Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03846

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03844 and MPMX19_03845 are separated by 170 nucleotidesMPMX19_03845 and MPMX19_03846 are separated by 135 nucleotidesMPMX19_03846 and MPMX19_03847 are separated by 133 nucleotides MPMX19_03844: MPMX19_03844 - Protein YrdA, at 81,337 to 81,873 _03844 MPMX19_03845: MPMX19_03845 - Peptidoglycan-associated lipoprotein, at 82,044 to 82,655 _03845 MPMX19_03846: MPMX19_03846 - hypothetical protein, at 82,791 to 83,480 _03846 MPMX19_03847: MPMX19_03847 - HTH-type transcriptional regulatory protein GabR, at 83,614 to 85,131 _03847 Position (kb) 82 83 84Strain fitness (log2 ratio) -2 -1 0 1at 81.820 kb on + strandat 81.820 kb on + strandat 81.820 kb on + strandat 81.822 kb on + strandat 81.822 kb on + strandat 81.856 kb on + strandat 81.856 kb on + strandat 81.856 kb on + strandat 81.856 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.871 kb on + strandat 81.881 kb on + strandat 81.881 kb on + strandat 81.881 kb on + strandat 81.986 kb on + strandat 81.986 kb on + strandat 81.986 kb on + strandat 81.986 kb on + strandat 81.986 kb on + strandat 82.878 kb on - strand, within MPMX19_03846at 82.878 kb on - strand, within MPMX19_03846at 83.098 kb on + strand, within MPMX19_03846at 83.098 kb on + strand, within MPMX19_03846at 83.098 kb on + strand, within MPMX19_03846at 83.099 kb on - strand, within MPMX19_03846at 83.099 kb on - strand, within MPMX19_03846at 83.099 kb on - strand, within MPMX19_03846at 83.701 kb on + strandat 83.702 kb on - strandat 83.818 kb on + strand, within MPMX19_03847at 83.819 kb on - strand, within MPMX19_03847at 83.819 kb on - strand, within MPMX19_03847at 83.842 kb on + strand, within MPMX19_03847at 83.842 kb on + strand, within MPMX19_03847at 83.842 kb on + strand, within MPMX19_03847at 83.842 kb on + strand, within MPMX19_03847at 83.842 kb on + strand, within MPMX19_03847at 83.842 kb on + strand, within MPMX19_03847at 83.842 kb on + strand, within MPMX19_03847at 83.842 kb on + strand, within MPMX19_03847at 83.842 kb on + strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 83.843 kb on - strand, within MPMX19_03847at 84.131 kb on - strand, within MPMX19_03847at 84.160 kb on + strand, within MPMX19_03847at 84.160 kb on + strand, within MPMX19_03847at 84.160 kb on + strand, within MPMX19_03847at 84.160 kb on + strand, within MPMX19_03847at 84.160 kb on + strand, within MPMX19_03847at 84.161 kb on - strand, within MPMX19_03847at 84.161 kb on - strand, within MPMX19_03847at 84.161 kb on - strand, within MPMX19_03847at 84.161 kb on - strand, within MPMX19_03847

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
81,820 + -0.5
81,820 + +0.6
81,820 + +0.8
81,822 + -0.5
81,822 + +0.9
81,856 + +0.3
81,856 + -1.4
81,856 + +0.8
81,856 + -0.3
81,871 + +0.6
81,871 + +1.5
81,871 + -0.4
81,871 + +0.2
81,871 + +0.2
81,871 + -0.7
81,871 + -1.0
81,871 + -0.0
81,871 + +0.2
81,871 + +0.3
81,871 + +0.4
81,881 + -0.6
81,881 + -2.1
81,881 + -1.6
81,986 + +1.0
81,986 + +0.3
81,986 + +0.5
81,986 + -0.7
81,986 + -1.7
82,878 - MPMX19_03846 0.13 +0.3
82,878 - MPMX19_03846 0.13 -2.3
83,098 + MPMX19_03846 0.44 +1.4
83,098 + MPMX19_03846 0.44 -0.4
83,098 + MPMX19_03846 0.44 +0.3
83,099 - MPMX19_03846 0.45 +0.8
83,099 - MPMX19_03846 0.45 -0.1
83,099 - MPMX19_03846 0.45 +1.2
83,701 + -0.1
83,702 - -0.3
83,818 + MPMX19_03847 0.13 -1.0
83,819 - MPMX19_03847 0.14 +0.4
83,819 - MPMX19_03847 0.14 -0.1
83,842 + MPMX19_03847 0.15 -1.1
83,842 + MPMX19_03847 0.15 -0.2
83,842 + MPMX19_03847 0.15 -1.0
83,842 + MPMX19_03847 0.15 -0.3
83,842 + MPMX19_03847 0.15 -0.1
83,842 + MPMX19_03847 0.15 -0.3
83,842 + MPMX19_03847 0.15 -0.8
83,842 + MPMX19_03847 0.15 -0.6
83,842 + MPMX19_03847 0.15 +0.1
83,843 - MPMX19_03847 0.15 +0.2
83,843 - MPMX19_03847 0.15 -0.3
83,843 - MPMX19_03847 0.15 -1.5
83,843 - MPMX19_03847 0.15 -1.7
83,843 - MPMX19_03847 0.15 -0.8
83,843 - MPMX19_03847 0.15 -1.0
83,843 - MPMX19_03847 0.15 -0.8
83,843 - MPMX19_03847 0.15 +0.1
83,843 - MPMX19_03847 0.15 +0.3
83,843 - MPMX19_03847 0.15 -1.5
83,843 - MPMX19_03847 0.15 -0.2
83,843 - MPMX19_03847 0.15 -1.8
83,843 - MPMX19_03847 0.15 +0.0
83,843 - MPMX19_03847 0.15 -0.7
84,131 - MPMX19_03847 0.34 -0.6
84,160 + MPMX19_03847 0.36 +0.0
84,160 + MPMX19_03847 0.36 -1.0
84,160 + MPMX19_03847 0.36 +0.6
84,160 + MPMX19_03847 0.36 -1.5
84,160 + MPMX19_03847 0.36 -0.9
84,161 - MPMX19_03847 0.36 -1.7
84,161 - MPMX19_03847 0.36 -1.0
84,161 - MPMX19_03847 0.36 -1.6
84,161 - MPMX19_03847 0.36 -0.1

Or see this region's nucleotide sequence