Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03814 and MPMX19_03815 are separated by 11 nucleotides MPMX19_03815 and MPMX19_03816 are separated by 89 nucleotides MPMX19_03816 and MPMX19_03817 are separated by 172 nucleotides
MPMX19_03814: MPMX19_03814 - hypothetical protein, at 51,338 to 52,486
_03814
MPMX19_03815: MPMX19_03815 - hypothetical protein, at 52,498 to 52,992
_03815
MPMX19_03816: MPMX19_03816 - hypothetical protein, at 53,082 to 53,720
_03816
MPMX19_03817: MPMX19_03817 - 6-deoxy-6-sulfogluconolactonase, at 53,893 to 54,786
_03817
Position (kb) 53
54 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 52.117 kb on + strand, within MPMX19_03814 at 52.117 kb on + strand, within MPMX19_03814 at 52.117 kb on + strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.118 kb on - strand, within MPMX19_03814 at 52.184 kb on + strand, within MPMX19_03814 at 52.185 kb on - strand, within MPMX19_03814 at 52.185 kb on - strand, within MPMX19_03814 at 52.232 kb on + strand, within MPMX19_03814 at 52.233 kb on - strand, within MPMX19_03814 at 52.233 kb on - strand, within MPMX19_03814 at 52.233 kb on - strand, within MPMX19_03814 at 52.258 kb on + strand, within MPMX19_03814 at 52.259 kb on - strand, within MPMX19_03814 at 52.259 kb on - strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.361 kb on + strand, within MPMX19_03814 at 52.362 kb on - strand, within MPMX19_03814 at 52.362 kb on - strand, within MPMX19_03814 at 52.362 kb on - strand, within MPMX19_03814 at 52.363 kb on + strand, within MPMX19_03814 at 52.364 kb on - strand, within MPMX19_03814 at 52.386 kb on - strand at 52.386 kb on - strand at 52.386 kb on - strand at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.558 kb on + strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.559 kb on - strand, within MPMX19_03815 at 52.673 kb on - strand, within MPMX19_03815 at 52.673 kb on - strand, within MPMX19_03815 at 52.708 kb on - strand, within MPMX19_03815 at 52.708 kb on - strand, within MPMX19_03815 at 52.757 kb on - strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.920 kb on + strand, within MPMX19_03815 at 52.921 kb on - strand, within MPMX19_03815 at 52.921 kb on - strand, within MPMX19_03815 at 52.997 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.009 kb on + strand at 53.010 kb on - strand at 53.010 kb on - strand at 53.010 kb on - strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.058 kb on + strand at 53.632 kb on - strand, within MPMX19_03816 at 53.632 kb on - strand, within MPMX19_03816 at 53.646 kb on + strand, within MPMX19_03816 at 53.646 kb on + strand, within MPMX19_03816 at 53.646 kb on + strand, within MPMX19_03816 at 53.655 kb on + strand, within MPMX19_03816 at 54.373 kb on + strand, within MPMX19_03817 at 54.416 kb on - strand, within MPMX19_03817 at 54.526 kb on + strand, within MPMX19_03817 at 54.527 kb on - strand, within MPMX19_03817 at 54.541 kb on + strand, within MPMX19_03817 at 54.659 kb on - strand, within MPMX19_03817
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 52,117 + MPMX19_03814 0.68 +0.9 52,117 + MPMX19_03814 0.68 -1.3 52,117 + MPMX19_03814 0.68 -0.6 52,118 - MPMX19_03814 0.68 +0.2 52,118 - MPMX19_03814 0.68 -0.4 52,118 - MPMX19_03814 0.68 -0.6 52,118 - MPMX19_03814 0.68 -1.3 52,118 - MPMX19_03814 0.68 +0.0 52,118 - MPMX19_03814 0.68 +0.1 52,118 - MPMX19_03814 0.68 +1.4 52,118 - MPMX19_03814 0.68 +1.0 52,118 - MPMX19_03814 0.68 -1.6 52,184 + MPMX19_03814 0.74 -1.1 52,185 - MPMX19_03814 0.74 -1.7 52,185 - MPMX19_03814 0.74 +3.2 52,232 + MPMX19_03814 0.78 -0.7 52,233 - MPMX19_03814 0.78 +0.4 52,233 - MPMX19_03814 0.78 +0.1 52,233 - MPMX19_03814 0.78 -1.1 52,258 + MPMX19_03814 0.80 -0.3 52,259 - MPMX19_03814 0.80 -2.2 52,259 - MPMX19_03814 0.80 -0.9 52,361 + MPMX19_03814 0.89 +0.6 52,361 + MPMX19_03814 0.89 -0.2 52,361 + MPMX19_03814 0.89 -0.4 52,361 + MPMX19_03814 0.89 -0.7 52,361 + MPMX19_03814 0.89 +0.5 52,362 - MPMX19_03814 0.89 -1.6 52,362 - MPMX19_03814 0.89 -1.3 52,362 - MPMX19_03814 0.89 +1.6 52,363 + MPMX19_03814 0.89 -1.0 52,364 - MPMX19_03814 0.89 +0.9 52,386 - +0.1 52,386 - -1.3 52,386 - +0.4 52,558 + MPMX19_03815 0.12 +0.2 52,558 + MPMX19_03815 0.12 -1.5 52,558 + MPMX19_03815 0.12 +0.4 52,558 + MPMX19_03815 0.12 -1.4 52,558 + MPMX19_03815 0.12 -1.5 52,559 - MPMX19_03815 0.12 -0.0 52,559 - MPMX19_03815 0.12 -0.5 52,559 - MPMX19_03815 0.12 -2.5 52,559 - MPMX19_03815 0.12 -1.5 52,559 - MPMX19_03815 0.12 +0.6 52,559 - MPMX19_03815 0.12 +0.8 52,673 - MPMX19_03815 0.35 +0.2 52,673 - MPMX19_03815 0.35 +0.0 52,708 - MPMX19_03815 0.42 -0.7 52,708 - MPMX19_03815 0.42 +0.3 52,757 - MPMX19_03815 0.52 -0.4 52,920 + MPMX19_03815 0.85 +1.0 52,920 + MPMX19_03815 0.85 +0.6 52,920 + MPMX19_03815 0.85 -0.5 52,920 + MPMX19_03815 0.85 +0.2 52,920 + MPMX19_03815 0.85 -0.6 52,920 + MPMX19_03815 0.85 -2.4 52,921 - MPMX19_03815 0.85 -0.9 52,921 - MPMX19_03815 0.85 -1.3 52,997 + +1.2 53,009 + +0.4 53,009 + -0.3 53,009 + +1.2 53,009 + -0.7 53,009 + -0.1 53,009 + -1.5 53,010 - -0.1 53,010 - +0.1 53,010 - -1.3 53,058 + -0.3 53,058 + +1.0 53,058 + -0.3 53,058 + +0.4 53,058 + -1.0 53,058 + -0.9 53,058 + +1.2 53,632 - MPMX19_03816 0.86 -0.1 53,632 - MPMX19_03816 0.86 -0.4 53,646 + MPMX19_03816 0.88 +0.2 53,646 + MPMX19_03816 0.88 +1.0 53,646 + MPMX19_03816 0.88 -1.1 53,655 + MPMX19_03816 0.90 +1.0 54,373 + MPMX19_03817 0.54 +0.6 54,416 - MPMX19_03817 0.59 +1.2 54,526 + MPMX19_03817 0.71 -0.6 54,527 - MPMX19_03817 0.71 +0.0 54,541 + MPMX19_03817 0.72 +0.6 54,659 - MPMX19_03817 0.86 +0.2
Or see this region's nucleotide sequence