Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04019 and MPMX19_04020 are separated by 1 nucleotides MPMX19_04020 and MPMX19_04021 are separated by 14 nucleotides
MPMX19_04019: MPMX19_04019 - N-acyl-D-glutamate deacylase, at 314,316 to 315,920
_04019
MPMX19_04020: MPMX19_04020 - putative D,D-dipeptide transport system permease protein DdpC, at 315,922 to 316,830
_04020
MPMX19_04021: MPMX19_04021 - Dipeptide transport system permease protein DppB, at 316,845 to 317,786
_04021
Position (kb) 315
316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.070 kb on + strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.071 kb on - strand, within MPMX19_04019 at 315.148 kb on + strand, within MPMX19_04019 at 315.148 kb on + strand, within MPMX19_04019 at 315.250 kb on + strand, within MPMX19_04019 at 315.250 kb on + strand, within MPMX19_04019 at 315.250 kb on + strand, within MPMX19_04019 at 315.250 kb on + strand, within MPMX19_04019 at 315.250 kb on + strand, within MPMX19_04019 at 315.250 kb on + strand, within MPMX19_04019 at 315.250 kb on + strand, within MPMX19_04019 at 315.250 kb on + strand, within MPMX19_04019 at 315.250 kb on + strand, within MPMX19_04019 at 315.251 kb on - strand, within MPMX19_04019 at 315.251 kb on - strand, within MPMX19_04019 at 315.251 kb on - strand, within MPMX19_04019 at 315.251 kb on - strand, within MPMX19_04019 at 315.251 kb on - strand, within MPMX19_04019 at 315.634 kb on + strand, within MPMX19_04019 at 315.634 kb on + strand, within MPMX19_04019 at 315.635 kb on - strand, within MPMX19_04019 at 315.635 kb on - strand, within MPMX19_04019 at 315.635 kb on - strand, within MPMX19_04019 at 315.923 kb on + strand at 315.923 kb on + strand at 315.923 kb on + strand at 315.923 kb on + strand at 315.923 kb on + strand at 315.923 kb on + strand at 315.923 kb on + strand at 315.923 kb on + strand at 315.923 kb on + strand at 315.923 kb on + strand at 315.924 kb on - strand at 315.924 kb on - strand at 315.924 kb on - strand at 315.924 kb on - strand at 315.924 kb on - strand at 315.924 kb on - strand at 315.924 kb on - strand at 315.924 kb on - strand at 315.924 kb on - strand at 315.924 kb on - strand at 315.924 kb on - strand at 316.049 kb on + strand, within MPMX19_04020 at 316.049 kb on + strand, within MPMX19_04020 at 316.050 kb on - strand, within MPMX19_04020 at 316.050 kb on - strand, within MPMX19_04020 at 316.050 kb on - strand, within MPMX19_04020 at 316.146 kb on - strand, within MPMX19_04020 at 316.146 kb on - strand, within MPMX19_04020 at 316.316 kb on + strand, within MPMX19_04020 at 316.316 kb on + strand, within MPMX19_04020 at 316.316 kb on + strand, within MPMX19_04020 at 316.316 kb on + strand, within MPMX19_04020 at 316.317 kb on - strand, within MPMX19_04020 at 316.317 kb on - strand, within MPMX19_04020 at 316.317 kb on - strand, within MPMX19_04020 at 316.317 kb on - strand, within MPMX19_04020 at 316.346 kb on + strand, within MPMX19_04020 at 316.346 kb on + strand, within MPMX19_04020 at 316.346 kb on + strand, within MPMX19_04020 at 316.346 kb on + strand, within MPMX19_04020 at 316.346 kb on + strand, within MPMX19_04020 at 316.346 kb on + strand, within MPMX19_04020 at 316.347 kb on - strand, within MPMX19_04020 at 316.347 kb on - strand, within MPMX19_04020 at 316.347 kb on - strand, within MPMX19_04020 at 316.347 kb on - strand, within MPMX19_04020 at 316.347 kb on - strand, within MPMX19_04020 at 316.347 kb on - strand, within MPMX19_04020 at 316.347 kb on - strand, within MPMX19_04020 at 316.347 kb on - strand, within MPMX19_04020 at 316.452 kb on + strand, within MPMX19_04020 at 316.452 kb on + strand, within MPMX19_04020 at 316.452 kb on + strand, within MPMX19_04020 at 316.453 kb on - strand, within MPMX19_04020 at 316.453 kb on - strand, within MPMX19_04020 at 316.454 kb on + strand, within MPMX19_04020 at 316.454 kb on + strand, within MPMX19_04020 at 316.454 kb on + strand, within MPMX19_04020 at 316.454 kb on + strand, within MPMX19_04020 at 316.454 kb on + strand, within MPMX19_04020 at 316.571 kb on + strand, within MPMX19_04020 at 316.571 kb on + strand, within MPMX19_04020 at 316.571 kb on + strand, within MPMX19_04020 at 316.572 kb on - strand, within MPMX19_04020 at 316.869 kb on + strand at 316.876 kb on + strand at 316.876 kb on + strand at 316.876 kb on + strand at 316.877 kb on - strand at 316.877 kb on - strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.909 kb on + strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 316.910 kb on - strand at 317.152 kb on + strand, within MPMX19_04021 at 317.152 kb on + strand, within MPMX19_04021 at 317.152 kb on + strand, within MPMX19_04021 at 317.152 kb on + strand, within MPMX19_04021 at 317.152 kb on + strand, within MPMX19_04021 at 317.152 kb on + strand, within MPMX19_04021 at 317.152 kb on + strand, within MPMX19_04021 at 317.153 kb on - strand, within MPMX19_04021 at 317.153 kb on - strand, within MPMX19_04021 at 317.153 kb on - strand, within MPMX19_04021 at 317.153 kb on - strand, within MPMX19_04021 at 317.153 kb on - strand, within MPMX19_04021 at 317.153 kb on - strand, within MPMX19_04021 at 317.326 kb on + strand, within MPMX19_04021 at 317.326 kb on + strand, within MPMX19_04021 at 317.326 kb on + strand, within MPMX19_04021 at 317.326 kb on + strand, within MPMX19_04021 at 317.326 kb on + strand, within MPMX19_04021 at 317.326 kb on + strand, within MPMX19_04021 at 317.326 kb on + strand, within MPMX19_04021 at 317.326 kb on + strand, within MPMX19_04021 at 317.326 kb on + strand, within MPMX19_04021 at 317.326 kb on + strand, within MPMX19_04021 at 317.326 kb on + strand, within MPMX19_04021 at 317.327 kb on - strand, within MPMX19_04021 at 317.327 kb on - strand, within MPMX19_04021 at 317.327 kb on - strand, within MPMX19_04021 at 317.327 kb on - strand, within MPMX19_04021 at 317.584 kb on + strand, within MPMX19_04021 at 317.584 kb on + strand, within MPMX19_04021 at 317.584 kb on + strand, within MPMX19_04021 at 317.584 kb on + strand, within MPMX19_04021 at 317.584 kb on + strand, within MPMX19_04021 at 317.585 kb on - strand, within MPMX19_04021 at 317.585 kb on - strand, within MPMX19_04021 at 317.585 kb on - strand, within MPMX19_04021 at 317.585 kb on - strand, within MPMX19_04021 at 317.776 kb on + strand at 317.776 kb on + strand at 317.776 kb on + strand at 317.776 kb on + strand at 317.776 kb on + strand at 317.777 kb on - strand at 317.777 kb on - strand at 317.777 kb on - strand at 317.777 kb on - strand at 317.777 kb on - strand at 317.777 kb on - strand at 317.777 kb on - strand at 317.777 kb on - strand at 317.777 kb on - strand at 317.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 315,070 + MPMX19_04019 0.47 -1.3 315,070 + MPMX19_04019 0.47 +0.4 315,070 + MPMX19_04019 0.47 +1.1 315,070 + MPMX19_04019 0.47 -2.9 315,070 + MPMX19_04019 0.47 -1.9 315,070 + MPMX19_04019 0.47 -0.6 315,070 + MPMX19_04019 0.47 -1.1 315,070 + MPMX19_04019 0.47 +0.8 315,070 + MPMX19_04019 0.47 -1.0 315,070 + MPMX19_04019 0.47 -0.7 315,070 + MPMX19_04019 0.47 -0.3 315,070 + MPMX19_04019 0.47 -0.5 315,070 + MPMX19_04019 0.47 +0.4 315,070 + MPMX19_04019 0.47 -0.9 315,070 + MPMX19_04019 0.47 -1.3 315,070 + MPMX19_04019 0.47 -1.2 315,070 + MPMX19_04019 0.47 -0.9 315,070 + MPMX19_04019 0.47 +1.9 315,070 + MPMX19_04019 0.47 -0.7 315,070 + MPMX19_04019 0.47 -0.9 315,070 + MPMX19_04019 0.47 +0.5 315,070 + MPMX19_04019 0.47 -1.5 315,070 + MPMX19_04019 0.47 -1.9 315,070 + MPMX19_04019 0.47 -1.9 315,070 + MPMX19_04019 0.47 -1.1 315,070 + MPMX19_04019 0.47 +0.4 315,070 + MPMX19_04019 0.47 -0.2 315,070 + MPMX19_04019 0.47 +1.2 315,070 + MPMX19_04019 0.47 -1.0 315,070 + MPMX19_04019 0.47 -0.5 315,070 + MPMX19_04019 0.47 -0.7 315,070 + MPMX19_04019 0.47 +0.0 315,070 + MPMX19_04019 0.47 +0.3 315,070 + MPMX19_04019 0.47 +0.4 315,070 + MPMX19_04019 0.47 -0.7 315,071 - MPMX19_04019 0.47 -0.2 315,071 - MPMX19_04019 0.47 +0.7 315,071 - MPMX19_04019 0.47 -0.0 315,071 - MPMX19_04019 0.47 -1.4 315,071 - MPMX19_04019 0.47 +0.4 315,071 - MPMX19_04019 0.47 -0.4 315,071 - MPMX19_04019 0.47 -1.2 315,071 - MPMX19_04019 0.47 -0.3 315,071 - MPMX19_04019 0.47 -1.3 315,071 - MPMX19_04019 0.47 -0.1 315,071 - MPMX19_04019 0.47 -0.0 315,071 - MPMX19_04019 0.47 -0.6 315,071 - MPMX19_04019 0.47 +0.0 315,071 - MPMX19_04019 0.47 -1.5 315,071 - MPMX19_04019 0.47 +0.8 315,071 - MPMX19_04019 0.47 +1.1 315,071 - MPMX19_04019 0.47 -0.7 315,071 - MPMX19_04019 0.47 +0.8 315,071 - MPMX19_04019 0.47 -1.0 315,071 - MPMX19_04019 0.47 -1.7 315,071 - MPMX19_04019 0.47 -0.5 315,071 - MPMX19_04019 0.47 +0.3 315,071 - MPMX19_04019 0.47 +0.4 315,071 - MPMX19_04019 0.47 -0.2 315,071 - MPMX19_04019 0.47 -1.2 315,071 - MPMX19_04019 0.47 -2.0 315,071 - MPMX19_04019 0.47 -0.6 315,148 + MPMX19_04019 0.52 -0.5 315,148 + MPMX19_04019 0.52 -0.2 315,250 + MPMX19_04019 0.58 +0.0 315,250 + MPMX19_04019 0.58 +0.3 315,250 + MPMX19_04019 0.58 -0.9 315,250 + MPMX19_04019 0.58 -0.2 315,250 + MPMX19_04019 0.58 -0.9 315,250 + MPMX19_04019 0.58 -1.3 315,250 + MPMX19_04019 0.58 -0.9 315,250 + MPMX19_04019 0.58 -0.5 315,250 + MPMX19_04019 0.58 -1.5 315,251 - MPMX19_04019 0.58 -1.7 315,251 - MPMX19_04019 0.58 +0.5 315,251 - MPMX19_04019 0.58 +0.1 315,251 - MPMX19_04019 0.58 +0.1 315,251 - MPMX19_04019 0.58 +0.1 315,634 + MPMX19_04019 0.82 -0.3 315,634 + MPMX19_04019 0.82 -0.6 315,635 - MPMX19_04019 0.82 -1.4 315,635 - MPMX19_04019 0.82 +1.7 315,635 - MPMX19_04019 0.82 +1.1 315,923 + +0.1 315,923 + -0.2 315,923 + -0.7 315,923 + -1.3 315,923 + -2.4 315,923 + +0.5 315,923 + -0.3 315,923 + -0.0 315,923 + +0.4 315,923 + +0.3 315,924 - -1.6 315,924 - -1.0 315,924 - -0.0 315,924 - -0.2 315,924 - -1.6 315,924 - -1.2 315,924 - -0.6 315,924 - +1.5 315,924 - -1.5 315,924 - +1.1 315,924 - -1.2 316,049 + MPMX19_04020 0.14 -0.7 316,049 + MPMX19_04020 0.14 +1.1 316,050 - MPMX19_04020 0.14 -1.3 316,050 - MPMX19_04020 0.14 -1.0 316,050 - MPMX19_04020 0.14 -1.5 316,146 - MPMX19_04020 0.25 -0.3 316,146 - MPMX19_04020 0.25 +0.9 316,316 + MPMX19_04020 0.43 -0.7 316,316 + MPMX19_04020 0.43 -0.2 316,316 + MPMX19_04020 0.43 -0.5 316,316 + MPMX19_04020 0.43 +2.1 316,317 - MPMX19_04020 0.43 -1.1 316,317 - MPMX19_04020 0.43 -0.2 316,317 - MPMX19_04020 0.43 -0.1 316,317 - MPMX19_04020 0.43 -0.0 316,346 + MPMX19_04020 0.47 -0.5 316,346 + MPMX19_04020 0.47 -0.6 316,346 + MPMX19_04020 0.47 -0.3 316,346 + MPMX19_04020 0.47 -1.4 316,346 + MPMX19_04020 0.47 +0.3 316,346 + MPMX19_04020 0.47 +0.0 316,347 - MPMX19_04020 0.47 +0.5 316,347 - MPMX19_04020 0.47 -0.7 316,347 - MPMX19_04020 0.47 +0.4 316,347 - MPMX19_04020 0.47 -1.3 316,347 - MPMX19_04020 0.47 +0.1 316,347 - MPMX19_04020 0.47 -0.2 316,347 - MPMX19_04020 0.47 +0.5 316,347 - MPMX19_04020 0.47 -0.2 316,452 + MPMX19_04020 0.58 -0.3 316,452 + MPMX19_04020 0.58 -3.1 316,452 + MPMX19_04020 0.58 -1.2 316,453 - MPMX19_04020 0.58 +0.5 316,453 - MPMX19_04020 0.58 -1.1 316,454 + MPMX19_04020 0.59 +0.1 316,454 + MPMX19_04020 0.59 +0.4 316,454 + MPMX19_04020 0.59 +0.8 316,454 + MPMX19_04020 0.59 +0.2 316,454 + MPMX19_04020 0.59 -0.6 316,571 + MPMX19_04020 0.71 -1.3 316,571 + MPMX19_04020 0.71 -0.5 316,571 + MPMX19_04020 0.71 -0.4 316,572 - MPMX19_04020 0.72 -1.0 316,869 + +0.5 316,876 + -0.7 316,876 + -0.1 316,876 + +1.1 316,877 - -1.7 316,877 - +0.3 316,909 + +0.5 316,909 + -1.5 316,909 + -0.3 316,909 + -0.9 316,909 + +0.7 316,909 + -1.0 316,909 + -0.5 316,909 + +0.5 316,909 + -0.2 316,909 + +0.5 316,909 + +0.3 316,909 + -1.9 316,909 + -0.6 316,909 + -1.1 316,909 + -1.3 316,909 + -1.7 316,909 + +1.4 316,909 + +0.0 316,909 + -2.6 316,909 + +1.0 316,909 + -0.0 316,909 + -1.2 316,910 - +0.9 316,910 - +0.1 316,910 - +0.7 316,910 - +0.1 316,910 - -1.5 316,910 - -0.0 316,910 - -0.3 316,910 - +0.7 316,910 - -1.0 316,910 - -1.0 316,910 - -1.2 316,910 - -0.7 316,910 - -0.1 316,910 - -1.0 316,910 - -0.4 316,910 - +1.5 316,910 - -0.5 316,910 - -1.7 316,910 - -0.8 316,910 - -0.5 316,910 - -2.1 316,910 - +1.5 316,910 - +0.3 316,910 - +0.1 316,910 - -1.9 316,910 - -3.2 316,910 - -0.5 316,910 - -1.9 317,152 + MPMX19_04021 0.33 -1.1 317,152 + MPMX19_04021 0.33 -0.4 317,152 + MPMX19_04021 0.33 -0.9 317,152 + MPMX19_04021 0.33 -0.7 317,152 + MPMX19_04021 0.33 +0.1 317,152 + MPMX19_04021 0.33 -1.0 317,152 + MPMX19_04021 0.33 -0.5 317,153 - MPMX19_04021 0.33 -0.7 317,153 - MPMX19_04021 0.33 -0.6 317,153 - MPMX19_04021 0.33 +1.1 317,153 - MPMX19_04021 0.33 -1.7 317,153 - MPMX19_04021 0.33 +0.2 317,153 - MPMX19_04021 0.33 +0.5 317,326 + MPMX19_04021 0.51 -0.7 317,326 + MPMX19_04021 0.51 -0.2 317,326 + MPMX19_04021 0.51 +0.0 317,326 + MPMX19_04021 0.51 -1.3 317,326 + MPMX19_04021 0.51 -0.5 317,326 + MPMX19_04021 0.51 +0.7 317,326 + MPMX19_04021 0.51 +0.7 317,326 + MPMX19_04021 0.51 -1.5 317,326 + MPMX19_04021 0.51 -0.5 317,326 + MPMX19_04021 0.51 -0.2 317,326 + MPMX19_04021 0.51 -0.4 317,327 - MPMX19_04021 0.51 +1.5 317,327 - MPMX19_04021 0.51 -0.9 317,327 - MPMX19_04021 0.51 -0.4 317,327 - MPMX19_04021 0.51 -1.6 317,584 + MPMX19_04021 0.78 -0.0 317,584 + MPMX19_04021 0.78 -0.0 317,584 + MPMX19_04021 0.78 -0.5 317,584 + MPMX19_04021 0.78 +0.5 317,584 + MPMX19_04021 0.78 -0.3 317,585 - MPMX19_04021 0.79 +0.3 317,585 - MPMX19_04021 0.79 -1.4 317,585 - MPMX19_04021 0.79 -0.6 317,585 - MPMX19_04021 0.79 +0.5 317,776 + -1.9 317,776 + -1.4 317,776 + -1.4 317,776 + +1.4 317,776 + -0.4 317,777 - -1.0 317,777 - -0.3 317,777 - -0.3 317,777 - -0.5 317,777 - -1.6 317,777 - +0.0 317,777 - -0.2 317,777 - +0.1 317,777 - -2.3 317,777 - +1.3
Or see this region's nucleotide sequence