Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03819

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03818 and MPMX19_03819 are separated by 224 nucleotidesMPMX19_03819 and MPMX19_03820 overlap by 4 nucleotides MPMX19_03818: MPMX19_03818 - Hydrogen peroxide-inducible genes activator, at 54,805 to 55,755 _03818 MPMX19_03819: MPMX19_03819 - NADP-reducing hydrogenase subunit HndA, at 55,980 to 56,492 _03819 MPMX19_03820: MPMX19_03820 - hypothetical protein, at 56,489 to 58,069 _03820 Position (kb) 55 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 55.000 kb on + strand, within MPMX19_03818at 55.000 kb on + strand, within MPMX19_03818at 55.000 kb on + strand, within MPMX19_03818at 55.001 kb on - strand, within MPMX19_03818at 55.001 kb on - strand, within MPMX19_03818at 55.001 kb on - strand, within MPMX19_03818at 55.001 kb on - strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.237 kb on + strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.238 kb on - strand, within MPMX19_03818at 55.282 kb on + strand, within MPMX19_03818at 55.282 kb on + strand, within MPMX19_03818at 55.282 kb on + strand, within MPMX19_03818at 55.282 kb on + strand, within MPMX19_03818at 55.282 kb on + strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.283 kb on - strand, within MPMX19_03818at 55.295 kb on - strand, within MPMX19_03818at 55.295 kb on - strand, within MPMX19_03818at 55.295 kb on - strand, within MPMX19_03818at 55.492 kb on + strand, within MPMX19_03818at 55.492 kb on + strand, within MPMX19_03818at 55.492 kb on + strand, within MPMX19_03818at 55.492 kb on + strand, within MPMX19_03818at 55.493 kb on - strand, within MPMX19_03818at 55.493 kb on - strand, within MPMX19_03818at 55.493 kb on - strand, within MPMX19_03818at 55.493 kb on - strand, within MPMX19_03818at 55.493 kb on - strand, within MPMX19_03818at 55.624 kb on + strand, within MPMX19_03818at 55.624 kb on + strand, within MPMX19_03818at 55.624 kb on + strand, within MPMX19_03818at 55.625 kb on - strand, within MPMX19_03818at 55.625 kb on - strand, within MPMX19_03818at 55.625 kb on - strand, within MPMX19_03818at 55.625 kb on - strand, within MPMX19_03818at 56.058 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.139 kb on + strand, within MPMX19_03819at 56.140 kb on - strand, within MPMX19_03819at 56.140 kb on - strand, within MPMX19_03819at 56.140 kb on - strand, within MPMX19_03819at 56.140 kb on - strand, within MPMX19_03819at 56.140 kb on - strand, within MPMX19_03819at 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.639 kb on + strandat 56.640 kb on - strandat 56.640 kb on - strandat 56.640 kb on - strandat 56.640 kb on - strandat 56.640 kb on - strandat 56.640 kb on - strandat 56.687 kb on + strand, within MPMX19_03820at 56.687 kb on + strand, within MPMX19_03820at 56.789 kb on + strand, within MPMX19_03820at 56.789 kb on + strand, within MPMX19_03820at 56.790 kb on - strand, within MPMX19_03820at 56.858 kb on + strand, within MPMX19_03820at 56.858 kb on + strand, within MPMX19_03820at 56.859 kb on - strand, within MPMX19_03820at 57.112 kb on + strand, within MPMX19_03820at 57.112 kb on + strand, within MPMX19_03820at 57.112 kb on + strand, within MPMX19_03820at 57.113 kb on - strand, within MPMX19_03820at 57.113 kb on - strand, within MPMX19_03820at 57.113 kb on - strand, within MPMX19_03820at 57.113 kb on - strand, within MPMX19_03820at 57.113 kb on - strand, within MPMX19_03820at 57.113 kb on - strand, within MPMX19_03820at 57.152 kb on + strand, within MPMX19_03820at 57.153 kb on - strand, within MPMX19_03820at 57.153 kb on - strand, within MPMX19_03820at 57.158 kb on + strand, within MPMX19_03820at 57.158 kb on + strand, within MPMX19_03820at 57.158 kb on + strand, within MPMX19_03820at 57.158 kb on + strand, within MPMX19_03820at 57.158 kb on + strand, within MPMX19_03820at 57.158 kb on + strand, within MPMX19_03820at 57.158 kb on + strand, within MPMX19_03820at 57.158 kb on + strand, within MPMX19_03820at 57.158 kb on + strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.159 kb on - strand, within MPMX19_03820at 57.173 kb on + strand, within MPMX19_03820at 57.218 kb on + strand, within MPMX19_03820at 57.218 kb on + strand, within MPMX19_03820at 57.218 kb on + strand, within MPMX19_03820at 57.219 kb on - strand, within MPMX19_03820at 57.219 kb on - strand, within MPMX19_03820at 57.219 kb on - strand, within MPMX19_03820at 57.299 kb on + strand, within MPMX19_03820at 57.299 kb on + strand, within MPMX19_03820at 57.299 kb on + strand, within MPMX19_03820at 57.299 kb on + strand, within MPMX19_03820at 57.300 kb on - strand, within MPMX19_03820at 57.300 kb on - strand, within MPMX19_03820at 57.300 kb on - strand, within MPMX19_03820at 57.300 kb on - strand, within MPMX19_03820at 57.300 kb on - strand, within MPMX19_03820at 57.300 kb on - strand, within MPMX19_03820at 57.300 kb on - strand, within MPMX19_03820at 57.470 kb on + strand, within MPMX19_03820at 57.470 kb on + strand, within MPMX19_03820at 57.470 kb on + strand, within MPMX19_03820at 57.471 kb on - strand, within MPMX19_03820at 57.471 kb on - strand, within MPMX19_03820at 57.471 kb on - strand, within MPMX19_03820at 57.473 kb on + strand, within MPMX19_03820at 57.473 kb on + strand, within MPMX19_03820at 57.474 kb on - strand, within MPMX19_03820at 57.474 kb on - strand, within MPMX19_03820

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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55,000 + MPMX19_03818 0.21 -0.3
55,000 + MPMX19_03818 0.21 +0.0
55,000 + MPMX19_03818 0.21 +0.4
55,001 - MPMX19_03818 0.21 -0.4
55,001 - MPMX19_03818 0.21 -0.5
55,001 - MPMX19_03818 0.21 +1.6
55,001 - MPMX19_03818 0.21 -0.1
55,237 + MPMX19_03818 0.45 -0.3
55,237 + MPMX19_03818 0.45 +0.4
55,237 + MPMX19_03818 0.45 -0.6
55,237 + MPMX19_03818 0.45 -1.5
55,237 + MPMX19_03818 0.45 -0.3
55,237 + MPMX19_03818 0.45 +0.2
55,237 + MPMX19_03818 0.45 +1.0
55,237 + MPMX19_03818 0.45 -0.1
55,237 + MPMX19_03818 0.45 +0.7
55,237 + MPMX19_03818 0.45 -0.3
55,237 + MPMX19_03818 0.45 -0.4
55,237 + MPMX19_03818 0.45 -2.0
55,238 - MPMX19_03818 0.46 -1.1
55,238 - MPMX19_03818 0.46 +0.6
55,238 - MPMX19_03818 0.46 -2.1
55,238 - MPMX19_03818 0.46 -0.9
55,238 - MPMX19_03818 0.46 -0.3
55,238 - MPMX19_03818 0.46 -1.2
55,238 - MPMX19_03818 0.46 +0.0
55,238 - MPMX19_03818 0.46 -1.2
55,238 - MPMX19_03818 0.46 +1.6
55,282 + MPMX19_03818 0.50 +0.9
55,282 + MPMX19_03818 0.50 -1.3
55,282 + MPMX19_03818 0.50 -1.5
55,282 + MPMX19_03818 0.50 -1.9
55,282 + MPMX19_03818 0.50 -1.7
55,283 - MPMX19_03818 0.50 +0.5
55,283 - MPMX19_03818 0.50 -2.0
55,283 - MPMX19_03818 0.50 -0.6
55,283 - MPMX19_03818 0.50 -1.0
55,283 - MPMX19_03818 0.50 -0.1
55,283 - MPMX19_03818 0.50 +0.0
55,283 - MPMX19_03818 0.50 -1.3
55,295 - MPMX19_03818 0.52 +0.4
55,295 - MPMX19_03818 0.52 +0.9
55,295 - MPMX19_03818 0.52 -2.1
55,492 + MPMX19_03818 0.72 -1.0
55,492 + MPMX19_03818 0.72 -0.1
55,492 + MPMX19_03818 0.72 +0.9
55,492 + MPMX19_03818 0.72 +0.7
55,493 - MPMX19_03818 0.72 -1.3
55,493 - MPMX19_03818 0.72 -0.3
55,493 - MPMX19_03818 0.72 +0.9
55,493 - MPMX19_03818 0.72 -0.1
55,493 - MPMX19_03818 0.72 -1.7
55,624 + MPMX19_03818 0.86 -0.3
55,624 + MPMX19_03818 0.86 -1.5
55,624 + MPMX19_03818 0.86 -0.5
55,625 - MPMX19_03818 0.86 +0.0
55,625 - MPMX19_03818 0.86 -0.1
55,625 - MPMX19_03818 0.86 -0.6
55,625 - MPMX19_03818 0.86 -1.0
56,058 + MPMX19_03819 0.15 -0.4
56,139 + MPMX19_03819 0.31 -0.4
56,139 + MPMX19_03819 0.31 -0.2
56,139 + MPMX19_03819 0.31 -1.1
56,139 + MPMX19_03819 0.31 -0.8
56,139 + MPMX19_03819 0.31 -1.3
56,139 + MPMX19_03819 0.31 -1.1
56,139 + MPMX19_03819 0.31 -0.9
56,139 + MPMX19_03819 0.31 -1.4
56,139 + MPMX19_03819 0.31 -1.1
56,140 - MPMX19_03819 0.31 -1.4
56,140 - MPMX19_03819 0.31 +0.0
56,140 - MPMX19_03819 0.31 +0.0
56,140 - MPMX19_03819 0.31 -0.8
56,140 - MPMX19_03819 0.31 +0.2
56,639 + -1.7
56,639 + +0.2
56,639 + +0.0
56,639 + +2.5
56,639 + -1.0
56,639 + -0.1
56,639 + -0.9
56,639 + -1.4
56,639 + -0.1
56,640 - -0.1
56,640 - -0.7
56,640 - -2.5
56,640 - -0.4
56,640 - -0.6
56,640 - +0.2
56,687 + MPMX19_03820 0.13 -0.6
56,687 + MPMX19_03820 0.13 +0.2
56,789 + MPMX19_03820 0.19 +0.6
56,789 + MPMX19_03820 0.19 -1.1
56,790 - MPMX19_03820 0.19 -1.2
56,858 + MPMX19_03820 0.23 -0.6
56,858 + MPMX19_03820 0.23 -1.2
56,859 - MPMX19_03820 0.23 -1.3
57,112 + MPMX19_03820 0.39 -0.2
57,112 + MPMX19_03820 0.39 +0.6
57,112 + MPMX19_03820 0.39 -0.6
57,113 - MPMX19_03820 0.39 -1.0
57,113 - MPMX19_03820 0.39 -0.1
57,113 - MPMX19_03820 0.39 -0.7
57,113 - MPMX19_03820 0.39 -0.6
57,113 - MPMX19_03820 0.39 -0.6
57,113 - MPMX19_03820 0.39 -1.3
57,152 + MPMX19_03820 0.42 -0.1
57,153 - MPMX19_03820 0.42 +0.1
57,153 - MPMX19_03820 0.42 -1.6
57,158 + MPMX19_03820 0.42 -1.1
57,158 + MPMX19_03820 0.42 -1.7
57,158 + MPMX19_03820 0.42 +0.6
57,158 + MPMX19_03820 0.42 -0.6
57,158 + MPMX19_03820 0.42 -1.7
57,158 + MPMX19_03820 0.42 +0.5
57,158 + MPMX19_03820 0.42 +1.2
57,158 + MPMX19_03820 0.42 +1.5
57,158 + MPMX19_03820 0.42 +0.0
57,159 - MPMX19_03820 0.42 -0.1
57,159 - MPMX19_03820 0.42 +0.1
57,159 - MPMX19_03820 0.42 -1.0
57,159 - MPMX19_03820 0.42 -2.1
57,159 - MPMX19_03820 0.42 +0.8
57,159 - MPMX19_03820 0.42 -0.1
57,159 - MPMX19_03820 0.42 -1.5
57,159 - MPMX19_03820 0.42 -0.8
57,159 - MPMX19_03820 0.42 -1.6
57,159 - MPMX19_03820 0.42 +0.3
57,159 - MPMX19_03820 0.42 -1.0
57,159 - MPMX19_03820 0.42 -0.5
57,159 - MPMX19_03820 0.42 -0.4
57,159 - MPMX19_03820 0.42 +0.0
57,159 - MPMX19_03820 0.42 +0.2
57,159 - MPMX19_03820 0.42 -0.6
57,159 - MPMX19_03820 0.42 -0.1
57,159 - MPMX19_03820 0.42 +0.0
57,173 + MPMX19_03820 0.43 -0.3
57,218 + MPMX19_03820 0.46 +0.6
57,218 + MPMX19_03820 0.46 -0.8
57,218 + MPMX19_03820 0.46 -0.2
57,219 - MPMX19_03820 0.46 -1.2
57,219 - MPMX19_03820 0.46 -0.3
57,219 - MPMX19_03820 0.46 -0.2
57,299 + MPMX19_03820 0.51 -0.5
57,299 + MPMX19_03820 0.51 -1.8
57,299 + MPMX19_03820 0.51 -3.2
57,299 + MPMX19_03820 0.51 +0.3
57,300 - MPMX19_03820 0.51 -2.1
57,300 - MPMX19_03820 0.51 +0.9
57,300 - MPMX19_03820 0.51 -0.7
57,300 - MPMX19_03820 0.51 -0.0
57,300 - MPMX19_03820 0.51 +1.9
57,300 - MPMX19_03820 0.51 +0.2
57,300 - MPMX19_03820 0.51 -0.5
57,470 + MPMX19_03820 0.62 +0.2
57,470 + MPMX19_03820 0.62 -1.1
57,470 + MPMX19_03820 0.62 +0.0
57,471 - MPMX19_03820 0.62 -1.0
57,471 - MPMX19_03820 0.62 -1.1
57,471 - MPMX19_03820 0.62 -0.7
57,473 + MPMX19_03820 0.62 -1.0
57,473 + MPMX19_03820 0.62 +0.2
57,474 - MPMX19_03820 0.62 -3.0
57,474 - MPMX19_03820 0.62 +0.2

Or see this region's nucleotide sequence