Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03981

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03980 and MPMX19_03981 are separated by 49 nucleotidesMPMX19_03981 and MPMX19_03982 are separated by 282 nucleotidesMPMX19_03982 and MPMX19_03983 are separated by 394 nucleotides MPMX19_03980: MPMX19_03980 - Sensor protein FixL, at 271,353 to 273,155 _03980 MPMX19_03981: MPMX19_03981 - hypothetical protein, at 273,205 to 273,441 _03981 MPMX19_03982: MPMX19_03982 - tRNA-Ser, at 273,724 to 273,816 _03982 MPMX19_03983: MPMX19_03983 - hypothetical protein, at 274,211 to 274,669 _03983 Position (kb) 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 272.226 kb on + strand, within MPMX19_03980at 272.226 kb on + strand, within MPMX19_03980at 272.226 kb on + strand, within MPMX19_03980at 272.226 kb on + strand, within MPMX19_03980at 272.226 kb on + strand, within MPMX19_03980at 272.226 kb on + strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.227 kb on - strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.634 kb on + strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.635 kb on - strand, within MPMX19_03980at 272.637 kb on - strand, within MPMX19_03980at 272.637 kb on - strand, within MPMX19_03980at 272.637 kb on - strand, within MPMX19_03980at 272.790 kb on + strand, within MPMX19_03980at 272.790 kb on + strand, within MPMX19_03980at 272.790 kb on + strand, within MPMX19_03980at 272.791 kb on - strand, within MPMX19_03980at 272.791 kb on - strand, within MPMX19_03980at 272.791 kb on - strand, within MPMX19_03980at 273.539 kb on + strandat 273.540 kb on - strandat 273.540 kb on - strandat 273.540 kb on - strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.559 kb on + strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.560 kb on - strandat 273.647 kb on + strandat 273.647 kb on + strandat 273.856 kb on - strandat 273.856 kb on - strandat 273.898 kb on + strandat 273.898 kb on + strandat 273.898 kb on + strandat 273.899 kb on - strandat 273.974 kb on + strandat 273.974 kb on + strandat 273.974 kb on + strandat 273.974 kb on + strandat 273.974 kb on + strandat 273.975 kb on - strandat 273.995 kb on + strandat 273.995 kb on + strandat 273.995 kb on + strandat 273.995 kb on + strandat 274.027 kb on + strandat 274.027 kb on + strandat 274.027 kb on + strandat 274.027 kb on + strandat 274.027 kb on + strandat 274.028 kb on - strandat 274.028 kb on - strandat 274.028 kb on - strandat 274.028 kb on - strandat 274.028 kb on - strandat 274.028 kb on - strandat 274.082 kb on + strandat 274.082 kb on + strandat 274.082 kb on + strandat 274.082 kb on + strandat 274.083 kb on - strandat 274.083 kb on - strandat 274.083 kb on - strandat 274.083 kb on - strandat 274.201 kb on - strandat 274.337 kb on + strand, within MPMX19_03983at 274.337 kb on + strand, within MPMX19_03983at 274.337 kb on + strand, within MPMX19_03983at 274.337 kb on + strand, within MPMX19_03983at 274.337 kb on + strand, within MPMX19_03983at 274.337 kb on + strand, within MPMX19_03983at 274.337 kb on + strand, within MPMX19_03983at 274.337 kb on + strand, within MPMX19_03983at 274.338 kb on - strand, within MPMX19_03983at 274.338 kb on - strand, within MPMX19_03983at 274.338 kb on - strand, within MPMX19_03983at 274.338 kb on - strand, within MPMX19_03983at 274.338 kb on - strand, within MPMX19_03983at 274.338 kb on - strand, within MPMX19_03983at 274.338 kb on - strand, within MPMX19_03983at 274.360 kb on + strand, within MPMX19_03983at 274.360 kb on + strand, within MPMX19_03983at 274.360 kb on + strand, within MPMX19_03983at 274.360 kb on + strand, within MPMX19_03983at 274.360 kb on + strand, within MPMX19_03983at 274.360 kb on + strand, within MPMX19_03983at 274.360 kb on + strand, within MPMX19_03983at 274.360 kb on + strand, within MPMX19_03983at 274.360 kb on + strand, within MPMX19_03983at 274.360 kb on + strand, within MPMX19_03983at 274.361 kb on - strand, within MPMX19_03983at 274.361 kb on - strand, within MPMX19_03983at 274.361 kb on - strand, within MPMX19_03983at 274.361 kb on - strand, within MPMX19_03983at 274.361 kb on - strand, within MPMX19_03983at 274.361 kb on - strand, within MPMX19_03983at 274.361 kb on - strand, within MPMX19_03983at 274.407 kb on + strand, within MPMX19_03983at 274.407 kb on + strand, within MPMX19_03983at 274.408 kb on - strand, within MPMX19_03983at 274.408 kb on - strand, within MPMX19_03983at 274.416 kb on + strand, within MPMX19_03983at 274.431 kb on + strand, within MPMX19_03983at 274.431 kb on + strand, within MPMX19_03983at 274.431 kb on + strand, within MPMX19_03983at 274.431 kb on + strand, within MPMX19_03983at 274.431 kb on + strand, within MPMX19_03983at 274.431 kb on + strand, within MPMX19_03983at 274.431 kb on + strand, within MPMX19_03983at 274.432 kb on - strand, within MPMX19_03983at 274.432 kb on - strand, within MPMX19_03983at 274.432 kb on - strand, within MPMX19_03983at 274.432 kb on - strand, within MPMX19_03983at 274.432 kb on - strand, within MPMX19_03983at 274.432 kb on - strand, within MPMX19_03983at 274.432 kb on - strand, within MPMX19_03983at 274.432 kb on - strand, within MPMX19_03983at 274.432 kb on - strand, within MPMX19_03983at 274.432 kb on - strand, within MPMX19_03983

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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272,226 + MPMX19_03980 0.48 -1.6
272,226 + MPMX19_03980 0.48 -0.2
272,226 + MPMX19_03980 0.48 -0.2
272,226 + MPMX19_03980 0.48 -0.7
272,226 + MPMX19_03980 0.48 +0.8
272,226 + MPMX19_03980 0.48 -1.1
272,227 - MPMX19_03980 0.48 -1.2
272,227 - MPMX19_03980 0.48 -0.2
272,227 - MPMX19_03980 0.48 +0.6
272,227 - MPMX19_03980 0.48 +0.1
272,227 - MPMX19_03980 0.48 -1.8
272,227 - MPMX19_03980 0.48 +0.4
272,227 - MPMX19_03980 0.48 -0.7
272,634 + MPMX19_03980 0.71 +1.0
272,634 + MPMX19_03980 0.71 -0.2
272,634 + MPMX19_03980 0.71 -0.2
272,634 + MPMX19_03980 0.71 -0.4
272,634 + MPMX19_03980 0.71 -1.2
272,634 + MPMX19_03980 0.71 -0.4
272,634 + MPMX19_03980 0.71 +0.1
272,634 + MPMX19_03980 0.71 -1.0
272,634 + MPMX19_03980 0.71 +0.1
272,634 + MPMX19_03980 0.71 -1.0
272,634 + MPMX19_03980 0.71 +1.5
272,634 + MPMX19_03980 0.71 -2.2
272,635 - MPMX19_03980 0.71 -0.4
272,635 - MPMX19_03980 0.71 -1.2
272,635 - MPMX19_03980 0.71 -0.9
272,635 - MPMX19_03980 0.71 +0.1
272,635 - MPMX19_03980 0.71 -0.6
272,635 - MPMX19_03980 0.71 +0.3
272,635 - MPMX19_03980 0.71 +0.8
272,635 - MPMX19_03980 0.71 -1.8
272,635 - MPMX19_03980 0.71 +0.4
272,635 - MPMX19_03980 0.71 +1.1
272,635 - MPMX19_03980 0.71 -0.4
272,635 - MPMX19_03980 0.71 -0.3
272,637 - MPMX19_03980 0.71 -1.2
272,637 - MPMX19_03980 0.71 +0.0
272,637 - MPMX19_03980 0.71 -3.1
272,790 + MPMX19_03980 0.80 -1.9
272,790 + MPMX19_03980 0.80 -0.7
272,790 + MPMX19_03980 0.80 -1.0
272,791 - MPMX19_03980 0.80 +0.4
272,791 - MPMX19_03980 0.80 -2.2
272,791 - MPMX19_03980 0.80 +0.3
273,539 + +1.1
273,540 - +0.1
273,540 - -1.2
273,540 - -0.7
273,559 + +1.4
273,559 + -1.2
273,559 + -1.0
273,559 + -1.1
273,559 + -1.8
273,559 + -1.4
273,559 + -0.0
273,560 - -0.9
273,560 - -0.4
273,560 - -0.4
273,560 - -1.4
273,560 - -1.7
273,560 - -1.6
273,560 - +0.5
273,560 - -0.3
273,560 - -1.1
273,560 - +0.1
273,647 + +0.0
273,647 + -0.0
273,856 - +1.8
273,856 - -1.4
273,898 + -1.3
273,898 + +0.8
273,898 + -2.0
273,899 - +1.1
273,974 + -0.9
273,974 + +0.3
273,974 + -0.9
273,974 + -2.4
273,974 + -1.4
273,975 - -1.5
273,995 + +0.4
273,995 + -0.4
273,995 + -3.7
273,995 + -1.4
274,027 + -2.9
274,027 + +1.5
274,027 + +0.7
274,027 + -0.8
274,027 + -1.7
274,028 - -0.9
274,028 - -0.4
274,028 - -1.0
274,028 - -0.8
274,028 - -0.9
274,028 - +0.0
274,082 + -0.6
274,082 + -0.7
274,082 + +0.7
274,082 + +0.4
274,083 - +0.5
274,083 - -0.9
274,083 - -0.4
274,083 - -2.8
274,201 - -0.4
274,337 + MPMX19_03983 0.27 -0.2
274,337 + MPMX19_03983 0.27 -0.9
274,337 + MPMX19_03983 0.27 -1.6
274,337 + MPMX19_03983 0.27 -0.4
274,337 + MPMX19_03983 0.27 +0.6
274,337 + MPMX19_03983 0.27 -0.2
274,337 + MPMX19_03983 0.27 -0.7
274,337 + MPMX19_03983 0.27 -2.1
274,338 - MPMX19_03983 0.28 -0.9
274,338 - MPMX19_03983 0.28 -1.2
274,338 - MPMX19_03983 0.28 +0.3
274,338 - MPMX19_03983 0.28 +0.3
274,338 - MPMX19_03983 0.28 -0.4
274,338 - MPMX19_03983 0.28 +1.6
274,338 - MPMX19_03983 0.28 -0.2
274,360 + MPMX19_03983 0.32 -0.2
274,360 + MPMX19_03983 0.32 +0.1
274,360 + MPMX19_03983 0.32 -0.9
274,360 + MPMX19_03983 0.32 -0.7
274,360 + MPMX19_03983 0.32 -1.4
274,360 + MPMX19_03983 0.32 +0.8
274,360 + MPMX19_03983 0.32 -1.1
274,360 + MPMX19_03983 0.32 -0.7
274,360 + MPMX19_03983 0.32 -0.3
274,360 + MPMX19_03983 0.32 +0.4
274,361 - MPMX19_03983 0.33 +0.3
274,361 - MPMX19_03983 0.33 -0.9
274,361 - MPMX19_03983 0.33 +0.3
274,361 - MPMX19_03983 0.33 +1.7
274,361 - MPMX19_03983 0.33 +0.2
274,361 - MPMX19_03983 0.33 -1.2
274,361 - MPMX19_03983 0.33 -0.1
274,407 + MPMX19_03983 0.43 -0.4
274,407 + MPMX19_03983 0.43 -0.8
274,408 - MPMX19_03983 0.43 +0.6
274,408 - MPMX19_03983 0.43 +0.1
274,416 + MPMX19_03983 0.45 +0.6
274,431 + MPMX19_03983 0.48 -0.4
274,431 + MPMX19_03983 0.48 +0.3
274,431 + MPMX19_03983 0.48 -1.6
274,431 + MPMX19_03983 0.48 -0.5
274,431 + MPMX19_03983 0.48 -0.9
274,431 + MPMX19_03983 0.48 +0.1
274,431 + MPMX19_03983 0.48 -1.4
274,432 - MPMX19_03983 0.48 -1.2
274,432 - MPMX19_03983 0.48 -0.0
274,432 - MPMX19_03983 0.48 -0.1
274,432 - MPMX19_03983 0.48 -1.2
274,432 - MPMX19_03983 0.48 -1.8
274,432 - MPMX19_03983 0.48 -2.7
274,432 - MPMX19_03983 0.48 -1.0
274,432 - MPMX19_03983 0.48 -0.0
274,432 - MPMX19_03983 0.48 -0.0
274,432 - MPMX19_03983 0.48 -0.8

Or see this region's nucleotide sequence