Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03808

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03807 and MPMX19_03808 are separated by 29 nucleotidesMPMX19_03808 and MPMX19_03809 are separated by 349 nucleotides MPMX19_03807: MPMX19_03807 - hypothetical protein, at 39,186 to 40,433 _03807 MPMX19_03808: MPMX19_03808 - hypothetical protein, at 40,463 to 40,831 _03808 MPMX19_03809: MPMX19_03809 - hypothetical protein, at 41,181 to 47,519 _03809 Position (kb) 40 41Strain fitness (log2 ratio) -2 -1 0 1at 39.553 kb on + strand, within MPMX19_03807at 39.553 kb on + strand, within MPMX19_03807at 39.554 kb on - strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.558 kb on + strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.559 kb on - strand, within MPMX19_03807at 39.576 kb on + strand, within MPMX19_03807at 39.577 kb on - strand, within MPMX19_03807at 39.577 kb on - strand, within MPMX19_03807at 39.684 kb on + strand, within MPMX19_03807at 39.684 kb on + strand, within MPMX19_03807at 39.685 kb on - strand, within MPMX19_03807at 39.685 kb on - strand, within MPMX19_03807at 39.685 kb on - strand, within MPMX19_03807at 39.685 kb on - strand, within MPMX19_03807at 39.685 kb on - strand, within MPMX19_03807at 39.708 kb on - strand, within MPMX19_03807at 39.708 kb on - strand, within MPMX19_03807at 39.861 kb on + strand, within MPMX19_03807at 39.861 kb on + strand, within MPMX19_03807at 39.861 kb on + strand, within MPMX19_03807at 39.861 kb on + strand, within MPMX19_03807at 39.861 kb on + strand, within MPMX19_03807at 39.861 kb on + strand, within MPMX19_03807at 39.861 kb on + strand, within MPMX19_03807at 39.861 kb on + strand, within MPMX19_03807at 39.861 kb on + strand, within MPMX19_03807at 39.861 kb on + strand, within MPMX19_03807at 39.862 kb on - strand, within MPMX19_03807at 39.862 kb on - strand, within MPMX19_03807at 39.862 kb on - strand, within MPMX19_03807at 39.862 kb on - strand, within MPMX19_03807at 39.862 kb on - strand, within MPMX19_03807at 39.862 kb on - strand, within MPMX19_03807at 39.862 kb on - strand, within MPMX19_03807at 39.862 kb on - strand, within MPMX19_03807at 39.862 kb on - strand, within MPMX19_03807at 39.862 kb on - strand, within MPMX19_03807at 39.862 kb on - strand, within MPMX19_03807at 39.885 kb on + strand, within MPMX19_03807at 39.886 kb on - strand, within MPMX19_03807at 40.128 kb on + strand, within MPMX19_03807at 40.129 kb on - strand, within MPMX19_03807at 40.129 kb on - strand, within MPMX19_03807at 40.129 kb on - strand, within MPMX19_03807at 40.129 kb on - strand, within MPMX19_03807at 40.129 kb on - strand, within MPMX19_03807at 40.129 kb on - strand, within MPMX19_03807at 40.511 kb on + strand, within MPMX19_03808at 40.511 kb on + strand, within MPMX19_03808at 40.511 kb on + strand, within MPMX19_03808at 40.511 kb on + strand, within MPMX19_03808at 40.511 kb on + strand, within MPMX19_03808at 40.511 kb on + strand, within MPMX19_03808at 40.511 kb on + strand, within MPMX19_03808at 40.511 kb on + strand, within MPMX19_03808at 40.511 kb on + strand, within MPMX19_03808at 40.512 kb on - strand, within MPMX19_03808at 40.512 kb on - strand, within MPMX19_03808at 40.512 kb on - strand, within MPMX19_03808at 40.525 kb on - strand, within MPMX19_03808at 40.656 kb on + strand, within MPMX19_03808at 40.656 kb on + strand, within MPMX19_03808at 40.657 kb on - strand, within MPMX19_03808at 40.657 kb on - strand, within MPMX19_03808at 40.657 kb on - strand, within MPMX19_03808at 40.657 kb on - strand, within MPMX19_03808at 40.763 kb on + strand, within MPMX19_03808at 40.763 kb on + strand, within MPMX19_03808at 40.763 kb on + strand, within MPMX19_03808at 40.763 kb on + strand, within MPMX19_03808at 40.763 kb on + strand, within MPMX19_03808at 40.763 kb on + strand, within MPMX19_03808at 40.764 kb on - strand, within MPMX19_03808at 40.764 kb on - strand, within MPMX19_03808at 40.764 kb on - strand, within MPMX19_03808at 40.764 kb on - strand, within MPMX19_03808at 40.764 kb on - strand, within MPMX19_03808at 40.764 kb on - strand, within MPMX19_03808at 40.764 kb on - strand, within MPMX19_03808at 40.764 kb on - strand, within MPMX19_03808at 40.790 kb on + strand, within MPMX19_03808at 40.791 kb on - strand, within MPMX19_03808at 40.791 kb on - strand, within MPMX19_03808at 40.829 kb on + strandat 40.829 kb on + strandat 40.829 kb on + strandat 40.829 kb on + strandat 40.829 kb on + strandat 40.829 kb on + strandat 40.829 kb on + strandat 40.829 kb on + strandat 40.830 kb on - strandat 40.830 kb on - strandat 40.830 kb on - strandat 40.830 kb on - strandat 40.830 kb on - strandat 40.830 kb on - strandat 40.948 kb on + strandat 40.948 kb on + strandat 40.948 kb on + strandat 40.948 kb on + strandat 40.948 kb on + strandat 40.949 kb on - strandat 40.949 kb on - strandat 40.949 kb on - strandat 40.949 kb on - strandat 41.050 kb on + strandat 41.051 kb on - strandat 41.051 kb on - strandat 41.521 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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39,553 + MPMX19_03807 0.29 -1.4
39,553 + MPMX19_03807 0.29 +0.8
39,554 - MPMX19_03807 0.29 -0.1
39,558 + MPMX19_03807 0.30 -0.3
39,558 + MPMX19_03807 0.30 +0.2
39,558 + MPMX19_03807 0.30 -1.3
39,558 + MPMX19_03807 0.30 -0.7
39,558 + MPMX19_03807 0.30 -2.0
39,558 + MPMX19_03807 0.30 +0.9
39,558 + MPMX19_03807 0.30 +0.3
39,559 - MPMX19_03807 0.30 +1.2
39,559 - MPMX19_03807 0.30 -0.9
39,559 - MPMX19_03807 0.30 -1.7
39,559 - MPMX19_03807 0.30 -0.6
39,559 - MPMX19_03807 0.30 -1.9
39,559 - MPMX19_03807 0.30 -0.5
39,559 - MPMX19_03807 0.30 -2.7
39,559 - MPMX19_03807 0.30 +0.0
39,559 - MPMX19_03807 0.30 -1.3
39,559 - MPMX19_03807 0.30 +0.7
39,576 + MPMX19_03807 0.31 -1.5
39,577 - MPMX19_03807 0.31 -0.4
39,577 - MPMX19_03807 0.31 -1.4
39,684 + MPMX19_03807 0.40 +0.2
39,684 + MPMX19_03807 0.40 -2.2
39,685 - MPMX19_03807 0.40 -1.6
39,685 - MPMX19_03807 0.40 -0.3
39,685 - MPMX19_03807 0.40 -0.6
39,685 - MPMX19_03807 0.40 +0.5
39,685 - MPMX19_03807 0.40 +0.5
39,708 - MPMX19_03807 0.42 -1.5
39,708 - MPMX19_03807 0.42 -1.3
39,861 + MPMX19_03807 0.54 -1.5
39,861 + MPMX19_03807 0.54 -0.5
39,861 + MPMX19_03807 0.54 +0.3
39,861 + MPMX19_03807 0.54 +0.2
39,861 + MPMX19_03807 0.54 -0.4
39,861 + MPMX19_03807 0.54 +0.7
39,861 + MPMX19_03807 0.54 -1.1
39,861 + MPMX19_03807 0.54 -2.1
39,861 + MPMX19_03807 0.54 -1.6
39,861 + MPMX19_03807 0.54 +1.6
39,862 - MPMX19_03807 0.54 +0.3
39,862 - MPMX19_03807 0.54 -1.2
39,862 - MPMX19_03807 0.54 -0.8
39,862 - MPMX19_03807 0.54 -1.6
39,862 - MPMX19_03807 0.54 -0.5
39,862 - MPMX19_03807 0.54 -1.3
39,862 - MPMX19_03807 0.54 -1.5
39,862 - MPMX19_03807 0.54 -1.1
39,862 - MPMX19_03807 0.54 -1.0
39,862 - MPMX19_03807 0.54 -0.1
39,862 - MPMX19_03807 0.54 +0.3
39,885 + MPMX19_03807 0.56 +0.6
39,886 - MPMX19_03807 0.56 -0.4
40,128 + MPMX19_03807 0.75 -2.2
40,129 - MPMX19_03807 0.76 -0.8
40,129 - MPMX19_03807 0.76 +0.2
40,129 - MPMX19_03807 0.76 -1.0
40,129 - MPMX19_03807 0.76 -1.7
40,129 - MPMX19_03807 0.76 +0.8
40,129 - MPMX19_03807 0.76 -0.2
40,511 + MPMX19_03808 0.13 +1.2
40,511 + MPMX19_03808 0.13 +0.0
40,511 + MPMX19_03808 0.13 -1.0
40,511 + MPMX19_03808 0.13 -1.1
40,511 + MPMX19_03808 0.13 -1.0
40,511 + MPMX19_03808 0.13 -0.7
40,511 + MPMX19_03808 0.13 +0.2
40,511 + MPMX19_03808 0.13 -1.4
40,511 + MPMX19_03808 0.13 +0.5
40,512 - MPMX19_03808 0.13 -1.3
40,512 - MPMX19_03808 0.13 -0.5
40,512 - MPMX19_03808 0.13 -1.6
40,525 - MPMX19_03808 0.17 -1.0
40,656 + MPMX19_03808 0.52 +0.5
40,656 + MPMX19_03808 0.52 -0.7
40,657 - MPMX19_03808 0.53 -0.5
40,657 - MPMX19_03808 0.53 +0.5
40,657 - MPMX19_03808 0.53 +0.3
40,657 - MPMX19_03808 0.53 -1.1
40,763 + MPMX19_03808 0.81 -0.6
40,763 + MPMX19_03808 0.81 -0.6
40,763 + MPMX19_03808 0.81 +0.6
40,763 + MPMX19_03808 0.81 -0.4
40,763 + MPMX19_03808 0.81 -0.5
40,763 + MPMX19_03808 0.81 +1.0
40,764 - MPMX19_03808 0.82 +0.6
40,764 - MPMX19_03808 0.82 +1.2
40,764 - MPMX19_03808 0.82 +0.2
40,764 - MPMX19_03808 0.82 +0.6
40,764 - MPMX19_03808 0.82 -1.5
40,764 - MPMX19_03808 0.82 -0.1
40,764 - MPMX19_03808 0.82 -0.3
40,764 - MPMX19_03808 0.82 +0.4
40,790 + MPMX19_03808 0.89 -0.5
40,791 - MPMX19_03808 0.89 +0.4
40,791 - MPMX19_03808 0.89 -0.7
40,829 + -1.3
40,829 + -0.7
40,829 + +0.3
40,829 + -1.5
40,829 + -0.5
40,829 + -0.3
40,829 + -0.4
40,829 + +0.2
40,830 - -1.6
40,830 - -0.8
40,830 - -0.3
40,830 - -1.7
40,830 - -1.1
40,830 - -0.1
40,948 + -0.1
40,948 + -1.1
40,948 + +1.6
40,948 + -0.5
40,948 + +0.8
40,949 - -1.5
40,949 - -1.5
40,949 - -0.3
40,949 - -0.9
41,050 + -0.1
41,051 - +0.2
41,051 - +0.2
41,521 + -0.1

Or see this region's nucleotide sequence