Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03907

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03906 and MPMX19_03907 are separated by 202 nucleotidesMPMX19_03907 and MPMX19_03908 are separated by 119 nucleotides MPMX19_03906: MPMX19_03906 - Pca regulon regulatory protein, at 182,685 to 183,542 _03906 MPMX19_03907: MPMX19_03907 - Short-chain-enoyl-CoA hydratase, at 183,745 to 184,521 _03907 MPMX19_03908: MPMX19_03908 - hypothetical protein, at 184,641 to 185,741 _03908 Position (kb) 183 184 185Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 182.848 kb on + strand, within MPMX19_03906at 182.848 kb on + strand, within MPMX19_03906at 182.848 kb on + strand, within MPMX19_03906at 182.848 kb on + strand, within MPMX19_03906at 182.848 kb on + strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.849 kb on - strand, within MPMX19_03906at 182.872 kb on + strand, within MPMX19_03906at 182.873 kb on - strand, within MPMX19_03906at 182.873 kb on - strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.939 kb on + strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.940 kb on - strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.941 kb on + strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 182.942 kb on - strand, within MPMX19_03906at 183.028 kb on + strand, within MPMX19_03906at 183.028 kb on + strand, within MPMX19_03906at 183.028 kb on + strand, within MPMX19_03906at 183.028 kb on + strand, within MPMX19_03906at 183.029 kb on - strand, within MPMX19_03906at 183.029 kb on - strand, within MPMX19_03906at 183.029 kb on - strand, within MPMX19_03906at 183.029 kb on - strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.169 kb on + strand, within MPMX19_03906at 183.170 kb on - strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.208 kb on + strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.209 kb on - strand, within MPMX19_03906at 183.277 kb on + strand, within MPMX19_03906at 183.277 kb on + strand, within MPMX19_03906at 183.278 kb on - strand, within MPMX19_03906at 183.278 kb on - strand, within MPMX19_03906at 183.278 kb on - strand, within MPMX19_03906at 183.278 kb on - strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.298 kb on + strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.299 kb on - strand, within MPMX19_03906at 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.575 kb on + strandat 183.576 kb on - strandat 183.576 kb on - strandat 183.576 kb on - strandat 183.576 kb on - strandat 183.589 kb on + strandat 183.867 kb on + strand, within MPMX19_03907at 183.867 kb on + strand, within MPMX19_03907at 183.867 kb on + strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 183.868 kb on - strand, within MPMX19_03907at 184.009 kb on + strand, within MPMX19_03907at 184.010 kb on - strand, within MPMX19_03907at 184.010 kb on - strand, within MPMX19_03907at 184.010 kb on - strand, within MPMX19_03907at 184.448 kb on - strandat 184.448 kb on - strandat 184.448 kb on - strandat 184.448 kb on - strandat 184.544 kb on + strandat 184.634 kb on + strandat 184.634 kb on + strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.635 kb on - strandat 184.816 kb on - strand, within MPMX19_03908at 184.842 kb on + strand, within MPMX19_03908at 184.842 kb on + strand, within MPMX19_03908at 184.842 kb on + strand, within MPMX19_03908at 184.842 kb on + strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.843 kb on - strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.941 kb on + strand, within MPMX19_03908at 184.942 kb on - strand, within MPMX19_03908at 185.088 kb on + strand, within MPMX19_03908at 185.089 kb on - strand, within MPMX19_03908at 185.259 kb on + strand, within MPMX19_03908at 185.260 kb on - strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.283 kb on + strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.284 kb on - strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.457 kb on + strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908at 185.458 kb on - strand, within MPMX19_03908

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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182,848 + MPMX19_03906 0.19 -3.0
182,848 + MPMX19_03906 0.19 -0.8
182,848 + MPMX19_03906 0.19 -2.5
182,848 + MPMX19_03906 0.19 -1.7
182,848 + MPMX19_03906 0.19 -2.9
182,849 - MPMX19_03906 0.19 -1.5
182,849 - MPMX19_03906 0.19 -2.1
182,849 - MPMX19_03906 0.19 -2.3
182,849 - MPMX19_03906 0.19 -2.0
182,849 - MPMX19_03906 0.19 -2.5
182,849 - MPMX19_03906 0.19 -1.6
182,849 - MPMX19_03906 0.19 -0.4
182,849 - MPMX19_03906 0.19 -2.3
182,872 + MPMX19_03906 0.22 +0.2
182,873 - MPMX19_03906 0.22 -1.4
182,873 - MPMX19_03906 0.22 -0.6
182,939 + MPMX19_03906 0.30 -1.7
182,939 + MPMX19_03906 0.30 -2.9
182,939 + MPMX19_03906 0.30 -1.8
182,939 + MPMX19_03906 0.30 -1.2
182,939 + MPMX19_03906 0.30 -1.0
182,939 + MPMX19_03906 0.30 -1.1
182,939 + MPMX19_03906 0.30 -3.4
182,940 - MPMX19_03906 0.30 -1.2
182,940 - MPMX19_03906 0.30 -2.2
182,940 - MPMX19_03906 0.30 -1.5
182,940 - MPMX19_03906 0.30 -1.3
182,940 - MPMX19_03906 0.30 -2.2
182,940 - MPMX19_03906 0.30 -1.8
182,940 - MPMX19_03906 0.30 -1.0
182,940 - MPMX19_03906 0.30 -2.1
182,940 - MPMX19_03906 0.30 -1.3
182,940 - MPMX19_03906 0.30 -2.1
182,940 - MPMX19_03906 0.30 -1.8
182,940 - MPMX19_03906 0.30 -2.9
182,941 + MPMX19_03906 0.30 -0.5
182,941 + MPMX19_03906 0.30 -3.1
182,941 + MPMX19_03906 0.30 -0.8
182,941 + MPMX19_03906 0.30 -1.3
182,941 + MPMX19_03906 0.30 -2.0
182,941 + MPMX19_03906 0.30 -1.6
182,941 + MPMX19_03906 0.30 -0.8
182,941 + MPMX19_03906 0.30 -0.4
182,941 + MPMX19_03906 0.30 -1.8
182,942 - MPMX19_03906 0.30 -1.8
182,942 - MPMX19_03906 0.30 -3.2
182,942 - MPMX19_03906 0.30 -1.2
182,942 - MPMX19_03906 0.30 -3.5
182,942 - MPMX19_03906 0.30 -4.1
182,942 - MPMX19_03906 0.30 -1.6
182,942 - MPMX19_03906 0.30 -1.1
182,942 - MPMX19_03906 0.30 -2.3
183,028 + MPMX19_03906 0.40 -0.2
183,028 + MPMX19_03906 0.40 -1.3
183,028 + MPMX19_03906 0.40 -0.8
183,028 + MPMX19_03906 0.40 -0.7
183,029 - MPMX19_03906 0.40 -0.6
183,029 - MPMX19_03906 0.40 -0.4
183,029 - MPMX19_03906 0.40 -1.4
183,029 - MPMX19_03906 0.40 -2.8
183,169 + MPMX19_03906 0.56 -3.2
183,169 + MPMX19_03906 0.56 -1.1
183,169 + MPMX19_03906 0.56 -2.2
183,169 + MPMX19_03906 0.56 -1.0
183,169 + MPMX19_03906 0.56 -1.5
183,169 + MPMX19_03906 0.56 -2.4
183,169 + MPMX19_03906 0.56 -1.0
183,170 - MPMX19_03906 0.57 -1.8
183,208 + MPMX19_03906 0.61 -2.0
183,208 + MPMX19_03906 0.61 -0.8
183,208 + MPMX19_03906 0.61 -1.5
183,208 + MPMX19_03906 0.61 -3.1
183,208 + MPMX19_03906 0.61 +0.0
183,208 + MPMX19_03906 0.61 -2.6
183,208 + MPMX19_03906 0.61 -2.4
183,208 + MPMX19_03906 0.61 +0.2
183,209 - MPMX19_03906 0.61 -2.8
183,209 - MPMX19_03906 0.61 -2.6
183,209 - MPMX19_03906 0.61 -1.1
183,209 - MPMX19_03906 0.61 -2.3
183,209 - MPMX19_03906 0.61 -3.3
183,209 - MPMX19_03906 0.61 -2.3
183,209 - MPMX19_03906 0.61 -1.9
183,209 - MPMX19_03906 0.61 -2.8
183,209 - MPMX19_03906 0.61 -1.7
183,209 - MPMX19_03906 0.61 -1.7
183,209 - MPMX19_03906 0.61 -3.4
183,277 + MPMX19_03906 0.69 -2.5
183,277 + MPMX19_03906 0.69 -1.9
183,278 - MPMX19_03906 0.69 -2.2
183,278 - MPMX19_03906 0.69 -2.2
183,278 - MPMX19_03906 0.69 -3.1
183,278 - MPMX19_03906 0.69 -1.2
183,298 + MPMX19_03906 0.71 -3.6
183,298 + MPMX19_03906 0.71 -2.5
183,298 + MPMX19_03906 0.71 -2.5
183,298 + MPMX19_03906 0.71 -1.4
183,298 + MPMX19_03906 0.71 -1.8
183,298 + MPMX19_03906 0.71 -3.3
183,298 + MPMX19_03906 0.71 -1.4
183,298 + MPMX19_03906 0.71 -1.5
183,299 - MPMX19_03906 0.72 -2.5
183,299 - MPMX19_03906 0.72 -2.0
183,299 - MPMX19_03906 0.72 -1.5
183,299 - MPMX19_03906 0.72 -2.6
183,299 - MPMX19_03906 0.72 -0.5
183,299 - MPMX19_03906 0.72 -3.1
183,299 - MPMX19_03906 0.72 -1.9
183,299 - MPMX19_03906 0.72 -2.2
183,299 - MPMX19_03906 0.72 -3.2
183,575 + -2.3
183,575 + -1.0
183,575 + -2.4
183,575 + -1.8
183,575 + -2.1
183,575 + -1.8
183,575 + -0.6
183,575 + -2.6
183,575 + -1.4
183,575 + -2.8
183,575 + -2.1
183,576 - +0.0
183,576 - -0.5
183,576 - -0.4
183,576 - -1.3
183,589 + -1.4
183,867 + MPMX19_03907 0.16 -0.6
183,867 + MPMX19_03907 0.16 -0.6
183,867 + MPMX19_03907 0.16 +0.2
183,868 - MPMX19_03907 0.16 -0.2
183,868 - MPMX19_03907 0.16 -2.0
183,868 - MPMX19_03907 0.16 -1.3
183,868 - MPMX19_03907 0.16 -0.9
183,868 - MPMX19_03907 0.16 -1.0
184,009 + MPMX19_03907 0.34 -1.3
184,010 - MPMX19_03907 0.34 +0.2
184,010 - MPMX19_03907 0.34 -0.3
184,010 - MPMX19_03907 0.34 -1.1
184,448 - -2.0
184,448 - -0.4
184,448 - -2.1
184,448 - +0.6
184,544 + -0.6
184,634 + -0.4
184,634 + +0.4
184,635 - +0.5
184,635 - -0.3
184,635 - -1.2
184,635 - -1.5
184,635 - -1.0
184,635 - +0.4
184,635 - -0.6
184,635 - +0.2
184,816 - MPMX19_03908 0.16 +1.2
184,842 + MPMX19_03908 0.18 -0.1
184,842 + MPMX19_03908 0.18 -0.1
184,842 + MPMX19_03908 0.18 +0.3
184,842 + MPMX19_03908 0.18 +1.2
184,843 - MPMX19_03908 0.18 -0.6
184,843 - MPMX19_03908 0.18 -0.0
184,843 - MPMX19_03908 0.18 +0.0
184,843 - MPMX19_03908 0.18 -2.1
184,843 - MPMX19_03908 0.18 -1.5
184,843 - MPMX19_03908 0.18 +0.4
184,941 + MPMX19_03908 0.27 -0.6
184,941 + MPMX19_03908 0.27 -1.3
184,941 + MPMX19_03908 0.27 -0.4
184,941 + MPMX19_03908 0.27 +1.2
184,941 + MPMX19_03908 0.27 +1.9
184,941 + MPMX19_03908 0.27 -2.9
184,942 - MPMX19_03908 0.27 -0.3
185,088 + MPMX19_03908 0.41 -0.8
185,089 - MPMX19_03908 0.41 -0.5
185,259 + MPMX19_03908 0.56 -1.3
185,260 - MPMX19_03908 0.56 +1.0
185,283 + MPMX19_03908 0.58 +0.1
185,283 + MPMX19_03908 0.58 +0.9
185,283 + MPMX19_03908 0.58 -0.4
185,283 + MPMX19_03908 0.58 -0.9
185,283 + MPMX19_03908 0.58 +0.0
185,283 + MPMX19_03908 0.58 -1.3
185,284 - MPMX19_03908 0.58 -1.1
185,284 - MPMX19_03908 0.58 -0.4
185,284 - MPMX19_03908 0.58 -0.5
185,284 - MPMX19_03908 0.58 +0.7
185,284 - MPMX19_03908 0.58 +0.9
185,284 - MPMX19_03908 0.58 -1.1
185,457 + MPMX19_03908 0.74 +0.2
185,457 + MPMX19_03908 0.74 -0.4
185,457 + MPMX19_03908 0.74 +0.1
185,457 + MPMX19_03908 0.74 -1.1
185,457 + MPMX19_03908 0.74 -1.1
185,457 + MPMX19_03908 0.74 -1.0
185,457 + MPMX19_03908 0.74 -1.5
185,458 - MPMX19_03908 0.74 -0.9
185,458 - MPMX19_03908 0.74 +0.2
185,458 - MPMX19_03908 0.74 +0.6
185,458 - MPMX19_03908 0.74 +0.3
185,458 - MPMX19_03908 0.74 -0.9
185,458 - MPMX19_03908 0.74 +0.0
185,458 - MPMX19_03908 0.74 -2.4

Or see this region's nucleotide sequence