9 331,078 - MPMX19_04033 0.65 +2.1 331,078 - MPMX19_04033 0.65 -1.0 331,078 - MPMX19_04033 0.65 -0.7 331,078 - MPMX19_04033 0.65 -0.3 331,362 + -1.2 331,362 + +0.0 331,362 + -0.1 331,362 + -1.0 331,362 + +0.3 331,362 + -0.5 331,362 + -0.9 331,362 + +0.7 331,362 + +0.5 331,362 + -0.6 331,362 + +0.1 331,362 + -0.7 331,362 + -2.0 331,362 + +0.8 331,362 + +0.2 331,362 + -0.2 331,362 + +0.1 331,362 + +0.5 331,362 + +0.5 331,362 + -1.0 331,362 + -1.0 331,362 + -0.3 331,362 + -0.2 331,362 + -0.7 331,362 + -2.3 331,362 + +0.3 331,362 + -1.3 331,362 + -0.5 331,362 + -1.2 331,362 + -1.6 331,362 + +0.7 331,362 + -0.6 331,363 - +0.1 331,363 - +0.5 331,363 - +0.8 331,363 - -0.7 331,363 - -0.2 331,363 - +0.3 331,363 - +0.5 331,363 - +0.4 331,363 - -0.1 331,363 - -0.9 331,363 - -1.7 331,363 - -0.1 331,363 - -1.6 331,363 - -0.6 331,363 - -0.8 331,363 - -1.2 331,363 - +0.0 331,363 - +0.8 331,363 - -0.8 331,363 - +0.1 331,363 - -2.1 331,363 - +1.3 331,363 - -0.0 331,363 - -1.6 331,363 - -0.0 331,363 - -1.3 331,363 - +0.3 331,363 - +1.1 331,363 - -0.5 331,363 - -1.0 331,363 - +0.5 331,363 - +0.1 331,363 - -1.4 331,363 - -1.3 331,363 - -1.5 331,495 + -0.2 331,495 + -1.6 331,622 + +1.1 331,622 + +0.5 331,622 + -0.9 331,622 + +0.2 331,622 + -0.8 331,622 + -0.5 331,622 + +0.1 331,622 + -0.5 331,622 + -0.2 331,623 - -0.5 331,623 - -1.8 331,623 - -1.1 331,623 - +0.3 331,623 - -0.3 331,623 - -2.1 331,623 - -0.9 331,623 - -1.0 331,623 - -0.0 331,623 - -0.1 331,623 - +0.3 331,623 - +0.0 331,623 - +0.0 331,623 - +0.1 331,623 - -0.7 331,679 + MPMX19_04034 0.13 -2.7 331,680 - MPMX19_04034 0.13 +0.3 331,680 - MPMX19_04034 0.13 +0.8 331,680 - MPMX19_04034 0.13 -1.3 331,680 - MPMX19_04034 0.13 +0.4 331,733 + MPMX19_04034 0.17 -1.6 331,751 + MPMX19_04034 0.18 +0.4 331,751 + MPMX19_04034 0.18 +2.1 331,751 + MPMX19_04034 0.18 -0.3 331,751 + MPMX19_04034 0.18 -0.4 331,751 + MPMX19_04034 0.18 -2.5 331,751 + MPMX19_04034 0.18 -0.2 331,751 + MPMX19_04034 0.18 -0.4 331,751 + MPMX19_04034 0.18 -2.5 331,751 + MPMX19_04034 0.18 +0.2 331,751 + MPMX19_04034 0.18 -1.5 331,751 + MPMX19_04034 0.18 +0.0 331,752 - MPMX19_04034 0.18 -0.8 331,752 - MPMX19_04034 0.18 -1.5 331,752 - MPMX19_04034 0.18 -1.4 331,752 - MPMX19_04034 0.18 +0.3 331,752 - MPMX19_04034 0.18 +0.3 331,752 - MPMX19_04034 0.18 -0.9 331,752 - MPMX19_04034 0.18 -1.7 332,423 + MPMX19_04034 0.60 -1.3 332,423 + MPMX19_04034 0.60 -0.6 332,423 + MPMX19_04034 0.60 -0.5 332,423 + MPMX19_04034 0.60 +0.4 332,423 + MPMX19_04034 0.60 +0.3 332,424 - MPMX19_04034 0.60 -0.1 332,424 - MPMX19_04034 0.60 +0.3 332,424 - MPMX19_04034 0.60 -1.0 332,424 - MPMX19_04034 0.60 -0.2 332,424 - MPMX19_04034 0.60 -1.2 332,424 - MPMX19_04034 0.60 +0.0 332,424 - MPMX19_04034 0.60 +0.3 332,424 - MPMX19_04034 0.60 +0.9 332,424 - MPMX19_04034 0.60 -1.2 332,424 - MPMX19_04034 0.60 +0.3 332,424 - MPMX19_04034 0.60 -0.5 332,424 - MPMX19_04034 0.60 -1.3 332,427 - MPMX19_04034 0.60 -1.3 332,427 - MPMX19_04034 0.60 -1.2 332,427 - MPMX19_04034 0.60 -1.6
Or see this region's nucleotide sequence