Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03980 and MPMX19_03981 are separated by 49 nucleotides MPMX19_03981 and MPMX19_03982 are separated by 282 nucleotides MPMX19_03982 and MPMX19_03983 are separated by 394 nucleotides
MPMX19_03980: MPMX19_03980 - Sensor protein FixL, at 271,353 to 273,155
_03980
MPMX19_03981: MPMX19_03981 - hypothetical protein, at 273,205 to 273,441
_03981
MPMX19_03982: MPMX19_03982 - tRNA-Ser, at 273,724 to 273,816
_03982
MPMX19_03983: MPMX19_03983 - hypothetical protein, at 274,211 to 274,669
_03983
Position (kb) 273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 272.790 kb on + strand, within MPMX19_03980 at 272.790 kb on + strand, within MPMX19_03980 at 272.790 kb on + strand, within MPMX19_03980 at 272.791 kb on - strand, within MPMX19_03980 at 272.791 kb on - strand, within MPMX19_03980 at 272.791 kb on - strand, within MPMX19_03980 at 273.539 kb on + strand at 273.540 kb on - strand at 273.540 kb on - strand at 273.540 kb on - strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.559 kb on + strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.560 kb on - strand at 273.647 kb on + strand at 273.647 kb on + strand at 273.856 kb on - strand at 273.856 kb on - strand at 273.898 kb on + strand at 273.898 kb on + strand at 273.898 kb on + strand at 273.899 kb on - strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.974 kb on + strand at 273.975 kb on - strand at 273.995 kb on + strand at 273.995 kb on + strand at 273.995 kb on + strand at 273.995 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.027 kb on + strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.028 kb on - strand at 274.082 kb on + strand at 274.082 kb on + strand at 274.082 kb on + strand at 274.082 kb on + strand at 274.083 kb on - strand at 274.083 kb on - strand at 274.083 kb on - strand at 274.083 kb on - strand at 274.201 kb on - strand at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.337 kb on + strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.338 kb on - strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.360 kb on + strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.361 kb on - strand, within MPMX19_03983 at 274.407 kb on + strand, within MPMX19_03983 at 274.407 kb on + strand, within MPMX19_03983 at 274.408 kb on - strand, within MPMX19_03983 at 274.408 kb on - strand, within MPMX19_03983 at 274.416 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.431 kb on + strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.432 kb on - strand, within MPMX19_03983 at 274.461 kb on + strand, within MPMX19_03983 at 274.461 kb on + strand, within MPMX19_03983 at 274.461 kb on + strand, within MPMX19_03983 at 274.461 kb on + strand, within MPMX19_03983 at 274.462 kb on - strand, within MPMX19_03983 at 274.462 kb on - strand, within MPMX19_03983 at 274.462 kb on - strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.490 kb on + strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.491 kb on - strand, within MPMX19_03983 at 274.547 kb on - strand, within MPMX19_03983 at 274.547 kb on - strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.586 kb on + strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.587 kb on - strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.588 kb on + strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.589 kb on - strand, within MPMX19_03983 at 274.635 kb on + strand at 274.635 kb on + strand at 274.636 kb on - strand at 274.636 kb on - strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.667 kb on + strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.668 kb on - strand at 274.704 kb on + strand at 274.705 kb on - strand at 274.712 kb on + strand at 274.713 kb on - strand at 274.734 kb on + strand at 274.734 kb on + strand at 274.734 kb on + strand at 274.735 kb on - strand at 274.735 kb on - strand at 274.782 kb on - strand at 274.782 kb on - strand at 274.782 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 272,790 + MPMX19_03980 0.80 -1.9 272,790 + MPMX19_03980 0.80 -0.7 272,790 + MPMX19_03980 0.80 -1.0 272,791 - MPMX19_03980 0.80 +0.4 272,791 - MPMX19_03980 0.80 -2.2 272,791 - MPMX19_03980 0.80 +0.3 273,539 + +1.1 273,540 - +0.1 273,540 - -1.2 273,540 - -0.7 273,559 + +1.4 273,559 + -1.2 273,559 + -1.0 273,559 + -1.1 273,559 + -1.8 273,559 + -1.4 273,559 + -0.0 273,560 - -0.9 273,560 - -0.4 273,560 - -0.4 273,560 - -1.4 273,560 - -1.7 273,560 - -1.6 273,560 - +0.5 273,560 - -0.3 273,560 - -1.1 273,560 - +0.1 273,647 + +0.0 273,647 + -0.0 273,856 - +1.8 273,856 - -1.4 273,898 + -1.3 273,898 + +0.8 273,898 + -2.0 273,899 - +1.1 273,974 + -0.9 273,974 + +0.3 273,974 + -0.9 273,974 + -2.4 273,974 + -1.4 273,975 - -1.5 273,995 + +0.4 273,995 + -0.4 273,995 + -3.7 273,995 + -1.4 274,027 + -2.9 274,027 + +1.5 274,027 + +0.7 274,027 + -0.8 274,027 + -1.7 274,028 - -0.9 274,028 - -0.4 274,028 - -1.0 274,028 - -0.8 274,028 - -0.9 274,028 - +0.0 274,082 + -0.6 274,082 + -0.7 274,082 + +0.7 274,082 + +0.4 274,083 - +0.5 274,083 - -0.9 274,083 - -0.4 274,083 - -2.8 274,201 - -0.4 274,337 + MPMX19_03983 0.27 -0.2 274,337 + MPMX19_03983 0.27 -0.9 274,337 + MPMX19_03983 0.27 -1.6 274,337 + MPMX19_03983 0.27 -0.4 274,337 + MPMX19_03983 0.27 +0.6 274,337 + MPMX19_03983 0.27 -0.2 274,337 + MPMX19_03983 0.27 -0.7 274,337 + MPMX19_03983 0.27 -2.1 274,338 - MPMX19_03983 0.28 -0.9 274,338 - MPMX19_03983 0.28 -1.2 274,338 - MPMX19_03983 0.28 +0.3 274,338 - MPMX19_03983 0.28 +0.3 274,338 - MPMX19_03983 0.28 -0.4 274,338 - MPMX19_03983 0.28 +1.6 274,338 - MPMX19_03983 0.28 -0.2 274,360 + MPMX19_03983 0.32 -0.2 274,360 + MPMX19_03983 0.32 +0.1 274,360 + MPMX19_03983 0.32 -0.9 274,360 + MPMX19_03983 0.32 -0.7 274,360 + MPMX19_03983 0.32 -1.4 274,360 + MPMX19_03983 0.32 +0.8 274,360 + MPMX19_03983 0.32 -1.1 274,360 + MPMX19_03983 0.32 -0.7 274,360 + MPMX19_03983 0.32 -0.3 274,360 + MPMX19_03983 0.32 +0.4 274,361 - MPMX19_03983 0.33 +0.3 274,361 - MPMX19_03983 0.33 -0.9 274,361 - MPMX19_03983 0.33 +0.3 274,361 - MPMX19_03983 0.33 +1.7 274,361 - MPMX19_03983 0.33 +0.2 274,361 - MPMX19_03983 0.33 -1.2 274,361 - MPMX19_03983 0.33 -0.1 274,407 + MPMX19_03983 0.43 -0.4 274,407 + MPMX19_03983 0.43 -0.8 274,408 - MPMX19_03983 0.43 +0.6 274,408 - MPMX19_03983 0.43 +0.1 274,416 + MPMX19_03983 0.45 +0.6 274,431 + MPMX19_03983 0.48 -0.4 274,431 + MPMX19_03983 0.48 +0.3 274,431 + MPMX19_03983 0.48 -1.6 274,431 + MPMX19_03983 0.48 -0.5 274,431 + MPMX19_03983 0.48 -0.9 274,431 + MPMX19_03983 0.48 +0.1 274,431 + MPMX19_03983 0.48 -1.4 274,432 - MPMX19_03983 0.48 -1.2 274,432 - MPMX19_03983 0.48 -0.0 274,432 - MPMX19_03983 0.48 -0.1 274,432 - MPMX19_03983 0.48 -1.2 274,432 - MPMX19_03983 0.48 -1.8 274,432 - MPMX19_03983 0.48 -2.7 274,432 - MPMX19_03983 0.48 -1.0 274,432 - MPMX19_03983 0.48 -0.0 274,432 - MPMX19_03983 0.48 -0.0 274,432 - MPMX19_03983 0.48 -0.8 274,461 + MPMX19_03983 0.54 -1.3 274,461 + MPMX19_03983 0.54 -0.2 274,461 + MPMX19_03983 0.54 -0.4 274,461 + MPMX19_03983 0.54 -0.3 274,462 - MPMX19_03983 0.55 -1.4 274,462 - MPMX19_03983 0.55 -0.3 274,462 - MPMX19_03983 0.55 +0.3 274,490 + MPMX19_03983 0.61 -0.2 274,490 + MPMX19_03983 0.61 -0.4 274,490 + MPMX19_03983 0.61 -2.3 274,490 + MPMX19_03983 0.61 +0.7 274,490 + MPMX19_03983 0.61 -0.4 274,490 + MPMX19_03983 0.61 -0.7 274,491 - MPMX19_03983 0.61 -0.7 274,491 - MPMX19_03983 0.61 -0.4 274,491 - MPMX19_03983 0.61 -0.2 274,491 - MPMX19_03983 0.61 -0.4 274,491 - MPMX19_03983 0.61 -0.7 274,491 - MPMX19_03983 0.61 -2.2 274,547 - MPMX19_03983 0.73 +0.3 274,547 - MPMX19_03983 0.73 -0.7 274,586 + MPMX19_03983 0.82 +0.5 274,586 + MPMX19_03983 0.82 -0.2 274,586 + MPMX19_03983 0.82 +0.0 274,586 + MPMX19_03983 0.82 +0.1 274,586 + MPMX19_03983 0.82 +1.1 274,586 + MPMX19_03983 0.82 +0.1 274,586 + MPMX19_03983 0.82 -1.3 274,586 + MPMX19_03983 0.82 -1.2 274,586 + MPMX19_03983 0.82 -0.9 274,586 + MPMX19_03983 0.82 +0.5 274,586 + MPMX19_03983 0.82 -1.7 274,586 + MPMX19_03983 0.82 -1.5 274,586 + MPMX19_03983 0.82 -1.2 274,586 + MPMX19_03983 0.82 -1.4 274,587 - MPMX19_03983 0.82 -1.6 274,587 - MPMX19_03983 0.82 -1.2 274,587 - MPMX19_03983 0.82 -0.4 274,587 - MPMX19_03983 0.82 -0.4 274,587 - MPMX19_03983 0.82 +0.2 274,587 - MPMX19_03983 0.82 -2.8 274,587 - MPMX19_03983 0.82 +0.3 274,587 - MPMX19_03983 0.82 +0.1 274,588 + MPMX19_03983 0.82 -1.3 274,588 + MPMX19_03983 0.82 -0.2 274,588 + MPMX19_03983 0.82 +0.3 274,588 + MPMX19_03983 0.82 -1.9 274,588 + MPMX19_03983 0.82 -1.8 274,588 + MPMX19_03983 0.82 -0.9 274,588 + MPMX19_03983 0.82 -0.9 274,588 + MPMX19_03983 0.82 +2.1 274,588 + MPMX19_03983 0.82 +1.3 274,588 + MPMX19_03983 0.82 +2.1 274,588 + MPMX19_03983 0.82 -2.1 274,588 + MPMX19_03983 0.82 -1.2 274,588 + MPMX19_03983 0.82 -0.9 274,588 + MPMX19_03983 0.82 -2.0 274,588 + MPMX19_03983 0.82 +0.3 274,588 + MPMX19_03983 0.82 -1.9 274,588 + MPMX19_03983 0.82 +1.1 274,588 + MPMX19_03983 0.82 -0.2 274,588 + MPMX19_03983 0.82 -0.6 274,588 + MPMX19_03983 0.82 +2.0 274,588 + MPMX19_03983 0.82 +0.7 274,588 + MPMX19_03983 0.82 +1.7 274,588 + MPMX19_03983 0.82 -0.0 274,588 + MPMX19_03983 0.82 -0.4 274,588 + MPMX19_03983 0.82 -0.2 274,589 - MPMX19_03983 0.82 -1.4 274,589 - MPMX19_03983 0.82 -0.6 274,589 - MPMX19_03983 0.82 -0.8 274,589 - MPMX19_03983 0.82 -0.8 274,589 - MPMX19_03983 0.82 -1.2 274,589 - MPMX19_03983 0.82 -0.2 274,589 - MPMX19_03983 0.82 -0.6 274,589 - MPMX19_03983 0.82 -0.9 274,589 - MPMX19_03983 0.82 -0.7 274,589 - MPMX19_03983 0.82 -0.2 274,589 - MPMX19_03983 0.82 -0.9 274,589 - MPMX19_03983 0.82 -0.9 274,589 - MPMX19_03983 0.82 -0.9 274,589 - MPMX19_03983 0.82 +0.0 274,589 - MPMX19_03983 0.82 -0.7 274,589 - MPMX19_03983 0.82 -0.7 274,589 - MPMX19_03983 0.82 +1.4 274,589 - MPMX19_03983 0.82 -1.2 274,635 + -0.2 274,635 + -1.9 274,636 - +1.1 274,636 - -1.3 274,667 + -1.3 274,667 + -1.2 274,667 + -1.2 274,667 + +0.1 274,667 + +0.3 274,667 + -0.4 274,667 + +2.7 274,667 + -1.0 274,668 - -0.1 274,668 - -0.2 274,668 - -0.7 274,668 - -1.9 274,668 - -1.8 274,668 - +0.1 274,668 - -0.9 274,668 - +0.0 274,668 - -1.2 274,668 - +0.4 274,704 + +1.6 274,705 - -0.2 274,712 + -0.7 274,713 - -0.7 274,734 + -0.7 274,734 + -0.4 274,734 + -2.1 274,735 - +1.1 274,735 - -1.1 274,782 - -0.4 274,782 - +0.6 274,782 - -0.4
Or see this region's nucleotide sequence