Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04024 and MPMX19_04025 are separated by 105 nucleotides MPMX19_04025 and MPMX19_04026 are separated by 226 nucleotides MPMX19_04026 and MPMX19_04027 are separated by 236 nucleotides MPMX19_04027 and MPMX19_04028 are separated by 30 nucleotides
MPMX19_04024: MPMX19_04024 - hypothetical protein, at 320,845 to 321,051
_04024
MPMX19_04025: MPMX19_04025 - hypothetical protein, at 321,157 to 321,384
_04025
MPMX19_04026: MPMX19_04026 - hypothetical protein, at 321,611 to 322,474
_04026
MPMX19_04027: MPMX19_04027 - Inosine-5'-monophosphate dehydrogenase, at 322,711 to 323,412
_04027
MPMX19_04028: MPMX19_04028 - Gamma-glutamylputrescine oxidoreductase, at 323,443 to 324,738
_04028
Position (kb) 321
322
323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 320.614 kb on + strand at 320.614 kb on + strand at 320.614 kb on + strand at 320.615 kb on - strand at 320.637 kb on - strand at 320.637 kb on - strand at 320.646 kb on + strand at 320.647 kb on - strand at 320.663 kb on + strand at 320.664 kb on - strand at 320.664 kb on - strand at 320.675 kb on - strand at 320.709 kb on - strand at 320.732 kb on + strand at 320.732 kb on + strand at 320.780 kb on - strand at 320.780 kb on - strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.193 kb on - strand, within MPMX19_04025 at 321.207 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.501 kb on + strand at 321.501 kb on + strand at 321.501 kb on + strand at 321.501 kb on + strand at 321.501 kb on + strand at 321.502 kb on - strand at 321.522 kb on + strand at 321.522 kb on + strand at 321.522 kb on + strand at 321.522 kb on + strand at 321.523 kb on - strand at 321.523 kb on - strand at 321.523 kb on - strand at 322.284 kb on + strand, within MPMX19_04026 at 322.284 kb on + strand, within MPMX19_04026 at 322.285 kb on - strand, within MPMX19_04026 at 322.285 kb on - strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.316 kb on + strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.317 kb on - strand, within MPMX19_04026 at 322.409 kb on + strand at 322.410 kb on - strand at 322.410 kb on - strand at 322.410 kb on - strand at 322.472 kb on + strand at 322.472 kb on + strand at 322.472 kb on + strand at 322.473 kb on - strand at 322.473 kb on - strand at 322.485 kb on + strand at 322.486 kb on - strand at 322.535 kb on + strand at 322.535 kb on + strand at 322.536 kb on - strand at 322.603 kb on - strand at 322.630 kb on + strand at 322.642 kb on - strand at 322.671 kb on + strand at 322.671 kb on + strand at 322.671 kb on + strand at 322.672 kb on - strand at 322.672 kb on - strand at 322.672 kb on - strand at 323.319 kb on - strand, within MPMX19_04027 at 323.410 kb on + strand at 323.410 kb on + strand at 323.410 kb on + strand at 323.411 kb on - strand at 323.415 kb on + strand at 323.415 kb on + strand at 323.415 kb on + strand at 323.416 kb on - strand at 323.416 kb on - strand at 323.416 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 320,614 + -1.3 320,614 + -0.1 320,614 + -0.4 320,615 - -0.5 320,637 - +0.0 320,637 - +1.4 320,646 + -0.2 320,647 - -1.0 320,663 + +0.8 320,664 - +1.3 320,664 - -0.5 320,675 - +0.1 320,709 - -2.2 320,732 + +0.1 320,732 + +0.4 320,780 - +2.1 320,780 - +2.5 320,854 + -2.0 320,854 + -1.1 320,854 + -0.6 320,854 + +1.0 320,854 + -0.2 320,854 + +1.0 320,854 + -2.0 320,854 + -1.2 320,854 + +0.4 320,854 + -2.1 320,854 + -2.3 320,855 - +0.1 320,855 - -1.2 320,855 - -1.3 320,855 - -2.0 320,855 - +0.1 320,855 - +0.5 320,855 - +0.7 320,855 - +0.1 320,855 - -1.5 320,855 - -0.7 320,855 - -2.0 320,855 - -1.2 320,855 - +0.2 320,855 - -0.5 320,855 - -0.3 320,855 - -0.6 320,855 - -0.7 320,855 - -1.2 320,855 - +1.1 320,855 - +0.5 320,855 - +0.2 320,855 - -0.1 320,855 - +0.1 320,855 - -1.9 320,855 - -0.2 320,855 - -0.9 320,855 - +0.0 320,855 - -1.4 320,855 - +0.5 320,855 - -0.6 321,192 + MPMX19_04025 0.15 -0.7 321,192 + MPMX19_04025 0.15 -1.3 321,192 + MPMX19_04025 0.15 -1.9 321,192 + MPMX19_04025 0.15 -0.6 321,192 + MPMX19_04025 0.15 -0.7 321,192 + MPMX19_04025 0.15 -0.0 321,192 + MPMX19_04025 0.15 +0.1 321,193 - MPMX19_04025 0.16 +0.5 321,207 + MPMX19_04025 0.22 +1.5 321,307 + MPMX19_04025 0.66 +0.1 321,307 + MPMX19_04025 0.66 -1.0 321,307 + MPMX19_04025 0.66 +0.5 321,307 + MPMX19_04025 0.66 -1.3 321,308 - MPMX19_04025 0.66 -1.1 321,308 - MPMX19_04025 0.66 +0.7 321,308 - MPMX19_04025 0.66 +0.1 321,308 - MPMX19_04025 0.66 -2.8 321,308 - MPMX19_04025 0.66 +0.4 321,501 + -1.7 321,501 + +0.8 321,501 + -2.0 321,501 + +1.3 321,501 + +0.5 321,502 - +0.2 321,522 + +1.5 321,522 + -0.9 321,522 + +0.1 321,522 + -0.7 321,523 - -1.3 321,523 - -0.7 321,523 - +1.5 322,284 + MPMX19_04026 0.78 -0.5 322,284 + MPMX19_04026 0.78 -0.0 322,285 - MPMX19_04026 0.78 -1.0 322,285 - MPMX19_04026 0.78 -0.3 322,316 + MPMX19_04026 0.82 -0.8 322,316 + MPMX19_04026 0.82 +0.2 322,316 + MPMX19_04026 0.82 -0.2 322,316 + MPMX19_04026 0.82 -1.2 322,316 + MPMX19_04026 0.82 -0.4 322,316 + MPMX19_04026 0.82 -0.5 322,316 + MPMX19_04026 0.82 +1.2 322,316 + MPMX19_04026 0.82 -1.2 322,316 + MPMX19_04026 0.82 -0.6 322,317 - MPMX19_04026 0.82 -1.6 322,317 - MPMX19_04026 0.82 -1.0 322,317 - MPMX19_04026 0.82 +0.5 322,317 - MPMX19_04026 0.82 -1.0 322,317 - MPMX19_04026 0.82 -0.3 322,317 - MPMX19_04026 0.82 +1.1 322,317 - MPMX19_04026 0.82 -1.9 322,409 + +1.1 322,410 - +2.1 322,410 - -1.5 322,410 - -0.0 322,472 + -1.3 322,472 + -1.5 322,472 + -0.1 322,473 - -0.9 322,473 - +0.7 322,485 + +1.7 322,486 - +1.1 322,535 + +2.1 322,535 + -0.9 322,536 - +0.3 322,603 - +0.1 322,630 + +0.3 322,642 - -1.2 322,671 + -1.0 322,671 + -1.7 322,671 + -2.7 322,672 - -0.1 322,672 - +0.5 322,672 - -0.5 323,319 - MPMX19_04027 0.87 -0.3 323,410 + +0.9 323,410 + +1.1 323,410 + -1.3 323,411 - -0.9 323,415 + -1.1 323,415 + +0.1 323,415 + +0.5 323,416 - -2.0 323,416 - -2.0 323,416 - -0.5
Or see this region's nucleotide sequence