Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03768 and MPMX19_03769 are separated by 284 nucleotides MPMX19_03769 and MPMX19_03770 are separated by 351 nucleotides
MPMX19_03768: MPMX19_03768 - hypothetical protein, at 11,321 to 12,223
_03768
MPMX19_03769: MPMX19_03769 - hypothetical protein, at 12,508 to 13,458
_03769
MPMX19_03770: MPMX19_03770 - hypothetical protein, at 13,810 to 13,980
_03770
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 11.601 kb on - strand, within MPMX19_03768 at 11.700 kb on + strand, within MPMX19_03768 at 11.700 kb on + strand, within MPMX19_03768 at 11.786 kb on + strand, within MPMX19_03768 at 11.810 kb on - strand, within MPMX19_03768 at 11.870 kb on + strand, within MPMX19_03768 at 12.118 kb on + strand, within MPMX19_03768 at 12.176 kb on + strand at 12.297 kb on - strand at 12.433 kb on + strand at 12.481 kb on - strand at 12.484 kb on + strand at 12.484 kb on + strand at 12.503 kb on - strand at 12.547 kb on + strand at 12.590 kb on + strand at 12.754 kb on - strand, within MPMX19_03769 at 12.754 kb on - strand, within MPMX19_03769 at 12.885 kb on + strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.886 kb on - strand, within MPMX19_03769 at 12.961 kb on + strand, within MPMX19_03769 at 12.961 kb on + strand, within MPMX19_03769 at 12.962 kb on - strand, within MPMX19_03769 at 13.024 kb on - strand, within MPMX19_03769 at 13.030 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.106 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.136 kb on + strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.137 kb on - strand, within MPMX19_03769 at 13.183 kb on + strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769 at 13.184 kb on - strand, within MPMX19_03769 at 13.262 kb on + strand, within MPMX19_03769 at 13.262 kb on + strand, within MPMX19_03769 at 13.263 kb on - strand, within MPMX19_03769 at 13.307 kb on + strand, within MPMX19_03769 at 13.307 kb on + strand, within MPMX19_03769 at 13.308 kb on - strand, within MPMX19_03769 at 13.334 kb on + strand, within MPMX19_03769 at 13.335 kb on - strand, within MPMX19_03769 at 13.335 kb on - strand, within MPMX19_03769 at 13.335 kb on - strand, within MPMX19_03769 at 13.335 kb on - strand, within MPMX19_03769 at 13.335 kb on - strand, within MPMX19_03769 at 13.436 kb on + strand at 13.436 kb on + strand at 13.452 kb on + strand at 13.452 kb on + strand at 13.523 kb on + strand at 13.526 kb on + strand at 13.582 kb on + strand at 13.583 kb on - strand at 13.665 kb on + strand at 13.665 kb on + strand at 13.665 kb on + strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 13.666 kb on - strand at 14.042 kb on + strand at 14.043 kb on - strand at 14.043 kb on - strand at 14.043 kb on - strand at 14.126 kb on + strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.127 kb on - strand at 14.192 kb on - strand at 14.226 kb on + strand at 14.227 kb on - strand at 14.235 kb on + strand at 14.276 kb on - strand at 14.357 kb on + strand at 14.358 kb on - strand at 14.403 kb on + strand at 14.458 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 11,601 - MPMX19_03768 0.31 -0.6 11,700 + MPMX19_03768 0.42 -0.3 11,700 + MPMX19_03768 0.42 -0.1 11,786 + MPMX19_03768 0.51 -0.7 11,810 - MPMX19_03768 0.54 -0.4 11,870 + MPMX19_03768 0.61 +0.3 12,118 + MPMX19_03768 0.88 -0.9 12,176 + -0.8 12,297 - -0.3 12,433 + -0.6 12,481 - +1.3 12,484 + +0.2 12,484 + -1.7 12,503 - +1.0 12,547 + +0.2 12,590 + -0.8 12,754 - MPMX19_03769 0.26 -1.0 12,754 - MPMX19_03769 0.26 +0.9 12,885 + MPMX19_03769 0.40 -2.6 12,886 - MPMX19_03769 0.40 -0.8 12,886 - MPMX19_03769 0.40 +1.4 12,886 - MPMX19_03769 0.40 -0.3 12,961 + MPMX19_03769 0.48 -0.6 12,961 + MPMX19_03769 0.48 -2.3 12,962 - MPMX19_03769 0.48 +0.8 13,024 - MPMX19_03769 0.54 +3.2 13,030 + MPMX19_03769 0.55 +0.2 13,106 + MPMX19_03769 0.63 +0.2 13,106 + MPMX19_03769 0.63 -0.7 13,106 + MPMX19_03769 0.63 -1.4 13,106 + MPMX19_03769 0.63 -1.0 13,106 + MPMX19_03769 0.63 -0.8 13,136 + MPMX19_03769 0.66 -1.5 13,136 + MPMX19_03769 0.66 -1.3 13,136 + MPMX19_03769 0.66 -1.1 13,136 + MPMX19_03769 0.66 +0.6 13,137 - MPMX19_03769 0.66 -2.1 13,137 - MPMX19_03769 0.66 +0.6 13,137 - MPMX19_03769 0.66 -0.4 13,137 - MPMX19_03769 0.66 +0.2 13,183 + MPMX19_03769 0.71 -0.2 13,184 - MPMX19_03769 0.71 -0.6 13,184 - MPMX19_03769 0.71 -1.1 13,184 - MPMX19_03769 0.71 +0.6 13,262 + MPMX19_03769 0.79 -1.4 13,262 + MPMX19_03769 0.79 +0.9 13,263 - MPMX19_03769 0.79 -0.4 13,307 + MPMX19_03769 0.84 -1.5 13,307 + MPMX19_03769 0.84 -0.2 13,308 - MPMX19_03769 0.84 +0.3 13,334 + MPMX19_03769 0.87 -1.9 13,335 - MPMX19_03769 0.87 -0.6 13,335 - MPMX19_03769 0.87 +0.6 13,335 - MPMX19_03769 0.87 +0.6 13,335 - MPMX19_03769 0.87 -0.4 13,335 - MPMX19_03769 0.87 -0.6 13,436 + -1.0 13,436 + +0.9 13,452 + -2.0 13,452 + -1.3 13,523 + +0.4 13,526 + -0.5 13,582 + -0.3 13,583 - -0.7 13,665 + -0.8 13,665 + -0.1 13,665 + -0.8 13,666 - -0.9 13,666 - -0.5 13,666 - -1.5 13,666 - -1.3 13,666 - -1.2 13,666 - -0.6 13,666 - -0.5 13,666 - +0.5 13,666 - +0.6 14,042 + +0.6 14,043 - -0.3 14,043 - -0.1 14,043 - +0.3 14,126 + +0.5 14,127 - +0.3 14,127 - -1.6 14,127 - -0.6 14,127 - +0.1 14,127 - -1.8 14,127 - -0.3 14,127 - -1.8 14,192 - +0.1 14,226 + -2.9 14,227 - -1.0 14,235 + +0.0 14,276 - -1.2 14,357 + -1.5 14,358 - -0.8 14,403 + -0.4 14,458 + +0.2
Or see this region's nucleotide sequence