Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03881

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03880 and MPMX19_03881 are separated by 262 nucleotidesMPMX19_03881 and MPMX19_03882 are separated by 21 nucleotides MPMX19_03880: MPMX19_03880 - hypothetical protein, at 133,323 to 136,073 _03880 MPMX19_03881: MPMX19_03881 - hypothetical protein, at 136,336 to 137,658 _03881 MPMX19_03882: MPMX19_03882 - hypothetical protein, at 137,680 to 139,572 _03882 Position (kb) 136 137 138Strain fitness (log2 ratio) -2 -1 0 1 2at 135.631 kb on + strand, within MPMX19_03880at 135.631 kb on + strand, within MPMX19_03880at 135.631 kb on + strand, within MPMX19_03880at 135.631 kb on + strand, within MPMX19_03880at 135.631 kb on + strand, within MPMX19_03880at 135.631 kb on + strand, within MPMX19_03880at 135.631 kb on + strand, within MPMX19_03880at 135.632 kb on - strand, within MPMX19_03880at 135.632 kb on - strand, within MPMX19_03880at 135.632 kb on - strand, within MPMX19_03880at 135.632 kb on - strand, within MPMX19_03880at 135.632 kb on - strand, within MPMX19_03880at 135.632 kb on - strand, within MPMX19_03880at 135.632 kb on - strand, within MPMX19_03880at 135.632 kb on - strand, within MPMX19_03880at 135.632 kb on - strand, within MPMX19_03880at 135.655 kb on + strand, within MPMX19_03880at 135.670 kb on + strand, within MPMX19_03880at 135.670 kb on + strand, within MPMX19_03880at 135.670 kb on + strand, within MPMX19_03880at 135.670 kb on + strand, within MPMX19_03880at 135.670 kb on + strand, within MPMX19_03880at 135.671 kb on - strand, within MPMX19_03880at 135.671 kb on - strand, within MPMX19_03880at 135.671 kb on - strand, within MPMX19_03880at 135.682 kb on + strand, within MPMX19_03880at 135.682 kb on + strand, within MPMX19_03880at 135.682 kb on + strand, within MPMX19_03880at 135.682 kb on + strand, within MPMX19_03880at 135.682 kb on + strand, within MPMX19_03880at 135.682 kb on + strand, within MPMX19_03880at 135.682 kb on + strand, within MPMX19_03880at 135.683 kb on - strand, within MPMX19_03880at 135.683 kb on - strand, within MPMX19_03880at 135.683 kb on - strand, within MPMX19_03880at 135.683 kb on - strand, within MPMX19_03880at 135.853 kb on + strandat 135.854 kb on - strandat 136.033 kb on + strandat 136.033 kb on + strandat 136.034 kb on - strandat 136.034 kb on - strandat 136.175 kb on + strandat 136.176 kb on - strandat 136.300 kb on + strandat 136.300 kb on + strandat 136.300 kb on + strandat 136.300 kb on + strandat 136.301 kb on - strandat 136.301 kb on - strandat 136.301 kb on - strandat 136.301 kb on - strandat 136.301 kb on - strandat 136.301 kb on - strandat 136.301 kb on - strandat 136.301 kb on - strandat 136.301 kb on - strandat 136.314 kb on + strandat 136.314 kb on + strandat 136.315 kb on - strandat 136.335 kb on + strandat 136.335 kb on + strandat 136.335 kb on + strandat 136.336 kb on - strandat 136.336 kb on - strandat 136.561 kb on + strand, within MPMX19_03881at 136.561 kb on + strand, within MPMX19_03881at 136.562 kb on - strand, within MPMX19_03881at 136.570 kb on + strand, within MPMX19_03881at 136.570 kb on + strand, within MPMX19_03881at 136.570 kb on + strand, within MPMX19_03881at 136.570 kb on + strand, within MPMX19_03881at 136.570 kb on + strand, within MPMX19_03881at 136.570 kb on + strand, within MPMX19_03881at 136.570 kb on + strand, within MPMX19_03881at 136.570 kb on + strand, within MPMX19_03881at 136.570 kb on + strand, within MPMX19_03881at 136.570 kb on + strand, within MPMX19_03881at 136.570 kb on + strand, within MPMX19_03881at 136.571 kb on - strand, within MPMX19_03881at 136.571 kb on - strand, within MPMX19_03881at 136.571 kb on - strand, within MPMX19_03881at 136.571 kb on - strand, within MPMX19_03881at 136.571 kb on - strand, within MPMX19_03881at 136.571 kb on - strand, within MPMX19_03881at 136.571 kb on - strand, within MPMX19_03881at 136.571 kb on - strand, within MPMX19_03881at 136.571 kb on - strand, within MPMX19_03881at 136.571 kb on - strand, within MPMX19_03881at 136.708 kb on + strand, within MPMX19_03881at 136.708 kb on + strand, within MPMX19_03881at 136.709 kb on - strand, within MPMX19_03881at 136.709 kb on - strand, within MPMX19_03881at 136.709 kb on - strand, within MPMX19_03881at 136.867 kb on + strand, within MPMX19_03881at 136.867 kb on + strand, within MPMX19_03881at 136.867 kb on + strand, within MPMX19_03881at 136.867 kb on + strand, within MPMX19_03881at 136.867 kb on + strand, within MPMX19_03881at 136.868 kb on - strand, within MPMX19_03881at 136.868 kb on - strand, within MPMX19_03881at 136.868 kb on - strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.951 kb on + strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 136.952 kb on - strand, within MPMX19_03881at 137.011 kb on + strand, within MPMX19_03881at 137.011 kb on + strand, within MPMX19_03881at 137.011 kb on + strand, within MPMX19_03881at 137.011 kb on + strand, within MPMX19_03881at 137.012 kb on - strand, within MPMX19_03881at 137.012 kb on - strand, within MPMX19_03881at 137.012 kb on - strand, within MPMX19_03881at 137.012 kb on - strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.014 kb on + strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.015 kb on - strand, within MPMX19_03881at 137.218 kb on + strand, within MPMX19_03881at 137.218 kb on + strand, within MPMX19_03881at 137.219 kb on - strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.311 kb on + strand, within MPMX19_03881at 137.312 kb on - strand, within MPMX19_03881at 137.312 kb on - strand, within MPMX19_03881at 137.312 kb on - strand, within MPMX19_03881at 137.424 kb on + strand, within MPMX19_03881at 137.424 kb on + strand, within MPMX19_03881at 137.424 kb on + strand, within MPMX19_03881at 137.479 kb on + strand, within MPMX19_03881at 137.479 kb on + strand, within MPMX19_03881at 137.479 kb on + strand, within MPMX19_03881at 137.479 kb on + strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 137.480 kb on - strand, within MPMX19_03881at 138.134 kb on + strand, within MPMX19_03882at 138.134 kb on + strand, within MPMX19_03882at 138.134 kb on + strand, within MPMX19_03882at 138.134 kb on + strand, within MPMX19_03882at 138.134 kb on + strand, within MPMX19_03882at 138.135 kb on - strand, within MPMX19_03882at 138.135 kb on - strand, within MPMX19_03882at 138.135 kb on - strand, within MPMX19_03882at 138.135 kb on - strand, within MPMX19_03882at 138.201 kb on - strand, within MPMX19_03882at 138.251 kb on + strand, within MPMX19_03882at 138.252 kb on - strand, within MPMX19_03882at 138.344 kb on + strand, within MPMX19_03882at 138.344 kb on + strand, within MPMX19_03882at 138.345 kb on - strand, within MPMX19_03882at 138.443 kb on + strand, within MPMX19_03882at 138.443 kb on + strand, within MPMX19_03882at 138.443 kb on + strand, within MPMX19_03882at 138.443 kb on + strand, within MPMX19_03882at 138.444 kb on - strand, within MPMX19_03882at 138.444 kb on - strand, within MPMX19_03882at 138.635 kb on + strand, within MPMX19_03882at 138.635 kb on + strand, within MPMX19_03882at 138.635 kb on + strand, within MPMX19_03882at 138.635 kb on + strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.636 kb on - strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.650 kb on + strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882at 138.651 kb on - strand, within MPMX19_03882

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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135,631 + MPMX19_03880 0.84 +0.2
135,631 + MPMX19_03880 0.84 -0.1
135,631 + MPMX19_03880 0.84 +0.3
135,631 + MPMX19_03880 0.84 -1.1
135,631 + MPMX19_03880 0.84 -1.5
135,631 + MPMX19_03880 0.84 -0.8
135,631 + MPMX19_03880 0.84 -0.5
135,632 - MPMX19_03880 0.84 -1.1
135,632 - MPMX19_03880 0.84 -1.0
135,632 - MPMX19_03880 0.84 +0.0
135,632 - MPMX19_03880 0.84 -1.3
135,632 - MPMX19_03880 0.84 -0.4
135,632 - MPMX19_03880 0.84 -1.0
135,632 - MPMX19_03880 0.84 -0.6
135,632 - MPMX19_03880 0.84 -0.7
135,632 - MPMX19_03880 0.84 -0.7
135,655 + MPMX19_03880 0.85 -1.6
135,670 + MPMX19_03880 0.85 -0.5
135,670 + MPMX19_03880 0.85 +0.2
135,670 + MPMX19_03880 0.85 +1.0
135,670 + MPMX19_03880 0.85 +1.8
135,670 + MPMX19_03880 0.85 -0.1
135,671 - MPMX19_03880 0.85 -1.3
135,671 - MPMX19_03880 0.85 -1.1
135,671 - MPMX19_03880 0.85 +0.2
135,682 + MPMX19_03880 0.86 +0.8
135,682 + MPMX19_03880 0.86 +0.6
135,682 + MPMX19_03880 0.86 +0.9
135,682 + MPMX19_03880 0.86 -0.9
135,682 + MPMX19_03880 0.86 -1.3
135,682 + MPMX19_03880 0.86 -1.5
135,682 + MPMX19_03880 0.86 -1.2
135,683 - MPMX19_03880 0.86 -0.3
135,683 - MPMX19_03880 0.86 +0.1
135,683 - MPMX19_03880 0.86 -1.1
135,683 - MPMX19_03880 0.86 +1.1
135,853 + +1.6
135,854 - +0.2
136,033 + -1.6
136,033 + -1.7
136,034 - -0.4
136,034 - -1.6
136,175 + +0.2
136,176 - +0.9
136,300 + +2.2
136,300 + +0.6
136,300 + -0.9
136,300 + -1.9
136,301 - -1.7
136,301 - -1.5
136,301 - -1.1
136,301 - +0.2
136,301 - -0.4
136,301 - +0.2
136,301 - -1.9
136,301 - -2.5
136,301 - -0.4
136,314 + +0.0
136,314 + +0.4
136,315 - +1.5
136,335 + +1.2
136,335 + -0.5
136,335 + +2.2
136,336 - -1.1
136,336 - -0.2
136,561 + MPMX19_03881 0.17 -0.4
136,561 + MPMX19_03881 0.17 -0.8
136,562 - MPMX19_03881 0.17 +0.4
136,570 + MPMX19_03881 0.18 +0.4
136,570 + MPMX19_03881 0.18 +0.8
136,570 + MPMX19_03881 0.18 +0.0
136,570 + MPMX19_03881 0.18 -0.3
136,570 + MPMX19_03881 0.18 -0.7
136,570 + MPMX19_03881 0.18 -1.1
136,570 + MPMX19_03881 0.18 -0.5
136,570 + MPMX19_03881 0.18 -0.6
136,570 + MPMX19_03881 0.18 -1.1
136,570 + MPMX19_03881 0.18 -0.5
136,570 + MPMX19_03881 0.18 -0.8
136,571 - MPMX19_03881 0.18 +0.4
136,571 - MPMX19_03881 0.18 +0.3
136,571 - MPMX19_03881 0.18 -0.4
136,571 - MPMX19_03881 0.18 -0.3
136,571 - MPMX19_03881 0.18 +0.5
136,571 - MPMX19_03881 0.18 -1.1
136,571 - MPMX19_03881 0.18 -1.9
136,571 - MPMX19_03881 0.18 +0.4
136,571 - MPMX19_03881 0.18 -0.3
136,571 - MPMX19_03881 0.18 +0.6
136,708 + MPMX19_03881 0.28 -1.1
136,708 + MPMX19_03881 0.28 -0.1
136,709 - MPMX19_03881 0.28 +0.6
136,709 - MPMX19_03881 0.28 +1.2
136,709 - MPMX19_03881 0.28 -0.6
136,867 + MPMX19_03881 0.40 -0.8
136,867 + MPMX19_03881 0.40 -0.2
136,867 + MPMX19_03881 0.40 +0.5
136,867 + MPMX19_03881 0.40 +0.8
136,867 + MPMX19_03881 0.40 -0.4
136,868 - MPMX19_03881 0.40 -1.0
136,868 - MPMX19_03881 0.40 +0.1
136,868 - MPMX19_03881 0.40 -0.7
136,951 + MPMX19_03881 0.46 -0.5
136,951 + MPMX19_03881 0.46 +1.5
136,951 + MPMX19_03881 0.46 +0.9
136,951 + MPMX19_03881 0.46 +0.6
136,951 + MPMX19_03881 0.46 +0.9
136,951 + MPMX19_03881 0.46 -0.1
136,951 + MPMX19_03881 0.46 +0.5
136,951 + MPMX19_03881 0.46 +0.2
136,952 - MPMX19_03881 0.47 +0.1
136,952 - MPMX19_03881 0.47 +0.2
136,952 - MPMX19_03881 0.47 -0.1
136,952 - MPMX19_03881 0.47 -0.6
136,952 - MPMX19_03881 0.47 -0.3
136,952 - MPMX19_03881 0.47 +0.2
136,952 - MPMX19_03881 0.47 -1.6
136,952 - MPMX19_03881 0.47 -0.2
136,952 - MPMX19_03881 0.47 -0.1
137,011 + MPMX19_03881 0.51 +0.5
137,011 + MPMX19_03881 0.51 -0.4
137,011 + MPMX19_03881 0.51 -0.6
137,011 + MPMX19_03881 0.51 -0.1
137,012 - MPMX19_03881 0.51 +0.7
137,012 - MPMX19_03881 0.51 -0.5
137,012 - MPMX19_03881 0.51 +0.3
137,012 - MPMX19_03881 0.51 -1.2
137,014 + MPMX19_03881 0.51 -1.3
137,014 + MPMX19_03881 0.51 +0.2
137,014 + MPMX19_03881 0.51 +1.4
137,014 + MPMX19_03881 0.51 -2.0
137,014 + MPMX19_03881 0.51 -0.5
137,014 + MPMX19_03881 0.51 -1.1
137,014 + MPMX19_03881 0.51 -1.7
137,015 - MPMX19_03881 0.51 +0.9
137,015 - MPMX19_03881 0.51 +0.1
137,015 - MPMX19_03881 0.51 +1.2
137,015 - MPMX19_03881 0.51 +0.5
137,015 - MPMX19_03881 0.51 -0.5
137,015 - MPMX19_03881 0.51 -1.7
137,218 + MPMX19_03881 0.67 -0.8
137,218 + MPMX19_03881 0.67 +0.3
137,219 - MPMX19_03881 0.67 -0.8
137,311 + MPMX19_03881 0.74 +0.8
137,311 + MPMX19_03881 0.74 -0.3
137,311 + MPMX19_03881 0.74 -0.1
137,311 + MPMX19_03881 0.74 -0.5
137,311 + MPMX19_03881 0.74 -0.9
137,311 + MPMX19_03881 0.74 +0.0
137,311 + MPMX19_03881 0.74 -0.9
137,311 + MPMX19_03881 0.74 +0.5
137,312 - MPMX19_03881 0.74 -0.6
137,312 - MPMX19_03881 0.74 +1.0
137,312 - MPMX19_03881 0.74 -0.3
137,424 + MPMX19_03881 0.82 -0.6
137,424 + MPMX19_03881 0.82 +0.5
137,424 + MPMX19_03881 0.82 -0.1
137,479 + MPMX19_03881 0.86 +0.1
137,479 + MPMX19_03881 0.86 +0.7
137,479 + MPMX19_03881 0.86 -0.1
137,479 + MPMX19_03881 0.86 -0.7
137,480 - MPMX19_03881 0.86 +0.2
137,480 - MPMX19_03881 0.86 -0.8
137,480 - MPMX19_03881 0.86 +0.9
137,480 - MPMX19_03881 0.86 -0.1
137,480 - MPMX19_03881 0.86 -1.6
137,480 - MPMX19_03881 0.86 -1.6
137,480 - MPMX19_03881 0.86 -0.9
138,134 + MPMX19_03882 0.24 +0.7
138,134 + MPMX19_03882 0.24 -0.2
138,134 + MPMX19_03882 0.24 -1.4
138,134 + MPMX19_03882 0.24 -0.0
138,134 + MPMX19_03882 0.24 -0.8
138,135 - MPMX19_03882 0.24 -2.1
138,135 - MPMX19_03882 0.24 -0.1
138,135 - MPMX19_03882 0.24 -0.7
138,135 - MPMX19_03882 0.24 -0.1
138,201 - MPMX19_03882 0.28 -0.1
138,251 + MPMX19_03882 0.30 +0.6
138,252 - MPMX19_03882 0.30 -0.4
138,344 + MPMX19_03882 0.35 -0.1
138,344 + MPMX19_03882 0.35 -2.0
138,345 - MPMX19_03882 0.35 -0.9
138,443 + MPMX19_03882 0.40 -0.3
138,443 + MPMX19_03882 0.40 -1.2
138,443 + MPMX19_03882 0.40 -1.3
138,443 + MPMX19_03882 0.40 -1.8
138,444 - MPMX19_03882 0.40 -1.9
138,444 - MPMX19_03882 0.40 -0.8
138,635 + MPMX19_03882 0.50 -0.0
138,635 + MPMX19_03882 0.50 +0.4
138,635 + MPMX19_03882 0.50 -1.0
138,635 + MPMX19_03882 0.50 -0.6
138,636 - MPMX19_03882 0.51 -1.9
138,636 - MPMX19_03882 0.51 +1.2
138,636 - MPMX19_03882 0.51 -1.1
138,636 - MPMX19_03882 0.51 -1.3
138,636 - MPMX19_03882 0.51 -0.4
138,636 - MPMX19_03882 0.51 -0.6
138,636 - MPMX19_03882 0.51 -1.0
138,636 - MPMX19_03882 0.51 +0.3
138,650 + MPMX19_03882 0.51 -0.4
138,650 + MPMX19_03882 0.51 -0.5
138,650 + MPMX19_03882 0.51 +1.5
138,650 + MPMX19_03882 0.51 -0.7
138,650 + MPMX19_03882 0.51 +1.2
138,650 + MPMX19_03882 0.51 -1.5
138,650 + MPMX19_03882 0.51 -0.4
138,650 + MPMX19_03882 0.51 -0.2
138,650 + MPMX19_03882 0.51 -0.6
138,650 + MPMX19_03882 0.51 +0.3
138,650 + MPMX19_03882 0.51 -1.4
138,651 - MPMX19_03882 0.51 -1.4
138,651 - MPMX19_03882 0.51 -0.6
138,651 - MPMX19_03882 0.51 -0.1
138,651 - MPMX19_03882 0.51 +0.7
138,651 - MPMX19_03882 0.51 -0.9
138,651 - MPMX19_03882 0.51 -2.1
138,651 - MPMX19_03882 0.51 +0.9
138,651 - MPMX19_03882 0.51 -1.1
138,651 - MPMX19_03882 0.51 -1.1
138,651 - MPMX19_03882 0.51 -0.2
138,651 - MPMX19_03882 0.51 -0.3

Or see this region's nucleotide sequence