Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03799

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03798 and MPMX19_03799 are separated by 383 nucleotidesMPMX19_03799 and MPMX19_03800 are separated by 13 nucleotidesMPMX19_03800 and MPMX19_03801 are separated by 9 nucleotides MPMX19_03798: MPMX19_03798 - hypothetical protein, at 33,462 to 34,343 _03798 MPMX19_03799: MPMX19_03799 - hypothetical protein, at 34,727 to 35,869 _03799 MPMX19_03800: MPMX19_03800 - hypothetical protein, at 35,883 to 36,302 _03800 MPMX19_03801: MPMX19_03801 - hypothetical protein, at 36,312 to 37,238 _03801 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 33.792 kb on + strand, within MPMX19_03798at 33.792 kb on + strand, within MPMX19_03798at 33.795 kb on - strand, within MPMX19_03798at 33.795 kb on - strand, within MPMX19_03798at 33.804 kb on + strand, within MPMX19_03798at 33.805 kb on - strand, within MPMX19_03798at 33.807 kb on - strand, within MPMX19_03798at 33.826 kb on + strand, within MPMX19_03798at 33.983 kb on + strand, within MPMX19_03798at 34.347 kb on + strandat 34.404 kb on + strandat 34.412 kb on + strandat 34.413 kb on - strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.414 kb on + strandat 34.415 kb on - strandat 34.415 kb on - strandat 34.569 kb on + strandat 34.570 kb on - strandat 34.570 kb on - strandat 34.651 kb on + strandat 34.652 kb on - strandat 34.652 kb on - strandat 34.652 kb on - strandat 34.652 kb on - strandat 34.654 kb on - strandat 34.654 kb on - strandat 34.654 kb on - strandat 34.654 kb on - strandat 34.685 kb on + strandat 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.847 kb on + strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.848 kb on - strand, within MPMX19_03799at 34.849 kb on - strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.910 kb on + strand, within MPMX19_03799at 34.911 kb on - strand, within MPMX19_03799at 34.911 kb on - strand, within MPMX19_03799at 34.911 kb on - strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.075 kb on + strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.076 kb on - strand, within MPMX19_03799at 35.246 kb on + strand, within MPMX19_03799at 35.246 kb on + strand, within MPMX19_03799at 35.246 kb on + strand, within MPMX19_03799at 35.247 kb on - strand, within MPMX19_03799at 35.247 kb on - strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.389 kb on + strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.390 kb on - strand, within MPMX19_03799at 35.759 kb on + strandat 35.759 kb on + strandat 35.760 kb on - strandat 35.760 kb on - strandat 35.760 kb on - strandat 35.760 kb on - strandat 35.760 kb on - strandat 35.834 kb on + strandat 35.835 kb on - strandat 35.896 kb on + strandat 35.897 kb on - strandat 36.012 kb on + strand, within MPMX19_03800at 36.012 kb on + strand, within MPMX19_03800at 36.012 kb on + strand, within MPMX19_03800at 36.012 kb on + strand, within MPMX19_03800at 36.012 kb on + strand, within MPMX19_03800at 36.301 kb on - strandat 36.301 kb on - strandat 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.480 kb on + strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.481 kb on - strand, within MPMX19_03801at 36.531 kb on + strand, within MPMX19_03801at 36.532 kb on - strand, within MPMX19_03801at 36.681 kb on + strand, within MPMX19_03801at 36.681 kb on + strand, within MPMX19_03801at 36.681 kb on + strand, within MPMX19_03801at 36.717 kb on + strand, within MPMX19_03801at 36.717 kb on + strand, within MPMX19_03801at 36.717 kb on + strand, within MPMX19_03801at 36.717 kb on + strand, within MPMX19_03801at 36.718 kb on - strand, within MPMX19_03801at 36.718 kb on - strand, within MPMX19_03801at 36.825 kb on - strand, within MPMX19_03801

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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33,792 + MPMX19_03798 0.37 -0.4
33,792 + MPMX19_03798 0.37 -0.6
33,795 - MPMX19_03798 0.38 -0.1
33,795 - MPMX19_03798 0.38 -1.2
33,804 + MPMX19_03798 0.39 -0.1
33,805 - MPMX19_03798 0.39 +0.0
33,807 - MPMX19_03798 0.39 -0.4
33,826 + MPMX19_03798 0.41 -0.3
33,983 + MPMX19_03798 0.59 +0.6
34,347 + -0.3
34,404 + -0.1
34,412 + -0.6
34,413 - -1.6
34,414 + -0.8
34,414 + -1.0
34,414 + -0.9
34,414 + +1.2
34,414 + -1.3
34,414 + +0.6
34,414 + -1.3
34,414 + -0.7
34,415 - -0.1
34,415 - -0.1
34,569 + -1.6
34,570 - -1.5
34,570 - -0.8
34,651 + -0.8
34,652 - +0.0
34,652 - -0.3
34,652 - -0.9
34,652 - -1.2
34,654 - +0.6
34,654 - -0.4
34,654 - -0.7
34,654 - -1.4
34,685 + -0.4
34,847 + MPMX19_03799 0.10 -0.5
34,847 + MPMX19_03799 0.10 -0.3
34,847 + MPMX19_03799 0.10 -0.8
34,847 + MPMX19_03799 0.10 +1.2
34,847 + MPMX19_03799 0.10 +0.4
34,847 + MPMX19_03799 0.10 -0.4
34,847 + MPMX19_03799 0.10 -1.7
34,847 + MPMX19_03799 0.10 -0.3
34,847 + MPMX19_03799 0.10 -0.5
34,848 - MPMX19_03799 0.11 -1.1
34,848 - MPMX19_03799 0.11 -1.7
34,848 - MPMX19_03799 0.11 -0.2
34,848 - MPMX19_03799 0.11 -1.1
34,848 - MPMX19_03799 0.11 -1.1
34,848 - MPMX19_03799 0.11 -0.4
34,848 - MPMX19_03799 0.11 +0.3
34,848 - MPMX19_03799 0.11 -0.5
34,848 - MPMX19_03799 0.11 +0.4
34,848 - MPMX19_03799 0.11 +0.2
34,848 - MPMX19_03799 0.11 -1.0
34,848 - MPMX19_03799 0.11 -0.1
34,848 - MPMX19_03799 0.11 -0.6
34,848 - MPMX19_03799 0.11 -2.6
34,848 - MPMX19_03799 0.11 +0.6
34,848 - MPMX19_03799 0.11 -0.2
34,848 - MPMX19_03799 0.11 -2.1
34,848 - MPMX19_03799 0.11 +1.6
34,848 - MPMX19_03799 0.11 -2.4
34,848 - MPMX19_03799 0.11 -0.8
34,849 - MPMX19_03799 0.11 +0.9
34,910 + MPMX19_03799 0.16 -2.5
34,910 + MPMX19_03799 0.16 +0.3
34,910 + MPMX19_03799 0.16 +0.3
34,910 + MPMX19_03799 0.16 -0.9
34,910 + MPMX19_03799 0.16 -2.5
34,910 + MPMX19_03799 0.16 +0.1
34,910 + MPMX19_03799 0.16 -0.3
34,911 - MPMX19_03799 0.16 +0.4
34,911 - MPMX19_03799 0.16 +0.1
34,911 - MPMX19_03799 0.16 -1.9
35,075 + MPMX19_03799 0.30 +0.1
35,075 + MPMX19_03799 0.30 +0.6
35,075 + MPMX19_03799 0.30 -0.1
35,075 + MPMX19_03799 0.30 -0.2
35,075 + MPMX19_03799 0.30 -0.6
35,075 + MPMX19_03799 0.30 -0.4
35,075 + MPMX19_03799 0.30 -0.6
35,075 + MPMX19_03799 0.30 +0.3
35,075 + MPMX19_03799 0.30 -1.5
35,075 + MPMX19_03799 0.30 -1.4
35,076 - MPMX19_03799 0.31 +0.4
35,076 - MPMX19_03799 0.31 -0.6
35,076 - MPMX19_03799 0.31 -1.2
35,076 - MPMX19_03799 0.31 +0.9
35,076 - MPMX19_03799 0.31 -1.3
35,076 - MPMX19_03799 0.31 +1.2
35,076 - MPMX19_03799 0.31 -1.6
35,076 - MPMX19_03799 0.31 -1.3
35,076 - MPMX19_03799 0.31 +0.1
35,246 + MPMX19_03799 0.45 +0.0
35,246 + MPMX19_03799 0.45 -0.3
35,246 + MPMX19_03799 0.45 -0.8
35,247 - MPMX19_03799 0.45 -0.4
35,247 - MPMX19_03799 0.45 -1.6
35,389 + MPMX19_03799 0.58 +0.6
35,389 + MPMX19_03799 0.58 -1.5
35,389 + MPMX19_03799 0.58 -1.6
35,389 + MPMX19_03799 0.58 -1.5
35,389 + MPMX19_03799 0.58 +0.1
35,389 + MPMX19_03799 0.58 +0.6
35,389 + MPMX19_03799 0.58 +0.6
35,389 + MPMX19_03799 0.58 +1.0
35,389 + MPMX19_03799 0.58 -0.6
35,389 + MPMX19_03799 0.58 -0.3
35,389 + MPMX19_03799 0.58 -0.3
35,389 + MPMX19_03799 0.58 -0.5
35,389 + MPMX19_03799 0.58 -0.8
35,389 + MPMX19_03799 0.58 +0.0
35,389 + MPMX19_03799 0.58 -0.9
35,390 - MPMX19_03799 0.58 -0.1
35,390 - MPMX19_03799 0.58 -1.3
35,390 - MPMX19_03799 0.58 -1.7
35,390 - MPMX19_03799 0.58 +0.7
35,390 - MPMX19_03799 0.58 +0.2
35,390 - MPMX19_03799 0.58 -0.6
35,390 - MPMX19_03799 0.58 -1.0
35,390 - MPMX19_03799 0.58 +0.5
35,390 - MPMX19_03799 0.58 +1.0
35,390 - MPMX19_03799 0.58 -0.3
35,390 - MPMX19_03799 0.58 -0.6
35,390 - MPMX19_03799 0.58 +0.0
35,390 - MPMX19_03799 0.58 +1.6
35,390 - MPMX19_03799 0.58 +1.0
35,390 - MPMX19_03799 0.58 -0.4
35,390 - MPMX19_03799 0.58 -2.3
35,759 + +0.7
35,759 + -1.6
35,760 - +1.6
35,760 - -1.6
35,760 - -1.6
35,760 - -0.3
35,760 - -0.7
35,834 + -0.6
35,835 - -1.0
35,896 + -0.5
35,897 - -0.4
36,012 + MPMX19_03800 0.31 -1.0
36,012 + MPMX19_03800 0.31 -0.1
36,012 + MPMX19_03800 0.31 +0.2
36,012 + MPMX19_03800 0.31 -1.2
36,012 + MPMX19_03800 0.31 -1.0
36,301 - +0.1
36,301 - +0.0
36,480 + MPMX19_03801 0.18 -1.3
36,480 + MPMX19_03801 0.18 +0.4
36,480 + MPMX19_03801 0.18 +1.1
36,480 + MPMX19_03801 0.18 -0.2
36,480 + MPMX19_03801 0.18 -0.1
36,480 + MPMX19_03801 0.18 +0.2
36,480 + MPMX19_03801 0.18 -1.0
36,481 - MPMX19_03801 0.18 -1.1
36,481 - MPMX19_03801 0.18 -0.1
36,481 - MPMX19_03801 0.18 -2.0
36,481 - MPMX19_03801 0.18 -0.6
36,481 - MPMX19_03801 0.18 -1.1
36,481 - MPMX19_03801 0.18 -0.9
36,481 - MPMX19_03801 0.18 -0.3
36,481 - MPMX19_03801 0.18 -1.7
36,531 + MPMX19_03801 0.24 -0.3
36,532 - MPMX19_03801 0.24 -0.1
36,681 + MPMX19_03801 0.40 -0.2
36,681 + MPMX19_03801 0.40 +0.1
36,681 + MPMX19_03801 0.40 -1.9
36,717 + MPMX19_03801 0.44 +2.2
36,717 + MPMX19_03801 0.44 +0.6
36,717 + MPMX19_03801 0.44 +0.0
36,717 + MPMX19_03801 0.44 +0.2
36,718 - MPMX19_03801 0.44 +0.3
36,718 - MPMX19_03801 0.44 +0.6
36,825 - MPMX19_03801 0.55 -1.7

Or see this region's nucleotide sequence