Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03948 and MPMX19_03949 are separated by 258 nucleotides MPMX19_03949 and MPMX19_03950 are separated by 77 nucleotides
MPMX19_03948: MPMX19_03948 - tRNA-Ser, at 235,838 to 235,929
_03948
MPMX19_03949: MPMX19_03949 - hypothetical protein, at 236,188 to 236,757
_03949
MPMX19_03950: MPMX19_03950 - Acetyl-coenzyme A synthetase, at 236,835 to 238,643
_03950
Position (kb) 236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.634 kb on + strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.635 kb on - strand at 235.911 kb on - strand, within MPMX19_03948 at 235.911 kb on - strand, within MPMX19_03948 at 235.935 kb on - strand at 236.061 kb on - strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.159 kb on + strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.160 kb on - strand at 236.303 kb on + strand, within MPMX19_03949 at 236.303 kb on + strand, within MPMX19_03949 at 236.303 kb on + strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.304 kb on - strand, within MPMX19_03949 at 236.312 kb on + strand, within MPMX19_03949 at 236.312 kb on + strand, within MPMX19_03949 at 236.312 kb on + strand, within MPMX19_03949 at 236.313 kb on - strand, within MPMX19_03949 at 236.313 kb on - strand, within MPMX19_03949 at 236.486 kb on + strand, within MPMX19_03949 at 236.487 kb on - strand, within MPMX19_03949 at 236.487 kb on - strand, within MPMX19_03949 at 236.627 kb on + strand, within MPMX19_03949 at 236.627 kb on + strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.628 kb on - strand, within MPMX19_03949 at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.810 kb on + strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.811 kb on - strand at 236.836 kb on + strand at 236.837 kb on - strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.929 kb on + strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.930 kb on - strand at 236.932 kb on + strand at 236.932 kb on + strand at 236.932 kb on + strand at 236.932 kb on + strand at 236.933 kb on - strand at 236.933 kb on - strand at 236.933 kb on - strand at 236.933 kb on - strand at 236.933 kb on - strand at 236.983 kb on + strand at 236.983 kb on + strand at 236.984 kb on - strand at 237.187 kb on + strand, within MPMX19_03950 at 237.187 kb on + strand, within MPMX19_03950 at 237.188 kb on - strand, within MPMX19_03950 at 237.188 kb on - strand, within MPMX19_03950 at 237.227 kb on - strand, within MPMX19_03950 at 237.227 kb on - strand, within MPMX19_03950 at 237.227 kb on - strand, within MPMX19_03950 at 237.436 kb on + strand, within MPMX19_03950 at 237.436 kb on + strand, within MPMX19_03950 at 237.437 kb on - strand, within MPMX19_03950 at 237.493 kb on + strand, within MPMX19_03950 at 237.494 kb on - strand, within MPMX19_03950 at 237.496 kb on + strand, within MPMX19_03950 at 237.496 kb on + strand, within MPMX19_03950 at 237.496 kb on + strand, within MPMX19_03950 at 237.496 kb on + strand, within MPMX19_03950 at 237.496 kb on + strand, within MPMX19_03950 at 237.497 kb on - strand, within MPMX19_03950 at 237.497 kb on - strand, within MPMX19_03950 at 237.497 kb on - strand, within MPMX19_03950 at 237.505 kb on + strand, within MPMX19_03950 at 237.506 kb on - strand, within MPMX19_03950 at 237.506 kb on - strand, within MPMX19_03950 at 237.506 kb on - strand, within MPMX19_03950 at 237.506 kb on - strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.535 kb on + strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.536 kb on - strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.574 kb on + strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.575 kb on - strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.646 kb on + strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950 at 237.647 kb on - strand, within MPMX19_03950
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 235,634 + -0.1 235,634 + -0.1 235,634 + -0.2 235,634 + +1.9 235,634 + +0.2 235,634 + -1.5 235,634 + -1.0 235,635 - -0.5 235,635 - -0.6 235,635 - -1.5 235,635 - +0.8 235,635 - +0.7 235,635 - -1.2 235,911 - MPMX19_03948 0.79 -0.6 235,911 - MPMX19_03948 0.79 -0.4 235,935 - +0.7 236,061 - -0.3 236,159 + -1.1 236,159 + +0.2 236,159 + +0.0 236,159 + -0.0 236,159 + -1.4 236,159 + -1.4 236,159 + +0.5 236,159 + +1.4 236,159 + -0.4 236,159 + +1.2 236,159 + -1.0 236,159 + -0.8 236,159 + -0.7 236,159 + +0.9 236,159 + +0.2 236,159 + -1.6 236,159 + -1.2 236,159 + -1.7 236,160 - +2.0 236,160 - +0.6 236,160 - -0.5 236,160 - -0.0 236,160 - -0.6 236,160 - +0.4 236,160 - -0.8 236,160 - -0.3 236,160 - +0.6 236,160 - -0.6 236,160 - -0.6 236,160 - -1.1 236,160 - -0.8 236,160 - -1.7 236,160 - -0.5 236,160 - -0.6 236,160 - -0.0 236,160 - -1.0 236,160 - -0.4 236,160 - -1.4 236,160 - -0.8 236,160 - -1.2 236,303 + MPMX19_03949 0.20 -0.4 236,303 + MPMX19_03949 0.20 -0.8 236,303 + MPMX19_03949 0.20 -0.1 236,304 - MPMX19_03949 0.20 -0.8 236,304 - MPMX19_03949 0.20 +1.9 236,304 - MPMX19_03949 0.20 -0.1 236,304 - MPMX19_03949 0.20 +0.0 236,304 - MPMX19_03949 0.20 +0.5 236,312 + MPMX19_03949 0.22 -0.4 236,312 + MPMX19_03949 0.22 -0.5 236,312 + MPMX19_03949 0.22 -0.7 236,313 - MPMX19_03949 0.22 -0.8 236,313 - MPMX19_03949 0.22 -0.4 236,486 + MPMX19_03949 0.52 -0.9 236,487 - MPMX19_03949 0.52 +1.7 236,487 - MPMX19_03949 0.52 -1.5 236,627 + MPMX19_03949 0.77 +0.4 236,627 + MPMX19_03949 0.77 -1.1 236,628 - MPMX19_03949 0.77 -2.8 236,628 - MPMX19_03949 0.77 -1.1 236,628 - MPMX19_03949 0.77 -1.1 236,628 - MPMX19_03949 0.77 -1.5 236,628 - MPMX19_03949 0.77 +1.4 236,628 - MPMX19_03949 0.77 -1.3 236,810 + -0.6 236,810 + +0.5 236,810 + +0.3 236,810 + -0.7 236,810 + -1.2 236,810 + -1.0 236,811 - -0.8 236,811 - +0.9 236,811 - +0.2 236,811 - +1.2 236,811 - -1.1 236,811 - -0.0 236,811 - -0.1 236,811 - -0.3 236,811 - +1.2 236,811 - +0.4 236,836 + +0.2 236,837 - -2.6 236,929 + -1.3 236,929 + -1.2 236,929 + +0.4 236,929 + +0.8 236,929 + -1.3 236,929 + +0.6 236,929 + +0.3 236,929 + -0.8 236,929 + +0.0 236,929 + -0.5 236,929 + +0.7 236,929 + -1.5 236,929 + -0.1 236,930 - +0.3 236,930 - -1.2 236,930 - -0.7 236,930 - -1.5 236,930 - -2.1 236,930 - +0.7 236,930 - -0.7 236,930 - +0.6 236,932 + -0.9 236,932 + -2.0 236,932 + -1.2 236,932 + +0.2 236,933 - -1.0 236,933 - +0.6 236,933 - +0.3 236,933 - -0.3 236,933 - +0.7 236,983 + -0.2 236,983 + -0.8 236,984 - +0.8 237,187 + MPMX19_03950 0.19 -0.6 237,187 + MPMX19_03950 0.19 -1.3 237,188 - MPMX19_03950 0.20 -0.3 237,188 - MPMX19_03950 0.20 -0.4 237,227 - MPMX19_03950 0.22 -0.1 237,227 - MPMX19_03950 0.22 -1.0 237,227 - MPMX19_03950 0.22 -1.4 237,436 + MPMX19_03950 0.33 -0.8 237,436 + MPMX19_03950 0.33 +0.2 237,437 - MPMX19_03950 0.33 -0.9 237,493 + MPMX19_03950 0.36 -0.5 237,494 - MPMX19_03950 0.36 -0.8 237,496 + MPMX19_03950 0.37 -1.2 237,496 + MPMX19_03950 0.37 +0.2 237,496 + MPMX19_03950 0.37 -0.9 237,496 + MPMX19_03950 0.37 -3.5 237,496 + MPMX19_03950 0.37 +1.2 237,497 - MPMX19_03950 0.37 -1.7 237,497 - MPMX19_03950 0.37 +0.9 237,497 - MPMX19_03950 0.37 +0.7 237,505 + MPMX19_03950 0.37 +0.6 237,506 - MPMX19_03950 0.37 +0.2 237,506 - MPMX19_03950 0.37 +0.7 237,506 - MPMX19_03950 0.37 -0.2 237,506 - MPMX19_03950 0.37 +0.7 237,535 + MPMX19_03950 0.39 -0.3 237,535 + MPMX19_03950 0.39 -0.7 237,535 + MPMX19_03950 0.39 -1.2 237,535 + MPMX19_03950 0.39 -0.6 237,535 + MPMX19_03950 0.39 -0.4 237,535 + MPMX19_03950 0.39 +0.2 237,535 + MPMX19_03950 0.39 -0.9 237,536 - MPMX19_03950 0.39 -1.5 237,536 - MPMX19_03950 0.39 +0.6 237,536 - MPMX19_03950 0.39 +0.8 237,536 - MPMX19_03950 0.39 -0.6 237,536 - MPMX19_03950 0.39 -0.4 237,536 - MPMX19_03950 0.39 +0.8 237,536 - MPMX19_03950 0.39 -0.3 237,536 - MPMX19_03950 0.39 -0.2 237,536 - MPMX19_03950 0.39 -0.3 237,574 + MPMX19_03950 0.41 +1.3 237,574 + MPMX19_03950 0.41 -1.4 237,574 + MPMX19_03950 0.41 -0.1 237,574 + MPMX19_03950 0.41 +0.5 237,574 + MPMX19_03950 0.41 +0.0 237,574 + MPMX19_03950 0.41 -1.4 237,574 + MPMX19_03950 0.41 -0.1 237,574 + MPMX19_03950 0.41 -0.5 237,574 + MPMX19_03950 0.41 -0.5 237,574 + MPMX19_03950 0.41 -0.4 237,574 + MPMX19_03950 0.41 +0.3 237,574 + MPMX19_03950 0.41 -0.5 237,574 + MPMX19_03950 0.41 -0.7 237,574 + MPMX19_03950 0.41 +0.2 237,574 + MPMX19_03950 0.41 -1.2 237,574 + MPMX19_03950 0.41 -0.6 237,574 + MPMX19_03950 0.41 -0.5 237,575 - MPMX19_03950 0.41 +0.2 237,575 - MPMX19_03950 0.41 -0.5 237,575 - MPMX19_03950 0.41 -0.8 237,575 - MPMX19_03950 0.41 -1.2 237,575 - MPMX19_03950 0.41 +0.6 237,575 - MPMX19_03950 0.41 -1.0 237,646 + MPMX19_03950 0.45 +0.4 237,646 + MPMX19_03950 0.45 -0.4 237,646 + MPMX19_03950 0.45 -2.3 237,646 + MPMX19_03950 0.45 -1.3 237,646 + MPMX19_03950 0.45 -0.3 237,646 + MPMX19_03950 0.45 -1.4 237,646 + MPMX19_03950 0.45 -0.9 237,646 + MPMX19_03950 0.45 +0.8 237,646 + MPMX19_03950 0.45 -1.5 237,647 - MPMX19_03950 0.45 -1.8 237,647 - MPMX19_03950 0.45 -0.0 237,647 - MPMX19_03950 0.45 -0.2 237,647 - MPMX19_03950 0.45 +0.7 237,647 - MPMX19_03950 0.45 -0.3 237,647 - MPMX19_03950 0.45 -1.3 237,647 - MPMX19_03950 0.45 +1.0 237,647 - MPMX19_03950 0.45 +0.3 237,647 - MPMX19_03950 0.45 -0.6 237,647 - MPMX19_03950 0.45 -0.2
Or see this region's nucleotide sequence