Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03887 and MPMX19_03888 are separated by 196 nucleotides MPMX19_03888 and MPMX19_03889 are separated by 57 nucleotides
MPMX19_03887: MPMX19_03887 - Photosystem I assembly protein Ycf3, at 160,318 to 162,240
_03887
MPMX19_03888: MPMX19_03888 - Glutathione hydrolase-like YwrD proenzyme, at 162,437 to 164,008
_03888
MPMX19_03889: MPMX19_03889 - hypothetical protein, at 164,066 to 165,088
_03889
Position (kb) 162
163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.456 kb on + strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.457 kb on - strand, within MPMX19_03887 at 161.472 kb on - strand, within MPMX19_03887 at 161.472 kb on - strand, within MPMX19_03887 at 161.552 kb on - strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.675 kb on + strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.676 kb on - strand, within MPMX19_03887 at 161.717 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.912 kb on + strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.913 kb on - strand, within MPMX19_03887 at 161.976 kb on - strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.978 kb on + strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 161.979 kb on - strand, within MPMX19_03887 at 162.116 kb on + strand at 162.116 kb on + strand at 162.117 kb on - strand at 162.147 kb on + strand at 162.147 kb on + strand at 162.147 kb on + strand at 162.148 kb on - strand at 162.148 kb on - strand at 162.270 kb on - strand at 162.283 kb on + strand at 162.283 kb on + strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.284 kb on - strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.287 kb on + strand at 162.288 kb on - strand at 162.288 kb on - strand at 162.288 kb on - strand at 162.409 kb on + strand at 162.783 kb on + strand, within MPMX19_03888 at 162.783 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.834 kb on + strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.835 kb on - strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.957 kb on + strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 162.958 kb on - strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.011 kb on + strand, within MPMX19_03888 at 163.012 kb on - strand, within MPMX19_03888 at 163.012 kb on - strand, within MPMX19_03888 at 163.032 kb on + strand, within MPMX19_03888 at 163.032 kb on + strand, within MPMX19_03888 at 163.033 kb on - strand, within MPMX19_03888 at 163.033 kb on - strand, within MPMX19_03888 at 163.175 kb on + strand, within MPMX19_03888 at 163.176 kb on - strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.434 kb on + strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.435 kb on - strand, within MPMX19_03888 at 163.602 kb on + strand, within MPMX19_03888 at 163.603 kb on - strand, within MPMX19_03888 at 163.603 kb on - strand, within MPMX19_03888 at 163.603 kb on - strand, within MPMX19_03888 at 163.680 kb on + strand, within MPMX19_03888 at 163.680 kb on + strand, within MPMX19_03888 at 163.680 kb on + strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.681 kb on - strand, within MPMX19_03888 at 163.764 kb on + strand, within MPMX19_03888 at 163.942 kb on + strand at 163.943 kb on - strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.079 kb on + strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.080 kb on - strand at 164.160 kb on + strand at 164.160 kb on + strand at 164.160 kb on + strand at 164.160 kb on + strand at 164.161 kb on - strand at 164.259 kb on + strand, within MPMX19_03889 at 164.259 kb on + strand, within MPMX19_03889 at 164.259 kb on + strand, within MPMX19_03889 at 164.259 kb on + strand, within MPMX19_03889 at 164.259 kb on + strand, within MPMX19_03889 at 164.260 kb on - strand, within MPMX19_03889 at 164.310 kb on + strand, within MPMX19_03889 at 164.310 kb on + strand, within MPMX19_03889 at 164.311 kb on - strand, within MPMX19_03889 at 164.448 kb on + strand, within MPMX19_03889 at 164.448 kb on + strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.449 kb on - strand, within MPMX19_03889 at 164.487 kb on + strand, within MPMX19_03889 at 164.487 kb on + strand, within MPMX19_03889 at 164.487 kb on + strand, within MPMX19_03889 at 164.487 kb on + strand, within MPMX19_03889 at 164.487 kb on + strand, within MPMX19_03889 at 164.488 kb on - strand, within MPMX19_03889 at 164.488 kb on - strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.784 kb on + strand, within MPMX19_03889 at 164.785 kb on - strand, within MPMX19_03889 at 164.785 kb on - strand, within MPMX19_03889 at 164.785 kb on - strand, within MPMX19_03889 at 164.785 kb on - strand, within MPMX19_03889 at 164.785 kb on - strand, within MPMX19_03889 at 164.862 kb on + strand, within MPMX19_03889 at 164.862 kb on + strand, within MPMX19_03889 at 164.863 kb on - strand, within MPMX19_03889 at 164.863 kb on - strand, within MPMX19_03889 at 164.863 kb on - strand, within MPMX19_03889 at 164.863 kb on - strand, within MPMX19_03889 at 164.946 kb on + strand, within MPMX19_03889 at 164.946 kb on + strand, within MPMX19_03889 at 164.946 kb on + strand, within MPMX19_03889 at 164.947 kb on - strand, within MPMX19_03889 at 164.947 kb on - strand, within MPMX19_03889 at 164.947 kb on - strand, within MPMX19_03889
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 161,456 + MPMX19_03887 0.59 +0.2 161,456 + MPMX19_03887 0.59 +0.0 161,456 + MPMX19_03887 0.59 +0.8 161,456 + MPMX19_03887 0.59 +0.0 161,456 + MPMX19_03887 0.59 -1.7 161,457 - MPMX19_03887 0.59 -1.0 161,457 - MPMX19_03887 0.59 -1.1 161,457 - MPMX19_03887 0.59 +0.2 161,457 - MPMX19_03887 0.59 -0.5 161,457 - MPMX19_03887 0.59 -0.8 161,457 - MPMX19_03887 0.59 -0.6 161,457 - MPMX19_03887 0.59 -1.2 161,472 - MPMX19_03887 0.60 -0.4 161,472 - MPMX19_03887 0.60 +0.9 161,552 - MPMX19_03887 0.64 -1.1 161,675 + MPMX19_03887 0.71 -0.4 161,675 + MPMX19_03887 0.71 +1.2 161,675 + MPMX19_03887 0.71 -1.0 161,675 + MPMX19_03887 0.71 -0.8 161,675 + MPMX19_03887 0.71 -0.3 161,675 + MPMX19_03887 0.71 +0.0 161,676 - MPMX19_03887 0.71 -1.3 161,676 - MPMX19_03887 0.71 +0.3 161,676 - MPMX19_03887 0.71 +0.3 161,676 - MPMX19_03887 0.71 +0.0 161,676 - MPMX19_03887 0.71 +0.6 161,717 + MPMX19_03887 0.73 -0.4 161,912 + MPMX19_03887 0.83 -0.7 161,912 + MPMX19_03887 0.83 +0.2 161,912 + MPMX19_03887 0.83 -1.8 161,913 - MPMX19_03887 0.83 -1.0 161,913 - MPMX19_03887 0.83 +1.3 161,913 - MPMX19_03887 0.83 -0.1 161,913 - MPMX19_03887 0.83 +0.0 161,976 - MPMX19_03887 0.86 +0.9 161,978 + MPMX19_03887 0.86 +1.0 161,978 + MPMX19_03887 0.86 +0.4 161,978 + MPMX19_03887 0.86 +1.0 161,978 + MPMX19_03887 0.86 +1.4 161,978 + MPMX19_03887 0.86 +1.5 161,978 + MPMX19_03887 0.86 +0.5 161,978 + MPMX19_03887 0.86 -1.0 161,978 + MPMX19_03887 0.86 -0.1 161,978 + MPMX19_03887 0.86 -0.9 161,978 + MPMX19_03887 0.86 -0.9 161,979 - MPMX19_03887 0.86 +2.2 161,979 - MPMX19_03887 0.86 +0.0 161,979 - MPMX19_03887 0.86 +1.3 161,979 - MPMX19_03887 0.86 -2.5 161,979 - MPMX19_03887 0.86 -1.4 161,979 - MPMX19_03887 0.86 -0.3 161,979 - MPMX19_03887 0.86 +0.5 161,979 - MPMX19_03887 0.86 +1.2 162,116 + -1.0 162,116 + -0.1 162,117 - -0.6 162,147 + -0.4 162,147 + -1.0 162,147 + -0.3 162,148 - -0.8 162,148 - +0.2 162,270 - -0.5 162,283 + -0.6 162,283 + -1.1 162,284 - -0.1 162,284 - -1.1 162,284 - +0.0 162,284 - -0.1 162,284 - +0.9 162,284 - +0.1 162,284 - +0.2 162,284 - -0.4 162,284 - +0.8 162,284 - -1.1 162,287 + -0.4 162,287 + -0.7 162,287 + -0.5 162,287 + -0.8 162,287 + -1.4 162,287 + -0.0 162,288 - +1.3 162,288 - -1.5 162,288 - -0.4 162,409 + -0.1 162,783 + MPMX19_03888 0.22 -0.5 162,783 + MPMX19_03888 0.22 -1.0 162,834 + MPMX19_03888 0.25 -0.7 162,834 + MPMX19_03888 0.25 -0.6 162,834 + MPMX19_03888 0.25 +1.5 162,834 + MPMX19_03888 0.25 -0.8 162,834 + MPMX19_03888 0.25 -0.3 162,834 + MPMX19_03888 0.25 +0.4 162,834 + MPMX19_03888 0.25 +0.7 162,834 + MPMX19_03888 0.25 +0.7 162,835 - MPMX19_03888 0.25 +0.3 162,835 - MPMX19_03888 0.25 -0.9 162,835 - MPMX19_03888 0.25 -0.1 162,835 - MPMX19_03888 0.25 +0.6 162,835 - MPMX19_03888 0.25 +1.2 162,835 - MPMX19_03888 0.25 -1.4 162,835 - MPMX19_03888 0.25 +0.2 162,957 + MPMX19_03888 0.33 +0.7 162,957 + MPMX19_03888 0.33 -0.3 162,957 + MPMX19_03888 0.33 -1.6 162,957 + MPMX19_03888 0.33 -0.1 162,957 + MPMX19_03888 0.33 -0.3 162,957 + MPMX19_03888 0.33 +0.3 162,957 + MPMX19_03888 0.33 +1.3 162,958 - MPMX19_03888 0.33 +0.0 162,958 - MPMX19_03888 0.33 +1.6 162,958 - MPMX19_03888 0.33 -2.0 162,958 - MPMX19_03888 0.33 +0.2 162,958 - MPMX19_03888 0.33 +1.9 163,011 + MPMX19_03888 0.37 +0.4 163,011 + MPMX19_03888 0.37 -0.1 163,011 + MPMX19_03888 0.37 -1.1 163,011 + MPMX19_03888 0.37 +0.5 163,011 + MPMX19_03888 0.37 +0.2 163,011 + MPMX19_03888 0.37 -0.6 163,012 - MPMX19_03888 0.37 -0.4 163,012 - MPMX19_03888 0.37 -0.2 163,032 + MPMX19_03888 0.38 -0.1 163,032 + MPMX19_03888 0.38 -0.4 163,033 - MPMX19_03888 0.38 -0.1 163,033 - MPMX19_03888 0.38 -0.6 163,175 + MPMX19_03888 0.47 -0.6 163,176 - MPMX19_03888 0.47 +1.0 163,434 + MPMX19_03888 0.63 -0.6 163,434 + MPMX19_03888 0.63 +1.4 163,434 + MPMX19_03888 0.63 -1.4 163,434 + MPMX19_03888 0.63 +0.2 163,434 + MPMX19_03888 0.63 +1.0 163,434 + MPMX19_03888 0.63 +0.9 163,434 + MPMX19_03888 0.63 -1.3 163,434 + MPMX19_03888 0.63 -1.1 163,434 + MPMX19_03888 0.63 -0.5 163,435 - MPMX19_03888 0.63 +0.4 163,435 - MPMX19_03888 0.63 -0.7 163,435 - MPMX19_03888 0.63 -0.1 163,435 - MPMX19_03888 0.63 -0.9 163,435 - MPMX19_03888 0.63 -1.1 163,435 - MPMX19_03888 0.63 +0.6 163,602 + MPMX19_03888 0.74 +0.0 163,603 - MPMX19_03888 0.74 +0.6 163,603 - MPMX19_03888 0.74 -0.8 163,603 - MPMX19_03888 0.74 +0.7 163,680 + MPMX19_03888 0.79 +0.2 163,680 + MPMX19_03888 0.79 +0.6 163,680 + MPMX19_03888 0.79 +0.4 163,681 - MPMX19_03888 0.79 -0.9 163,681 - MPMX19_03888 0.79 +0.7 163,681 - MPMX19_03888 0.79 -1.0 163,681 - MPMX19_03888 0.79 +0.3 163,681 - MPMX19_03888 0.79 +1.3 163,681 - MPMX19_03888 0.79 +0.2 163,681 - MPMX19_03888 0.79 -1.3 163,764 + MPMX19_03888 0.84 +0.3 163,942 + -0.4 163,943 - -0.3 164,079 + -0.6 164,079 + +0.2 164,079 + +0.6 164,079 + +0.6 164,079 + +0.5 164,079 + +1.5 164,079 + -0.8 164,079 + +1.4 164,079 + -0.5 164,079 + -1.7 164,079 + -0.7 164,079 + -0.5 164,079 + -0.8 164,079 + +0.5 164,079 + +0.1 164,080 - -0.1 164,080 - +0.8 164,080 - -0.5 164,080 - -2.0 164,080 - -0.0 164,080 - -0.5 164,080 - -0.8 164,080 - -1.1 164,080 - -1.7 164,160 + -1.2 164,160 + -0.3 164,160 + -0.8 164,160 + -0.8 164,161 - -0.4 164,259 + MPMX19_03889 0.19 -2.1 164,259 + MPMX19_03889 0.19 +0.9 164,259 + MPMX19_03889 0.19 +0.9 164,259 + MPMX19_03889 0.19 -0.2 164,259 + MPMX19_03889 0.19 -0.1 164,260 - MPMX19_03889 0.19 -1.4 164,310 + MPMX19_03889 0.24 +1.0 164,310 + MPMX19_03889 0.24 -1.6 164,311 - MPMX19_03889 0.24 -1.0 164,448 + MPMX19_03889 0.37 +0.5 164,448 + MPMX19_03889 0.37 +0.2 164,449 - MPMX19_03889 0.37 -0.6 164,449 - MPMX19_03889 0.37 -0.6 164,449 - MPMX19_03889 0.37 -0.7 164,449 - MPMX19_03889 0.37 -0.7 164,449 - MPMX19_03889 0.37 -2.2 164,449 - MPMX19_03889 0.37 -0.4 164,487 + MPMX19_03889 0.41 -1.3 164,487 + MPMX19_03889 0.41 +0.6 164,487 + MPMX19_03889 0.41 -0.1 164,487 + MPMX19_03889 0.41 -1.1 164,487 + MPMX19_03889 0.41 -0.8 164,488 - MPMX19_03889 0.41 -0.5 164,488 - MPMX19_03889 0.41 -1.1 164,784 + MPMX19_03889 0.70 +1.2 164,784 + MPMX19_03889 0.70 +1.8 164,784 + MPMX19_03889 0.70 +0.7 164,784 + MPMX19_03889 0.70 -1.0 164,784 + MPMX19_03889 0.70 +0.9 164,784 + MPMX19_03889 0.70 +1.0 164,785 - MPMX19_03889 0.70 +0.2 164,785 - MPMX19_03889 0.70 -0.1 164,785 - MPMX19_03889 0.70 +0.6 164,785 - MPMX19_03889 0.70 -1.5 164,785 - MPMX19_03889 0.70 +0.1 164,862 + MPMX19_03889 0.78 -1.3 164,862 + MPMX19_03889 0.78 -0.5 164,863 - MPMX19_03889 0.78 -0.4 164,863 - MPMX19_03889 0.78 -0.5 164,863 - MPMX19_03889 0.78 +0.3 164,863 - MPMX19_03889 0.78 -1.5 164,946 + MPMX19_03889 0.86 -0.6 164,946 + MPMX19_03889 0.86 -0.8 164,946 + MPMX19_03889 0.86 -0.8 164,947 - MPMX19_03889 0.86 +0.4 164,947 - MPMX19_03889 0.86 -0.1 164,947 - MPMX19_03889 0.86 +0.2
Or see this region's nucleotide sequence