Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03759

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03758 and MPMX19_03759 are separated by 21 nucleotidesMPMX19_03759 and MPMX19_03760 are separated by 87 nucleotides MPMX19_03758: MPMX19_03758 - Ribose import ATP-binding protein RbsA, at 1,202,308 to 1,203,804 _03758 MPMX19_03759: MPMX19_03759 - Ribose import permease protein RbsC, at 1,203,826 to 1,204,767 _03759 MPMX19_03760: MPMX19_03760 - Ribose import binding protein RbsB, at 1,204,855 to 1,205,736 _03760 Position (kb) 1203 1204 1205Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.908 kb on + strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1202.909 kb on - strand, within MPMX19_03758at 1203.059 kb on - strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.064 kb on + strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758at 1203.065 kb on - strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.313 kb on + strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.314 kb on - strand, within MPMX19_03758at 1203.625 kb on + strand, within MPMX19_03758at 1203.625 kb on + strand, within MPMX19_03758at 1203.626 kb on - strand, within MPMX19_03758at 1203.626 kb on - strand, within MPMX19_03758at 1203.626 kb on - strand, within MPMX19_03758at 1203.626 kb on - strand, within MPMX19_03758at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.991 kb on + strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1203.992 kb on - strand, within MPMX19_03759at 1204.300 kb on + strand, within MPMX19_03759at 1204.301 kb on - strand, within MPMX19_03759at 1204.390 kb on + strand, within MPMX19_03759at 1204.390 kb on + strand, within MPMX19_03759at 1204.391 kb on - strand, within MPMX19_03759at 1204.391 kb on - strand, within MPMX19_03759at 1204.391 kb on - strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.396 kb on + strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.397 kb on - strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.468 kb on + strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.469 kb on - strand, within MPMX19_03759at 1204.555 kb on + strand, within MPMX19_03759at 1204.555 kb on + strand, within MPMX19_03759at 1204.555 kb on + strand, within MPMX19_03759at 1204.696 kb on + strandat 1204.696 kb on + strandat 1204.696 kb on + strandat 1204.696 kb on + strandat 1204.696 kb on + strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.697 kb on - strandat 1204.699 kb on + strandat 1204.699 kb on + strandat 1204.699 kb on + strandat 1204.700 kb on - strandat 1204.700 kb on - strandat 1204.700 kb on - strandat 1204.700 kb on - strandat 1204.766 kb on - strandat 1204.860 kb on + strandat 1204.860 kb on + strandat 1204.860 kb on + strandat 1204.860 kb on + strandat 1204.860 kb on + strandat 1204.860 kb on + strandat 1204.860 kb on + strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1204.861 kb on - strandat 1205.017 kb on + strand, within MPMX19_03760at 1205.018 kb on - strand, within MPMX19_03760at 1205.018 kb on - strand, within MPMX19_03760at 1205.018 kb on - strand, within MPMX19_03760at 1205.018 kb on - strand, within MPMX19_03760at 1205.734 kb on + strandat 1205.734 kb on + strandat 1205.734 kb on + strandat 1205.734 kb on + strandat 1205.734 kb on + strandat 1205.734 kb on + strandat 1205.734 kb on + strandat 1205.735 kb on - strandat 1205.735 kb on - strandat 1205.735 kb on - strandat 1205.735 kb on - strandat 1205.735 kb on - strandat 1205.735 kb on - strandat 1205.735 kb on - strandat 1205.735 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,202,908 + MPMX19_03758 0.40 -1.2
1,202,908 + MPMX19_03758 0.40 -0.3
1,202,908 + MPMX19_03758 0.40 -0.7
1,202,908 + MPMX19_03758 0.40 +0.1
1,202,908 + MPMX19_03758 0.40 -1.0
1,202,908 + MPMX19_03758 0.40 -1.9
1,202,908 + MPMX19_03758 0.40 -1.2
1,202,908 + MPMX19_03758 0.40 -0.3
1,202,908 + MPMX19_03758 0.40 -0.2
1,202,909 - MPMX19_03758 0.40 -0.5
1,202,909 - MPMX19_03758 0.40 -0.6
1,202,909 - MPMX19_03758 0.40 -0.1
1,202,909 - MPMX19_03758 0.40 -2.1
1,202,909 - MPMX19_03758 0.40 +0.6
1,202,909 - MPMX19_03758 0.40 -0.5
1,202,909 - MPMX19_03758 0.40 -1.3
1,202,909 - MPMX19_03758 0.40 +0.2
1,202,909 - MPMX19_03758 0.40 -1.2
1,202,909 - MPMX19_03758 0.40 -0.7
1,202,909 - MPMX19_03758 0.40 -0.2
1,202,909 - MPMX19_03758 0.40 -1.6
1,202,909 - MPMX19_03758 0.40 -1.8
1,203,059 - MPMX19_03758 0.50 +0.4
1,203,064 + MPMX19_03758 0.51 -1.3
1,203,064 + MPMX19_03758 0.51 +0.4
1,203,064 + MPMX19_03758 0.51 +0.5
1,203,064 + MPMX19_03758 0.51 +0.8
1,203,064 + MPMX19_03758 0.51 -0.8
1,203,064 + MPMX19_03758 0.51 +0.2
1,203,064 + MPMX19_03758 0.51 -1.2
1,203,064 + MPMX19_03758 0.51 +0.0
1,203,064 + MPMX19_03758 0.51 +0.7
1,203,065 - MPMX19_03758 0.51 -0.1
1,203,065 - MPMX19_03758 0.51 -1.3
1,203,065 - MPMX19_03758 0.51 -0.2
1,203,065 - MPMX19_03758 0.51 -0.2
1,203,313 + MPMX19_03758 0.67 -0.6
1,203,313 + MPMX19_03758 0.67 +0.8
1,203,313 + MPMX19_03758 0.67 -0.2
1,203,313 + MPMX19_03758 0.67 -0.0
1,203,313 + MPMX19_03758 0.67 +0.5
1,203,313 + MPMX19_03758 0.67 -1.6
1,203,314 - MPMX19_03758 0.67 -0.6
1,203,314 - MPMX19_03758 0.67 -1.5
1,203,314 - MPMX19_03758 0.67 -0.8
1,203,314 - MPMX19_03758 0.67 -0.3
1,203,314 - MPMX19_03758 0.67 -1.6
1,203,314 - MPMX19_03758 0.67 -0.1
1,203,314 - MPMX19_03758 0.67 -0.6
1,203,314 - MPMX19_03758 0.67 +0.4
1,203,314 - MPMX19_03758 0.67 +0.4
1,203,314 - MPMX19_03758 0.67 -1.1
1,203,625 + MPMX19_03758 0.88 -0.2
1,203,625 + MPMX19_03758 0.88 -0.1
1,203,626 - MPMX19_03758 0.88 -0.6
1,203,626 - MPMX19_03758 0.88 +0.8
1,203,626 - MPMX19_03758 0.88 +0.1
1,203,626 - MPMX19_03758 0.88 -1.2
1,203,991 + MPMX19_03759 0.18 -1.5
1,203,991 + MPMX19_03759 0.18 +0.7
1,203,991 + MPMX19_03759 0.18 -0.7
1,203,991 + MPMX19_03759 0.18 -1.6
1,203,991 + MPMX19_03759 0.18 +0.1
1,203,991 + MPMX19_03759 0.18 -0.9
1,203,991 + MPMX19_03759 0.18 -0.7
1,203,991 + MPMX19_03759 0.18 -0.0
1,203,991 + MPMX19_03759 0.18 -0.6
1,203,991 + MPMX19_03759 0.18 +0.2
1,203,991 + MPMX19_03759 0.18 -0.1
1,203,991 + MPMX19_03759 0.18 +0.4
1,203,991 + MPMX19_03759 0.18 +1.0
1,203,991 + MPMX19_03759 0.18 -1.2
1,203,991 + MPMX19_03759 0.18 -0.3
1,203,991 + MPMX19_03759 0.18 -0.0
1,203,991 + MPMX19_03759 0.18 -1.2
1,203,992 - MPMX19_03759 0.18 +0.6
1,203,992 - MPMX19_03759 0.18 -1.2
1,203,992 - MPMX19_03759 0.18 -1.0
1,203,992 - MPMX19_03759 0.18 -0.9
1,203,992 - MPMX19_03759 0.18 -0.9
1,203,992 - MPMX19_03759 0.18 +1.0
1,203,992 - MPMX19_03759 0.18 -0.3
1,203,992 - MPMX19_03759 0.18 -1.1
1,203,992 - MPMX19_03759 0.18 -0.2
1,203,992 - MPMX19_03759 0.18 -0.6
1,203,992 - MPMX19_03759 0.18 -0.9
1,203,992 - MPMX19_03759 0.18 -1.3
1,203,992 - MPMX19_03759 0.18 -2.3
1,203,992 - MPMX19_03759 0.18 -2.3
1,203,992 - MPMX19_03759 0.18 -0.3
1,203,992 - MPMX19_03759 0.18 -0.8
1,203,992 - MPMX19_03759 0.18 -1.5
1,203,992 - MPMX19_03759 0.18 +0.3
1,203,992 - MPMX19_03759 0.18 -2.1
1,204,300 + MPMX19_03759 0.50 +0.1
1,204,301 - MPMX19_03759 0.50 -0.8
1,204,390 + MPMX19_03759 0.60 +0.3
1,204,390 + MPMX19_03759 0.60 -1.2
1,204,391 - MPMX19_03759 0.60 -0.8
1,204,391 - MPMX19_03759 0.60 +0.0
1,204,391 - MPMX19_03759 0.60 +1.0
1,204,396 + MPMX19_03759 0.61 -1.3
1,204,396 + MPMX19_03759 0.61 -2.3
1,204,396 + MPMX19_03759 0.61 -1.6
1,204,396 + MPMX19_03759 0.61 -1.0
1,204,396 + MPMX19_03759 0.61 -0.9
1,204,396 + MPMX19_03759 0.61 +0.3
1,204,396 + MPMX19_03759 0.61 -0.8
1,204,396 + MPMX19_03759 0.61 -1.6
1,204,396 + MPMX19_03759 0.61 +0.4
1,204,396 + MPMX19_03759 0.61 +1.0
1,204,396 + MPMX19_03759 0.61 -1.7
1,204,396 + MPMX19_03759 0.61 -0.9
1,204,396 + MPMX19_03759 0.61 -0.7
1,204,396 + MPMX19_03759 0.61 +0.2
1,204,396 + MPMX19_03759 0.61 -2.2
1,204,397 - MPMX19_03759 0.61 -0.3
1,204,397 - MPMX19_03759 0.61 -0.0
1,204,397 - MPMX19_03759 0.61 -1.0
1,204,397 - MPMX19_03759 0.61 -1.0
1,204,397 - MPMX19_03759 0.61 -0.3
1,204,397 - MPMX19_03759 0.61 +0.4
1,204,397 - MPMX19_03759 0.61 -3.4
1,204,397 - MPMX19_03759 0.61 +0.6
1,204,397 - MPMX19_03759 0.61 -1.7
1,204,397 - MPMX19_03759 0.61 -0.4
1,204,397 - MPMX19_03759 0.61 -1.5
1,204,468 + MPMX19_03759 0.68 -1.5
1,204,468 + MPMX19_03759 0.68 -0.3
1,204,468 + MPMX19_03759 0.68 -0.9
1,204,468 + MPMX19_03759 0.68 -0.6
1,204,468 + MPMX19_03759 0.68 -0.5
1,204,468 + MPMX19_03759 0.68 -1.2
1,204,468 + MPMX19_03759 0.68 +0.3
1,204,468 + MPMX19_03759 0.68 +0.7
1,204,469 - MPMX19_03759 0.68 +0.4
1,204,469 - MPMX19_03759 0.68 +0.1
1,204,469 - MPMX19_03759 0.68 +0.8
1,204,469 - MPMX19_03759 0.68 -1.3
1,204,469 - MPMX19_03759 0.68 -0.9
1,204,469 - MPMX19_03759 0.68 -1.3
1,204,469 - MPMX19_03759 0.68 -0.7
1,204,469 - MPMX19_03759 0.68 +1.3
1,204,469 - MPMX19_03759 0.68 -0.6
1,204,469 - MPMX19_03759 0.68 -0.3
1,204,555 + MPMX19_03759 0.77 +0.5
1,204,555 + MPMX19_03759 0.77 -0.2
1,204,555 + MPMX19_03759 0.77 -0.6
1,204,696 + -0.2
1,204,696 + -0.1
1,204,696 + +0.8
1,204,696 + -0.3
1,204,696 + -2.4
1,204,697 - -0.7
1,204,697 - -0.4
1,204,697 - -1.5
1,204,697 - -1.0
1,204,697 - +0.7
1,204,697 - -2.5
1,204,697 - +0.8
1,204,697 - -0.3
1,204,697 - -0.9
1,204,697 - -1.3
1,204,697 - +0.6
1,204,697 - -2.7
1,204,699 + -0.3
1,204,699 + -0.6
1,204,699 + -0.4
1,204,700 - -2.4
1,204,700 - -0.3
1,204,700 - -0.3
1,204,700 - -1.2
1,204,766 - -0.1
1,204,860 + -0.1
1,204,860 + +1.6
1,204,860 + -0.9
1,204,860 + -1.0
1,204,860 + +0.2
1,204,860 + -0.0
1,204,860 + -0.0
1,204,861 - -0.5
1,204,861 - -2.2
1,204,861 - -1.6
1,204,861 - +0.2
1,204,861 - -0.3
1,204,861 - -0.8
1,204,861 - -0.3
1,204,861 - -0.8
1,204,861 - +2.0
1,204,861 - +0.1
1,204,861 - -0.8
1,204,861 - -0.8
1,204,861 - +1.2
1,205,017 + MPMX19_03760 0.18 +0.4
1,205,018 - MPMX19_03760 0.18 -0.9
1,205,018 - MPMX19_03760 0.18 -0.6
1,205,018 - MPMX19_03760 0.18 +1.2
1,205,018 - MPMX19_03760 0.18 -1.0
1,205,734 + +0.3
1,205,734 + -0.1
1,205,734 + -1.4
1,205,734 + -0.6
1,205,734 + -0.8
1,205,734 + -1.2
1,205,734 + -0.3
1,205,735 - +0.7
1,205,735 - +1.4
1,205,735 - +0.2
1,205,735 - -1.1
1,205,735 - -0.7
1,205,735 - +0.5
1,205,735 - -0.3
1,205,735 - -1.2

Or see this region's nucleotide sequence