Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03884

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03883 and MPMX19_03884 overlap by 14 nucleotidesMPMX19_03884 and MPMX19_03885 overlap by 1 nucleotides MPMX19_03883: MPMX19_03883 - hypothetical protein, at 139,660 to 141,135 _03883 MPMX19_03884: MPMX19_03884 - hypothetical protein, at 141,122 to 142,891 _03884 MPMX19_03885: MPMX19_03885 - Lipopolysaccharide assembly protein B, at 142,891 to 144,777 _03885 Position (kb) 141 142 143Strain fitness (log2 ratio) -2 -1 0 1 2 3at 140.255 kb on - strand, within MPMX19_03883at 140.255 kb on - strand, within MPMX19_03883at 140.255 kb on - strand, within MPMX19_03883at 140.255 kb on - strand, within MPMX19_03883at 140.359 kb on + strand, within MPMX19_03883at 140.359 kb on + strand, within MPMX19_03883at 140.359 kb on + strand, within MPMX19_03883at 140.359 kb on + strand, within MPMX19_03883at 140.360 kb on - strand, within MPMX19_03883at 140.360 kb on - strand, within MPMX19_03883at 140.360 kb on - strand, within MPMX19_03883at 140.360 kb on - strand, within MPMX19_03883at 140.360 kb on - strand, within MPMX19_03883at 140.398 kb on + strand, within MPMX19_03883at 140.398 kb on + strand, within MPMX19_03883at 140.399 kb on - strand, within MPMX19_03883at 140.602 kb on + strand, within MPMX19_03883at 140.603 kb on - strand, within MPMX19_03883at 141.152 kb on + strandat 141.152 kb on + strandat 141.153 kb on - strandat 141.153 kb on - strandat 141.153 kb on - strandat 141.153 kb on - strandat 141.153 kb on - strandat 141.845 kb on + strand, within MPMX19_03884at 141.852 kb on - strand, within MPMX19_03884at 141.852 kb on - strand, within MPMX19_03884at 142.251 kb on - strand, within MPMX19_03884at 142.532 kb on + strand, within MPMX19_03884at 142.532 kb on + strand, within MPMX19_03884at 142.533 kb on - strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.625 kb on + strand, within MPMX19_03884at 142.626 kb on - strand, within MPMX19_03884at 142.626 kb on - strand, within MPMX19_03884at 142.626 kb on - strand, within MPMX19_03884at 142.635 kb on - strand, within MPMX19_03884at 142.635 kb on - strand, within MPMX19_03884at 143.267 kb on + strand, within MPMX19_03885at 143.267 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.272 kb on + strand, within MPMX19_03885at 143.273 kb on - strand, within MPMX19_03885at 143.273 kb on - strand, within MPMX19_03885at 143.273 kb on - strand, within MPMX19_03885at 143.273 kb on - strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.374 kb on + strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.375 kb on - strand, within MPMX19_03885at 143.546 kb on - strand, within MPMX19_03885at 143.692 kb on + strand, within MPMX19_03885at 143.692 kb on + strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.693 kb on - strand, within MPMX19_03885at 143.785 kb on + strand, within MPMX19_03885at 143.785 kb on + strand, within MPMX19_03885at 143.785 kb on + strand, within MPMX19_03885at 143.786 kb on - strand, within MPMX19_03885at 143.786 kb on - strand, within MPMX19_03885at 143.786 kb on - strand, within MPMX19_03885at 143.786 kb on - strand, within MPMX19_03885

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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140,255 - MPMX19_03883 0.40 -0.1
140,255 - MPMX19_03883 0.40 -0.9
140,255 - MPMX19_03883 0.40 -1.3
140,255 - MPMX19_03883 0.40 -0.0
140,359 + MPMX19_03883 0.47 +0.1
140,359 + MPMX19_03883 0.47 -2.1
140,359 + MPMX19_03883 0.47 -0.8
140,359 + MPMX19_03883 0.47 +1.2
140,360 - MPMX19_03883 0.47 +0.5
140,360 - MPMX19_03883 0.47 +0.4
140,360 - MPMX19_03883 0.47 -0.8
140,360 - MPMX19_03883 0.47 +0.1
140,360 - MPMX19_03883 0.47 +1.0
140,398 + MPMX19_03883 0.50 -0.8
140,398 + MPMX19_03883 0.50 +0.2
140,399 - MPMX19_03883 0.50 -0.5
140,602 + MPMX19_03883 0.64 +0.1
140,603 - MPMX19_03883 0.64 +0.9
141,152 + -1.0
141,152 + -0.2
141,153 - +1.2
141,153 - +0.0
141,153 - -1.4
141,153 - -0.1
141,153 - +0.2
141,845 + MPMX19_03884 0.41 +0.4
141,852 - MPMX19_03884 0.41 -1.4
141,852 - MPMX19_03884 0.41 -0.0
142,251 - MPMX19_03884 0.64 -0.6
142,532 + MPMX19_03884 0.80 +0.2
142,532 + MPMX19_03884 0.80 +0.6
142,533 - MPMX19_03884 0.80 +0.3
142,625 + MPMX19_03884 0.85 -0.5
142,625 + MPMX19_03884 0.85 +0.6
142,625 + MPMX19_03884 0.85 -0.3
142,625 + MPMX19_03884 0.85 +1.0
142,625 + MPMX19_03884 0.85 -1.1
142,625 + MPMX19_03884 0.85 +0.7
142,626 - MPMX19_03884 0.85 -0.4
142,626 - MPMX19_03884 0.85 -0.1
142,626 - MPMX19_03884 0.85 -0.4
142,635 - MPMX19_03884 0.85 -0.7
142,635 - MPMX19_03884 0.85 +0.5
143,267 + MPMX19_03885 0.20 -1.9
143,267 + MPMX19_03885 0.20 -1.0
143,272 + MPMX19_03885 0.20 +0.9
143,272 + MPMX19_03885 0.20 +0.7
143,272 + MPMX19_03885 0.20 -0.3
143,272 + MPMX19_03885 0.20 -0.6
143,272 + MPMX19_03885 0.20 +0.6
143,272 + MPMX19_03885 0.20 -0.4
143,272 + MPMX19_03885 0.20 -0.4
143,272 + MPMX19_03885 0.20 +1.2
143,272 + MPMX19_03885 0.20 -1.5
143,273 - MPMX19_03885 0.20 +0.2
143,273 - MPMX19_03885 0.20 +1.0
143,273 - MPMX19_03885 0.20 +0.6
143,273 - MPMX19_03885 0.20 +1.0
143,374 + MPMX19_03885 0.26 -1.1
143,374 + MPMX19_03885 0.26 +0.5
143,374 + MPMX19_03885 0.26 -0.8
143,374 + MPMX19_03885 0.26 +0.1
143,374 + MPMX19_03885 0.26 -1.6
143,374 + MPMX19_03885 0.26 -0.4
143,374 + MPMX19_03885 0.26 +0.3
143,374 + MPMX19_03885 0.26 -1.0
143,374 + MPMX19_03885 0.26 +0.6
143,374 + MPMX19_03885 0.26 -1.0
143,374 + MPMX19_03885 0.26 +0.0
143,374 + MPMX19_03885 0.26 -0.8
143,374 + MPMX19_03885 0.26 -0.0
143,374 + MPMX19_03885 0.26 -0.6
143,375 - MPMX19_03885 0.26 +0.6
143,375 - MPMX19_03885 0.26 +0.6
143,375 - MPMX19_03885 0.26 +1.2
143,375 - MPMX19_03885 0.26 +1.0
143,375 - MPMX19_03885 0.26 -2.7
143,375 - MPMX19_03885 0.26 -1.6
143,375 - MPMX19_03885 0.26 +0.9
143,375 - MPMX19_03885 0.26 -1.3
143,375 - MPMX19_03885 0.26 +0.0
143,546 - MPMX19_03885 0.35 -1.0
143,692 + MPMX19_03885 0.42 -1.3
143,692 + MPMX19_03885 0.42 -1.4
143,693 - MPMX19_03885 0.43 +0.6
143,693 - MPMX19_03885 0.43 +0.2
143,693 - MPMX19_03885 0.43 -0.1
143,693 - MPMX19_03885 0.43 -1.5
143,693 - MPMX19_03885 0.43 +1.3
143,693 - MPMX19_03885 0.43 +0.7
143,693 - MPMX19_03885 0.43 -0.1
143,785 + MPMX19_03885 0.47 -1.9
143,785 + MPMX19_03885 0.47 -0.4
143,785 + MPMX19_03885 0.47 +0.3
143,786 - MPMX19_03885 0.47 +1.8
143,786 - MPMX19_03885 0.47 +0.8
143,786 - MPMX19_03885 0.47 +2.9
143,786 - MPMX19_03885 0.47 -0.9

Or see this region's nucleotide sequence