Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04003

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04002 and MPMX19_04003 are separated by 55 nucleotidesMPMX19_04003 and MPMX19_04004 overlap by 4 nucleotides MPMX19_04002: MPMX19_04002 - HTH-type transcriptional regulator MurR, at 297,266 to 298,159 _04002 MPMX19_04003: MPMX19_04003 - D-alanine aminotransferase, at 298,215 to 299,060 _04003 MPMX19_04004: MPMX19_04004 - Glutathione import ATP-binding protein GsiA, at 299,057 to 300,970 _04004 Position (kb) 298 299 300Strain fitness (log2 ratio) -2 -1 0 1 2 3at 297.215 kb on + strandat 297.215 kb on + strandat 297.229 kb on + strandat 297.229 kb on + strandat 297.305 kb on - strandat 297.368 kb on + strand, within MPMX19_04002at 297.368 kb on + strand, within MPMX19_04002at 297.368 kb on + strand, within MPMX19_04002at 297.368 kb on + strand, within MPMX19_04002at 297.369 kb on - strand, within MPMX19_04002at 297.447 kb on - strand, within MPMX19_04002at 297.464 kb on + strand, within MPMX19_04002at 297.464 kb on + strand, within MPMX19_04002at 297.464 kb on + strand, within MPMX19_04002at 297.464 kb on + strand, within MPMX19_04002at 297.465 kb on - strand, within MPMX19_04002at 297.716 kb on + strand, within MPMX19_04002at 297.716 kb on + strand, within MPMX19_04002at 297.716 kb on + strand, within MPMX19_04002at 297.716 kb on + strand, within MPMX19_04002at 297.716 kb on + strand, within MPMX19_04002at 297.717 kb on - strand, within MPMX19_04002at 297.751 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.752 kb on + strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 297.753 kb on - strand, within MPMX19_04002at 298.118 kb on + strandat 298.118 kb on + strandat 298.118 kb on + strandat 298.118 kb on + strandat 298.227 kb on + strandat 298.227 kb on + strandat 298.228 kb on - strandat 298.228 kb on - strandat 298.242 kb on + strandat 298.242 kb on + strandat 298.242 kb on + strandat 298.243 kb on - strandat 298.243 kb on - strandat 298.243 kb on - strandat 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.308 kb on + strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.309 kb on - strand, within MPMX19_04003at 298.326 kb on + strand, within MPMX19_04003at 298.326 kb on + strand, within MPMX19_04003at 298.326 kb on + strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.327 kb on - strand, within MPMX19_04003at 298.482 kb on + strand, within MPMX19_04003at 298.482 kb on + strand, within MPMX19_04003at 298.482 kb on + strand, within MPMX19_04003at 298.483 kb on - strand, within MPMX19_04003at 298.483 kb on - strand, within MPMX19_04003at 298.483 kb on - strand, within MPMX19_04003at 298.483 kb on - strand, within MPMX19_04003at 298.483 kb on - strand, within MPMX19_04003at 298.483 kb on - strand, within MPMX19_04003at 298.483 kb on - strand, within MPMX19_04003at 298.483 kb on - strand, within MPMX19_04003at 298.483 kb on - strand, within MPMX19_04003at 299.270 kb on + strand, within MPMX19_04004at 299.270 kb on + strand, within MPMX19_04004at 299.270 kb on + strand, within MPMX19_04004at 299.270 kb on + strand, within MPMX19_04004at 299.270 kb on + strand, within MPMX19_04004at 299.271 kb on - strand, within MPMX19_04004at 299.271 kb on - strand, within MPMX19_04004at 299.858 kb on + strand, within MPMX19_04004at 299.858 kb on + strand, within MPMX19_04004at 299.858 kb on + strand, within MPMX19_04004at 299.858 kb on + strand, within MPMX19_04004at 299.858 kb on + strand, within MPMX19_04004at 299.858 kb on + strand, within MPMX19_04004at 299.858 kb on + strand, within MPMX19_04004at 299.859 kb on - strand, within MPMX19_04004at 299.859 kb on - strand, within MPMX19_04004at 299.859 kb on - strand, within MPMX19_04004at 299.859 kb on - strand, within MPMX19_04004at 299.859 kb on - strand, within MPMX19_04004at 299.859 kb on - strand, within MPMX19_04004at 299.859 kb on - strand, within MPMX19_04004

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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297,215 + +0.0
297,215 + +0.4
297,229 + -1.0
297,229 + -0.7
297,305 - -2.4
297,368 + MPMX19_04002 0.11 -1.3
297,368 + MPMX19_04002 0.11 -1.8
297,368 + MPMX19_04002 0.11 +1.3
297,368 + MPMX19_04002 0.11 -0.9
297,369 - MPMX19_04002 0.12 +0.0
297,447 - MPMX19_04002 0.20 -1.7
297,464 + MPMX19_04002 0.22 -1.0
297,464 + MPMX19_04002 0.22 -0.9
297,464 + MPMX19_04002 0.22 +0.7
297,464 + MPMX19_04002 0.22 -0.2
297,465 - MPMX19_04002 0.22 -0.9
297,716 + MPMX19_04002 0.50 -0.4
297,716 + MPMX19_04002 0.50 -1.3
297,716 + MPMX19_04002 0.50 +0.3
297,716 + MPMX19_04002 0.50 -1.9
297,716 + MPMX19_04002 0.50 -0.8
297,717 - MPMX19_04002 0.50 +1.0
297,751 + MPMX19_04002 0.54 +0.4
297,752 + MPMX19_04002 0.54 +0.1
297,752 + MPMX19_04002 0.54 -0.3
297,752 + MPMX19_04002 0.54 +0.2
297,752 + MPMX19_04002 0.54 -1.2
297,752 + MPMX19_04002 0.54 +0.5
297,752 + MPMX19_04002 0.54 -0.2
297,752 + MPMX19_04002 0.54 -2.4
297,752 + MPMX19_04002 0.54 -0.8
297,753 - MPMX19_04002 0.54 -0.0
297,753 - MPMX19_04002 0.54 -0.8
297,753 - MPMX19_04002 0.54 -0.7
297,753 - MPMX19_04002 0.54 -0.5
297,753 - MPMX19_04002 0.54 +1.1
297,753 - MPMX19_04002 0.54 -0.9
297,753 - MPMX19_04002 0.54 -1.6
298,118 + +1.1
298,118 + -1.4
298,118 + -2.3
298,118 + +0.2
298,227 + -1.0
298,227 + -1.0
298,228 - -0.9
298,228 - -0.7
298,242 + -0.6
298,242 + -0.1
298,242 + -0.2
298,243 - +0.9
298,243 - +2.1
298,243 - -0.2
298,308 + MPMX19_04003 0.11 -0.5
298,308 + MPMX19_04003 0.11 -1.2
298,308 + MPMX19_04003 0.11 -1.2
298,308 + MPMX19_04003 0.11 -0.2
298,308 + MPMX19_04003 0.11 -1.8
298,308 + MPMX19_04003 0.11 -0.3
298,308 + MPMX19_04003 0.11 -1.5
298,308 + MPMX19_04003 0.11 -0.9
298,308 + MPMX19_04003 0.11 -0.7
298,308 + MPMX19_04003 0.11 -2.4
298,308 + MPMX19_04003 0.11 -1.6
298,308 + MPMX19_04003 0.11 +0.0
298,308 + MPMX19_04003 0.11 -0.5
298,308 + MPMX19_04003 0.11 -1.6
298,309 - MPMX19_04003 0.11 -2.5
298,309 - MPMX19_04003 0.11 -1.1
298,309 - MPMX19_04003 0.11 +0.1
298,309 - MPMX19_04003 0.11 -0.5
298,309 - MPMX19_04003 0.11 +0.4
298,309 - MPMX19_04003 0.11 -1.1
298,309 - MPMX19_04003 0.11 -0.6
298,309 - MPMX19_04003 0.11 +0.5
298,309 - MPMX19_04003 0.11 -1.0
298,309 - MPMX19_04003 0.11 +0.4
298,309 - MPMX19_04003 0.11 +0.4
298,309 - MPMX19_04003 0.11 +0.3
298,309 - MPMX19_04003 0.11 -1.0
298,326 + MPMX19_04003 0.13 -1.2
298,326 + MPMX19_04003 0.13 +3.1
298,326 + MPMX19_04003 0.13 +0.7
298,327 - MPMX19_04003 0.13 -1.2
298,327 - MPMX19_04003 0.13 +0.2
298,327 - MPMX19_04003 0.13 +1.1
298,327 - MPMX19_04003 0.13 -1.3
298,327 - MPMX19_04003 0.13 +0.1
298,327 - MPMX19_04003 0.13 -0.2
298,327 - MPMX19_04003 0.13 +0.5
298,327 - MPMX19_04003 0.13 +0.9
298,327 - MPMX19_04003 0.13 -1.6
298,327 - MPMX19_04003 0.13 -0.6
298,327 - MPMX19_04003 0.13 -0.3
298,327 - MPMX19_04003 0.13 -1.5
298,327 - MPMX19_04003 0.13 -2.3
298,327 - MPMX19_04003 0.13 -0.2
298,327 - MPMX19_04003 0.13 -0.5
298,482 + MPMX19_04003 0.32 -0.7
298,482 + MPMX19_04003 0.32 -0.9
298,482 + MPMX19_04003 0.32 -0.7
298,483 - MPMX19_04003 0.32 +0.8
298,483 - MPMX19_04003 0.32 +0.5
298,483 - MPMX19_04003 0.32 -0.3
298,483 - MPMX19_04003 0.32 -0.9
298,483 - MPMX19_04003 0.32 -0.1
298,483 - MPMX19_04003 0.32 +0.1
298,483 - MPMX19_04003 0.32 +0.1
298,483 - MPMX19_04003 0.32 -0.0
298,483 - MPMX19_04003 0.32 -1.9
299,270 + MPMX19_04004 0.11 -0.3
299,270 + MPMX19_04004 0.11 -0.0
299,270 + MPMX19_04004 0.11 +1.1
299,270 + MPMX19_04004 0.11 -1.6
299,270 + MPMX19_04004 0.11 +0.9
299,271 - MPMX19_04004 0.11 -0.2
299,271 - MPMX19_04004 0.11 -0.5
299,858 + MPMX19_04004 0.42 -1.7
299,858 + MPMX19_04004 0.42 +0.1
299,858 + MPMX19_04004 0.42 -0.4
299,858 + MPMX19_04004 0.42 -0.0
299,858 + MPMX19_04004 0.42 +0.3
299,858 + MPMX19_04004 0.42 -1.3
299,858 + MPMX19_04004 0.42 +1.1
299,859 - MPMX19_04004 0.42 -0.6
299,859 - MPMX19_04004 0.42 -0.6
299,859 - MPMX19_04004 0.42 -0.6
299,859 - MPMX19_04004 0.42 -0.2
299,859 - MPMX19_04004 0.42 -0.0
299,859 - MPMX19_04004 0.42 +1.0
299,859 - MPMX19_04004 0.42 -1.5

Or see this region's nucleotide sequence