Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03824

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03822 and MPMX19_03823 are separated by 24 nucleotidesMPMX19_03823 and MPMX19_03824 are separated by 23 nucleotidesMPMX19_03824 and MPMX19_03825 are separated by 292 nucleotides MPMX19_03822: MPMX19_03822 - Sulfur carrier protein FdhD, at 60,970 to 61,812 _03822 MPMX19_03823: MPMX19_03823 - hypothetical protein, at 61,837 to 62,064 _03823 MPMX19_03824: MPMX19_03824 - hypothetical protein, at 62,088 to 62,837 _03824 MPMX19_03825: MPMX19_03825 - IS5 family transposase IS4811, at 63,130 to 64,074 _03825 Position (kb) 62 63Strain fitness (log2 ratio) -2 -1 0 1 2at 61.138 kb on + strand, within MPMX19_03822at 61.139 kb on - strand, within MPMX19_03822at 61.576 kb on - strand, within MPMX19_03822at 61.576 kb on - strand, within MPMX19_03822at 61.576 kb on - strand, within MPMX19_03822at 61.906 kb on + strand, within MPMX19_03823at 61.906 kb on + strand, within MPMX19_03823at 61.906 kb on + strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 61.907 kb on - strand, within MPMX19_03823at 62.107 kb on + strandat 62.107 kb on + strandat 62.108 kb on - strandat 62.225 kb on - strand, within MPMX19_03824at 62.225 kb on - strand, within MPMX19_03824at 62.225 kb on - strand, within MPMX19_03824at 62.255 kb on + strand, within MPMX19_03824at 62.255 kb on + strand, within MPMX19_03824at 62.255 kb on + strand, within MPMX19_03824at 62.256 kb on - strand, within MPMX19_03824at 62.256 kb on - strand, within MPMX19_03824at 62.256 kb on - strand, within MPMX19_03824at 62.257 kb on + strand, within MPMX19_03824at 62.257 kb on + strand, within MPMX19_03824at 62.257 kb on + strand, within MPMX19_03824at 62.257 kb on + strand, within MPMX19_03824at 62.258 kb on - strand, within MPMX19_03824at 62.258 kb on - strand, within MPMX19_03824at 62.258 kb on - strand, within MPMX19_03824at 62.258 kb on - strand, within MPMX19_03824at 62.323 kb on + strand, within MPMX19_03824at 62.323 kb on + strand, within MPMX19_03824at 62.323 kb on + strand, within MPMX19_03824at 62.324 kb on - strand, within MPMX19_03824at 62.388 kb on - strand, within MPMX19_03824at 62.417 kb on + strand, within MPMX19_03824at 62.418 kb on - strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.419 kb on + strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.420 kb on - strand, within MPMX19_03824at 62.526 kb on + strand, within MPMX19_03824at 62.526 kb on + strand, within MPMX19_03824at 62.526 kb on + strand, within MPMX19_03824at 62.527 kb on - strand, within MPMX19_03824at 62.527 kb on - strand, within MPMX19_03824at 62.529 kb on + strand, within MPMX19_03824at 62.529 kb on + strand, within MPMX19_03824at 62.530 kb on - strand, within MPMX19_03824at 62.530 kb on - strand, within MPMX19_03824at 62.530 kb on - strand, within MPMX19_03824at 62.873 kb on - strandat 62.898 kb on - strandat 62.898 kb on - strandat 62.949 kb on + strandat 62.949 kb on + strandat 62.950 kb on - strandat 62.950 kb on - strandat 63.131 kb on + strandat 63.131 kb on + strandat 63.131 kb on + strandat 63.131 kb on + strandat 63.131 kb on + strandat 63.131 kb on + strandat 63.131 kb on + strandat 63.132 kb on - strandat 63.132 kb on - strandat 63.132 kb on - strandat 63.132 kb on - strandat 63.344 kb on + strand, within MPMX19_03825at 63.345 kb on - strand, within MPMX19_03825

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
61,138 + MPMX19_03822 0.20 +0.2
61,139 - MPMX19_03822 0.20 -0.5
61,576 - MPMX19_03822 0.72 -1.3
61,576 - MPMX19_03822 0.72 -1.7
61,576 - MPMX19_03822 0.72 -0.8
61,906 + MPMX19_03823 0.30 +0.7
61,906 + MPMX19_03823 0.30 +0.2
61,906 + MPMX19_03823 0.30 -0.3
61,907 - MPMX19_03823 0.31 -2.5
61,907 - MPMX19_03823 0.31 +0.6
61,907 - MPMX19_03823 0.31 +0.6
61,907 - MPMX19_03823 0.31 +0.1
61,907 - MPMX19_03823 0.31 -1.4
61,907 - MPMX19_03823 0.31 -0.3
61,907 - MPMX19_03823 0.31 +0.5
61,907 - MPMX19_03823 0.31 -0.7
62,107 + -0.2
62,107 + -0.1
62,108 - -0.5
62,225 - MPMX19_03824 0.18 -0.3
62,225 - MPMX19_03824 0.18 -1.0
62,225 - MPMX19_03824 0.18 -0.4
62,255 + MPMX19_03824 0.22 -0.8
62,255 + MPMX19_03824 0.22 -1.0
62,255 + MPMX19_03824 0.22 +0.1
62,256 - MPMX19_03824 0.22 +0.3
62,256 - MPMX19_03824 0.22 -0.7
62,256 - MPMX19_03824 0.22 -1.6
62,257 + MPMX19_03824 0.23 -0.3
62,257 + MPMX19_03824 0.23 -0.2
62,257 + MPMX19_03824 0.23 -0.4
62,257 + MPMX19_03824 0.23 -0.2
62,258 - MPMX19_03824 0.23 +0.2
62,258 - MPMX19_03824 0.23 +1.3
62,258 - MPMX19_03824 0.23 +0.8
62,258 - MPMX19_03824 0.23 -1.9
62,323 + MPMX19_03824 0.31 -0.9
62,323 + MPMX19_03824 0.31 -1.3
62,323 + MPMX19_03824 0.31 -0.4
62,324 - MPMX19_03824 0.31 +0.5
62,388 - MPMX19_03824 0.40 -1.3
62,417 + MPMX19_03824 0.44 +0.3
62,418 - MPMX19_03824 0.44 +0.2
62,419 + MPMX19_03824 0.44 +1.1
62,419 + MPMX19_03824 0.44 +0.2
62,419 + MPMX19_03824 0.44 -0.6
62,419 + MPMX19_03824 0.44 -0.2
62,419 + MPMX19_03824 0.44 -0.2
62,419 + MPMX19_03824 0.44 -0.7
62,419 + MPMX19_03824 0.44 +0.7
62,420 - MPMX19_03824 0.44 +0.1
62,420 - MPMX19_03824 0.44 +0.2
62,420 - MPMX19_03824 0.44 -0.5
62,420 - MPMX19_03824 0.44 +0.5
62,420 - MPMX19_03824 0.44 -0.1
62,420 - MPMX19_03824 0.44 +1.8
62,526 + MPMX19_03824 0.58 +1.0
62,526 + MPMX19_03824 0.58 -0.9
62,526 + MPMX19_03824 0.58 +0.6
62,527 - MPMX19_03824 0.59 -1.0
62,527 - MPMX19_03824 0.59 +0.7
62,529 + MPMX19_03824 0.59 +0.8
62,529 + MPMX19_03824 0.59 +0.8
62,530 - MPMX19_03824 0.59 +0.4
62,530 - MPMX19_03824 0.59 +0.2
62,530 - MPMX19_03824 0.59 +1.1
62,873 - -0.0
62,898 - +0.1
62,898 - +1.9
62,949 + -0.7
62,949 + -1.1
62,950 - -0.3
62,950 - -2.1
63,131 + -1.5
63,131 + +0.0
63,131 + +0.2
63,131 + +0.5
63,131 + -1.0
63,131 + +0.5
63,131 + -1.1
63,132 - -0.3
63,132 - -0.4
63,132 - -0.3
63,132 - -0.3
63,344 + MPMX19_03825 0.23 +0.3
63,345 - MPMX19_03825 0.23 -1.8

Or see this region's nucleotide sequence