Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03603 and MPMX19_03604 are separated by 161 nucleotides MPMX19_03604 and MPMX19_03605 are separated by 58 nucleotides
MPMX19_03603: MPMX19_03603 - hypothetical protein, at 1,032,296 to 1,033,249
_03603
MPMX19_03604: MPMX19_03604 - hypothetical protein, at 1,033,411 to 1,034,724
_03604
MPMX19_03605: MPMX19_03605 - Vitamin B12 import ATP-binding protein BtuD, at 1,034,783 to 1,035,787
_03605
Position (kb)
1033
1034
1035 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1032.571 kb on + strand, within MPMX19_03603 at 1032.571 kb on + strand, within MPMX19_03603 at 1032.571 kb on + strand, within MPMX19_03603 at 1032.571 kb on + strand, within MPMX19_03603 at 1032.572 kb on - strand, within MPMX19_03603 at 1032.657 kb on + strand, within MPMX19_03603 at 1032.657 kb on + strand, within MPMX19_03603 at 1032.657 kb on + strand, within MPMX19_03603 at 1032.657 kb on + strand, within MPMX19_03603 at 1032.657 kb on + strand, within MPMX19_03603 at 1032.657 kb on + strand, within MPMX19_03603 at 1032.658 kb on - strand, within MPMX19_03603 at 1032.658 kb on - strand, within MPMX19_03603 at 1032.658 kb on - strand, within MPMX19_03603 at 1032.658 kb on - strand, within MPMX19_03603 at 1032.658 kb on - strand, within MPMX19_03603 at 1032.658 kb on - strand, within MPMX19_03603 at 1032.658 kb on - strand, within MPMX19_03603 at 1032.658 kb on - strand, within MPMX19_03603 at 1032.658 kb on - strand, within MPMX19_03603 at 1032.886 kb on - strand, within MPMX19_03603 at 1032.886 kb on - strand, within MPMX19_03603 at 1032.937 kb on - strand, within MPMX19_03603 at 1032.954 kb on + strand, within MPMX19_03603 at 1032.954 kb on + strand, within MPMX19_03603 at 1032.955 kb on - strand, within MPMX19_03603 at 1032.955 kb on - strand, within MPMX19_03603 at 1032.993 kb on + strand, within MPMX19_03603 at 1032.993 kb on + strand, within MPMX19_03603 at 1032.993 kb on + strand, within MPMX19_03603 at 1032.993 kb on + strand, within MPMX19_03603 at 1032.993 kb on + strand, within MPMX19_03603 at 1032.993 kb on + strand, within MPMX19_03603 at 1032.994 kb on - strand, within MPMX19_03603 at 1032.994 kb on - strand, within MPMX19_03603 at 1033.018 kb on - strand, within MPMX19_03603 at 1033.035 kb on + strand, within MPMX19_03603 at 1033.036 kb on - strand, within MPMX19_03603 at 1033.036 kb on - strand, within MPMX19_03603 at 1033.122 kb on + strand, within MPMX19_03603 at 1033.122 kb on + strand, within MPMX19_03603 at 1033.123 kb on - strand, within MPMX19_03603 at 1033.123 kb on - strand, within MPMX19_03603 at 1033.123 kb on - strand, within MPMX19_03603 at 1033.308 kb on + strand at 1033.364 kb on + strand at 1033.448 kb on + strand at 1033.448 kb on + strand at 1033.448 kb on + strand at 1033.448 kb on + strand at 1033.448 kb on + strand at 1033.448 kb on + strand at 1033.448 kb on + strand at 1033.449 kb on - strand at 1033.449 kb on - strand at 1033.449 kb on - strand at 1033.449 kb on - strand at 1033.449 kb on - strand at 1033.449 kb on - strand at 1033.449 kb on - strand at 1033.449 kb on - strand at 1033.652 kb on + strand, within MPMX19_03604 at 1033.653 kb on - strand, within MPMX19_03604 at 1033.653 kb on - strand, within MPMX19_03604 at 1033.653 kb on - strand, within MPMX19_03604 at 1033.653 kb on - strand, within MPMX19_03604 at 1033.653 kb on - strand, within MPMX19_03604 at 1033.673 kb on + strand, within MPMX19_03604 at 1033.673 kb on + strand, within MPMX19_03604 at 1033.674 kb on - strand, within MPMX19_03604 at 1033.674 kb on - strand, within MPMX19_03604 at 1033.697 kb on + strand, within MPMX19_03604 at 1033.697 kb on + strand, within MPMX19_03604 at 1033.697 kb on + strand, within MPMX19_03604 at 1033.697 kb on + strand, within MPMX19_03604 at 1033.698 kb on - strand, within MPMX19_03604 at 1033.698 kb on - strand, within MPMX19_03604 at 1033.698 kb on - strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.709 kb on + strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.710 kb on - strand, within MPMX19_03604 at 1033.715 kb on + strand, within MPMX19_03604 at 1033.715 kb on + strand, within MPMX19_03604 at 1033.716 kb on - strand, within MPMX19_03604 at 1033.716 kb on - strand, within MPMX19_03604 at 1033.782 kb on - strand, within MPMX19_03604 at 1033.802 kb on + strand, within MPMX19_03604 at 1033.802 kb on + strand, within MPMX19_03604 at 1033.803 kb on - strand, within MPMX19_03604 at 1033.803 kb on - strand, within MPMX19_03604 at 1033.803 kb on - strand, within MPMX19_03604 at 1034.006 kb on + strand, within MPMX19_03604 at 1034.006 kb on + strand, within MPMX19_03604 at 1034.007 kb on - strand, within MPMX19_03604 at 1034.007 kb on - strand, within MPMX19_03604 at 1034.174 kb on + strand, within MPMX19_03604 at 1034.174 kb on + strand, within MPMX19_03604 at 1034.174 kb on + strand, within MPMX19_03604 at 1034.174 kb on + strand, within MPMX19_03604 at 1034.174 kb on + strand, within MPMX19_03604 at 1034.174 kb on + strand, within MPMX19_03604 at 1034.174 kb on + strand, within MPMX19_03604 at 1034.174 kb on + strand, within MPMX19_03604 at 1034.174 kb on + strand, within MPMX19_03604 at 1034.175 kb on - strand, within MPMX19_03604 at 1034.175 kb on - strand, within MPMX19_03604 at 1034.175 kb on - strand, within MPMX19_03604 at 1034.175 kb on - strand, within MPMX19_03604 at 1034.175 kb on - strand, within MPMX19_03604 at 1034.175 kb on - strand, within MPMX19_03604 at 1034.175 kb on - strand, within MPMX19_03604 at 1034.402 kb on + strand, within MPMX19_03604 at 1034.402 kb on + strand, within MPMX19_03604 at 1034.403 kb on - strand, within MPMX19_03604 at 1034.403 kb on - strand, within MPMX19_03604 at 1034.423 kb on + strand, within MPMX19_03604 at 1034.423 kb on + strand, within MPMX19_03604 at 1034.423 kb on + strand, within MPMX19_03604 at 1034.423 kb on + strand, within MPMX19_03604 at 1034.424 kb on - strand, within MPMX19_03604 at 1034.424 kb on - strand, within MPMX19_03604 at 1034.424 kb on - strand, within MPMX19_03604 at 1034.709 kb on + strand at 1034.709 kb on + strand at 1034.709 kb on + strand at 1034.710 kb on - strand at 1034.862 kb on + strand at 1034.940 kb on + strand, within MPMX19_03605 at 1034.940 kb on + strand, within MPMX19_03605 at 1034.940 kb on + strand, within MPMX19_03605 at 1034.941 kb on - strand, within MPMX19_03605 at 1034.941 kb on - strand, within MPMX19_03605 at 1034.941 kb on - strand, within MPMX19_03605 at 1035.402 kb on + strand, within MPMX19_03605 at 1035.402 kb on + strand, within MPMX19_03605 at 1035.402 kb on + strand, within MPMX19_03605 at 1035.402 kb on + strand, within MPMX19_03605 at 1035.402 kb on + strand, within MPMX19_03605 at 1035.402 kb on + strand, within MPMX19_03605 at 1035.402 kb on + strand, within MPMX19_03605 at 1035.403 kb on - strand, within MPMX19_03605 at 1035.403 kb on - strand, within MPMX19_03605 at 1035.528 kb on + strand, within MPMX19_03605 at 1035.528 kb on + strand, within MPMX19_03605 at 1035.529 kb on - strand, within MPMX19_03605 at 1035.529 kb on - strand, within MPMX19_03605 at 1035.529 kb on - strand, within MPMX19_03605 at 1035.529 kb on - strand, within MPMX19_03605 at 1035.529 kb on - strand, within MPMX19_03605 at 1035.529 kb on - strand, within MPMX19_03605 at 1035.529 kb on - strand, within MPMX19_03605 at 1035.529 kb on - strand, within MPMX19_03605 at 1035.687 kb on + strand at 1035.687 kb on + strand at 1035.687 kb on + strand at 1035.687 kb on + strand at 1035.687 kb on + strand at 1035.687 kb on + strand at 1035.687 kb on + strand at 1035.687 kb on + strand at 1035.688 kb on - strand at 1035.688 kb on - strand at 1035.688 kb on - strand at 1035.688 kb on - strand at 1035.688 kb on - strand at 1035.688 kb on - strand at 1035.688 kb on - strand at 1035.688 kb on - strand at 1035.688 kb on - strand at 1035.713 kb on + strand at 1035.713 kb on + strand at 1035.713 kb on + strand at 1035.713 kb on + strand at 1035.713 kb on + strand at 1035.714 kb on - strand at 1035.714 kb on - strand at 1035.714 kb on - strand at 1035.714 kb on - strand at 1035.714 kb on - strand at 1035.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 1,032,571 + MPMX19_03603 0.29 -0.0 1,032,571 + MPMX19_03603 0.29 -1.9 1,032,571 + MPMX19_03603 0.29 +1.3 1,032,571 + MPMX19_03603 0.29 -1.9 1,032,572 - MPMX19_03603 0.29 +1.1 1,032,657 + MPMX19_03603 0.38 -0.2 1,032,657 + MPMX19_03603 0.38 +1.7 1,032,657 + MPMX19_03603 0.38 -0.7 1,032,657 + MPMX19_03603 0.38 -0.0 1,032,657 + MPMX19_03603 0.38 -1.2 1,032,657 + MPMX19_03603 0.38 -1.6 1,032,658 - MPMX19_03603 0.38 -0.8 1,032,658 - MPMX19_03603 0.38 -0.6 1,032,658 - MPMX19_03603 0.38 +1.0 1,032,658 - MPMX19_03603 0.38 -2.6 1,032,658 - MPMX19_03603 0.38 +0.4 1,032,658 - MPMX19_03603 0.38 -1.0 1,032,658 - MPMX19_03603 0.38 -0.5 1,032,658 - MPMX19_03603 0.38 -1.2 1,032,658 - MPMX19_03603 0.38 -0.3 1,032,886 - MPMX19_03603 0.62 -0.4 1,032,886 - MPMX19_03603 0.62 -0.0 1,032,937 - MPMX19_03603 0.67 -0.2 1,032,954 + MPMX19_03603 0.69 -0.3 1,032,954 + MPMX19_03603 0.69 -0.2 1,032,955 - MPMX19_03603 0.69 -0.0 1,032,955 - MPMX19_03603 0.69 -0.2 1,032,993 + MPMX19_03603 0.73 -0.6 1,032,993 + MPMX19_03603 0.73 +0.3 1,032,993 + MPMX19_03603 0.73 -0.5 1,032,993 + MPMX19_03603 0.73 -1.0 1,032,993 + MPMX19_03603 0.73 -1.9 1,032,993 + MPMX19_03603 0.73 -0.4 1,032,994 - MPMX19_03603 0.73 -1.3 1,032,994 - MPMX19_03603 0.73 -1.9 1,033,018 - MPMX19_03603 0.76 -0.7 1,033,035 + MPMX19_03603 0.77 -0.5 1,033,036 - MPMX19_03603 0.78 -0.5 1,033,036 - MPMX19_03603 0.78 -1.9 1,033,122 + MPMX19_03603 0.87 -1.0 1,033,122 + MPMX19_03603 0.87 -1.6 1,033,123 - MPMX19_03603 0.87 +0.7 1,033,123 - MPMX19_03603 0.87 -1.9 1,033,123 - MPMX19_03603 0.87 +0.2 1,033,308 + +0.6 1,033,364 + -2.2 1,033,448 + -0.3 1,033,448 + -1.7 1,033,448 + -0.2 1,033,448 + +0.2 1,033,448 + -0.8 1,033,448 + -0.6 1,033,448 + +0.4 1,033,449 - -0.5 1,033,449 - +0.8 1,033,449 - -1.1 1,033,449 - -0.1 1,033,449 - -0.6 1,033,449 - -3.0 1,033,449 - +0.1 1,033,449 - +0.2 1,033,652 + MPMX19_03604 0.18 -1.0 1,033,653 - MPMX19_03604 0.18 -1.3 1,033,653 - MPMX19_03604 0.18 -1.3 1,033,653 - MPMX19_03604 0.18 -1.3 1,033,653 - MPMX19_03604 0.18 -0.8 1,033,653 - MPMX19_03604 0.18 -1.1 1,033,673 + MPMX19_03604 0.20 -0.6 1,033,673 + MPMX19_03604 0.20 +0.8 1,033,674 - MPMX19_03604 0.20 -0.8 1,033,674 - MPMX19_03604 0.20 -1.0 1,033,697 + MPMX19_03604 0.22 +0.8 1,033,697 + MPMX19_03604 0.22 -2.9 1,033,697 + MPMX19_03604 0.22 -0.5 1,033,697 + MPMX19_03604 0.22 -0.8 1,033,698 - MPMX19_03604 0.22 -0.7 1,033,698 - MPMX19_03604 0.22 -0.7 1,033,698 - MPMX19_03604 0.22 +0.7 1,033,709 + MPMX19_03604 0.23 -0.9 1,033,709 + MPMX19_03604 0.23 -1.3 1,033,709 + MPMX19_03604 0.23 -1.0 1,033,709 + MPMX19_03604 0.23 -1.3 1,033,709 + MPMX19_03604 0.23 -0.0 1,033,709 + MPMX19_03604 0.23 -1.1 1,033,709 + MPMX19_03604 0.23 +0.9 1,033,709 + MPMX19_03604 0.23 +0.2 1,033,709 + MPMX19_03604 0.23 +0.8 1,033,709 + MPMX19_03604 0.23 -1.6 1,033,709 + MPMX19_03604 0.23 -1.2 1,033,709 + MPMX19_03604 0.23 -0.0 1,033,709 + MPMX19_03604 0.23 +0.0 1,033,709 + MPMX19_03604 0.23 -0.7 1,033,709 + MPMX19_03604 0.23 +0.3 1,033,709 + MPMX19_03604 0.23 -0.8 1,033,709 + MPMX19_03604 0.23 +0.4 1,033,709 + MPMX19_03604 0.23 -0.8 1,033,710 - MPMX19_03604 0.23 +0.4 1,033,710 - MPMX19_03604 0.23 +0.7 1,033,710 - MPMX19_03604 0.23 +0.8 1,033,710 - MPMX19_03604 0.23 -0.6 1,033,710 - MPMX19_03604 0.23 -0.2 1,033,710 - MPMX19_03604 0.23 -2.0 1,033,710 - MPMX19_03604 0.23 -0.0 1,033,710 - MPMX19_03604 0.23 -0.9 1,033,710 - MPMX19_03604 0.23 -0.4 1,033,710 - MPMX19_03604 0.23 -1.5 1,033,710 - MPMX19_03604 0.23 -0.7 1,033,710 - MPMX19_03604 0.23 -1.1 1,033,710 - MPMX19_03604 0.23 -0.1 1,033,710 - MPMX19_03604 0.23 -0.8 1,033,710 - MPMX19_03604 0.23 +0.1 1,033,710 - MPMX19_03604 0.23 -0.7 1,033,710 - MPMX19_03604 0.23 -0.0 1,033,710 - MPMX19_03604 0.23 -0.6 1,033,710 - MPMX19_03604 0.23 -0.1 1,033,710 - MPMX19_03604 0.23 -0.6 1,033,710 - MPMX19_03604 0.23 -0.6 1,033,715 + MPMX19_03604 0.23 -0.2 1,033,715 + MPMX19_03604 0.23 -1.2 1,033,716 - MPMX19_03604 0.23 -1.6 1,033,716 - MPMX19_03604 0.23 -1.5 1,033,782 - MPMX19_03604 0.28 -1.1 1,033,802 + MPMX19_03604 0.30 -2.1 1,033,802 + MPMX19_03604 0.30 -1.0 1,033,803 - MPMX19_03604 0.30 +1.1 1,033,803 - MPMX19_03604 0.30 -0.8 1,033,803 - MPMX19_03604 0.30 +0.0 1,034,006 + MPMX19_03604 0.45 -0.8 1,034,006 + MPMX19_03604 0.45 -1.3 1,034,007 - MPMX19_03604 0.45 +0.1 1,034,007 - MPMX19_03604 0.45 +0.5 1,034,174 + MPMX19_03604 0.58 -0.3 1,034,174 + MPMX19_03604 0.58 +0.2 1,034,174 + MPMX19_03604 0.58 -1.6 1,034,174 + MPMX19_03604 0.58 -1.7 1,034,174 + MPMX19_03604 0.58 -1.3 1,034,174 + MPMX19_03604 0.58 -0.0 1,034,174 + MPMX19_03604 0.58 +0.4 1,034,174 + MPMX19_03604 0.58 -1.9 1,034,174 + MPMX19_03604 0.58 -0.0 1,034,175 - MPMX19_03604 0.58 -1.5 1,034,175 - MPMX19_03604 0.58 -2.7 1,034,175 - MPMX19_03604 0.58 -0.6 1,034,175 - MPMX19_03604 0.58 -0.3 1,034,175 - MPMX19_03604 0.58 -1.0 1,034,175 - MPMX19_03604 0.58 +1.1 1,034,175 - MPMX19_03604 0.58 -0.8 1,034,402 + MPMX19_03604 0.75 -1.6 1,034,402 + MPMX19_03604 0.75 -0.1 1,034,403 - MPMX19_03604 0.75 +1.2 1,034,403 - MPMX19_03604 0.75 -0.3 1,034,423 + MPMX19_03604 0.77 -1.4 1,034,423 + MPMX19_03604 0.77 +0.7 1,034,423 + MPMX19_03604 0.77 -0.3 1,034,423 + MPMX19_03604 0.77 +0.3 1,034,424 - MPMX19_03604 0.77 -0.3 1,034,424 - MPMX19_03604 0.77 -1.0 1,034,424 - MPMX19_03604 0.77 -0.8 1,034,709 + -0.6 1,034,709 + -1.0 1,034,709 + +0.8 1,034,710 - -1.0 1,034,862 + +0.5 1,034,940 + MPMX19_03605 0.16 -1.2 1,034,940 + MPMX19_03605 0.16 -1.5 1,034,940 + MPMX19_03605 0.16 -0.7 1,034,941 - MPMX19_03605 0.16 -1.6 1,034,941 - MPMX19_03605 0.16 +0.2 1,034,941 - MPMX19_03605 0.16 +0.3 1,035,402 + MPMX19_03605 0.62 -0.9 1,035,402 + MPMX19_03605 0.62 -1.0 1,035,402 + MPMX19_03605 0.62 -1.0 1,035,402 + MPMX19_03605 0.62 -0.0 1,035,402 + MPMX19_03605 0.62 +1.0 1,035,402 + MPMX19_03605 0.62 -1.5 1,035,402 + MPMX19_03605 0.62 -0.6 1,035,403 - MPMX19_03605 0.62 -0.3 1,035,403 - MPMX19_03605 0.62 -0.4 1,035,528 + MPMX19_03605 0.74 -0.5 1,035,528 + MPMX19_03605 0.74 -1.0 1,035,529 - MPMX19_03605 0.74 -1.4 1,035,529 - MPMX19_03605 0.74 -2.1 1,035,529 - MPMX19_03605 0.74 -0.0 1,035,529 - MPMX19_03605 0.74 -0.8 1,035,529 - MPMX19_03605 0.74 -0.2 1,035,529 - MPMX19_03605 0.74 -0.8 1,035,529 - MPMX19_03605 0.74 -0.4 1,035,529 - MPMX19_03605 0.74 -1.3 1,035,687 + +0.3 1,035,687 + -1.8 1,035,687 + -1.2 1,035,687 + +0.1 1,035,687 + -0.8 1,035,687 + -0.0 1,035,687 + -0.2 1,035,687 + -0.9 1,035,688 - +0.4 1,035,688 - -0.3 1,035,688 - -0.2 1,035,688 - +0.4 1,035,688 - +1.1 1,035,688 - -0.5 1,035,688 - -0.0 1,035,688 - -1.2 1,035,688 - -0.4 1,035,713 + +1.0 1,035,713 + -0.6 1,035,713 + +1.0 1,035,713 + -0.8 1,035,713 + +0.7 1,035,714 - -1.3 1,035,714 - -2.3 1,035,714 - +0.3 1,035,714 - +0.1 1,035,714 - -0.3 1,035,714 - -0.8
Or see this region's nucleotide sequence