Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03882 and MPMX19_03883 are separated by 87 nucleotides MPMX19_03883 and MPMX19_03884 overlap by 14 nucleotides
MPMX19_03882: MPMX19_03882 - hypothetical protein, at 137,680 to 139,572
_03882
MPMX19_03883: MPMX19_03883 - hypothetical protein, at 139,660 to 141,135
_03883
MPMX19_03884: MPMX19_03884 - hypothetical protein, at 141,122 to 142,891
_03884
Position (kb)
139
140
141
142 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.112 kb on + strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.113 kb on - strand, within MPMX19_03882 at 139.584 kb on + strand at 139.584 kb on + strand at 139.585 kb on - strand at 139.585 kb on - strand at 140.255 kb on - strand, within MPMX19_03883 at 140.255 kb on - strand, within MPMX19_03883 at 140.255 kb on - strand, within MPMX19_03883 at 140.255 kb on - strand, within MPMX19_03883 at 140.359 kb on + strand, within MPMX19_03883 at 140.359 kb on + strand, within MPMX19_03883 at 140.359 kb on + strand, within MPMX19_03883 at 140.359 kb on + strand, within MPMX19_03883 at 140.360 kb on - strand, within MPMX19_03883 at 140.360 kb on - strand, within MPMX19_03883 at 140.360 kb on - strand, within MPMX19_03883 at 140.360 kb on - strand, within MPMX19_03883 at 140.360 kb on - strand, within MPMX19_03883 at 140.398 kb on + strand, within MPMX19_03883 at 140.398 kb on + strand, within MPMX19_03883 at 140.399 kb on - strand, within MPMX19_03883 at 140.602 kb on + strand, within MPMX19_03883 at 140.603 kb on - strand, within MPMX19_03883 at 141.152 kb on + strand at 141.152 kb on + strand at 141.153 kb on - strand at 141.153 kb on - strand at 141.153 kb on - strand at 141.153 kb on - strand at 141.153 kb on - strand at 141.845 kb on + strand, within MPMX19_03884 at 141.852 kb on - strand, within MPMX19_03884 at 141.852 kb on - strand, within MPMX19_03884
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 139,112 + MPMX19_03882 0.76 -0.6 139,112 + MPMX19_03882 0.76 -0.1 139,112 + MPMX19_03882 0.76 +1.1 139,112 + MPMX19_03882 0.76 -0.1 139,112 + MPMX19_03882 0.76 +0.8 139,112 + MPMX19_03882 0.76 -0.9 139,112 + MPMX19_03882 0.76 +0.2 139,112 + MPMX19_03882 0.76 +0.6 139,113 - MPMX19_03882 0.76 -0.5 139,113 - MPMX19_03882 0.76 -0.0 139,113 - MPMX19_03882 0.76 +1.8 139,113 - MPMX19_03882 0.76 -1.5 139,113 - MPMX19_03882 0.76 -0.0 139,113 - MPMX19_03882 0.76 +0.8 139,113 - MPMX19_03882 0.76 +0.3 139,584 + -0.7 139,584 + -0.5 139,585 - -0.3 139,585 - -0.2 140,255 - MPMX19_03883 0.40 -0.1 140,255 - MPMX19_03883 0.40 -0.9 140,255 - MPMX19_03883 0.40 -1.3 140,255 - MPMX19_03883 0.40 -0.0 140,359 + MPMX19_03883 0.47 +0.1 140,359 + MPMX19_03883 0.47 -2.1 140,359 + MPMX19_03883 0.47 -0.8 140,359 + MPMX19_03883 0.47 +1.2 140,360 - MPMX19_03883 0.47 +0.5 140,360 - MPMX19_03883 0.47 +0.4 140,360 - MPMX19_03883 0.47 -0.8 140,360 - MPMX19_03883 0.47 +0.1 140,360 - MPMX19_03883 0.47 +1.0 140,398 + MPMX19_03883 0.50 -0.8 140,398 + MPMX19_03883 0.50 +0.2 140,399 - MPMX19_03883 0.50 -0.5 140,602 + MPMX19_03883 0.64 +0.1 140,603 - MPMX19_03883 0.64 +0.9 141,152 + -1.0 141,152 + -0.2 141,153 - +1.2 141,153 - +0.0 141,153 - -1.4 141,153 - -0.1 141,153 - +0.2 141,845 + MPMX19_03884 0.41 +0.4 141,852 - MPMX19_03884 0.41 -1.4 141,852 - MPMX19_03884 0.41 -0.0
Or see this region's nucleotide sequence