Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03600

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03599 and MPMX19_03600 are separated by 327 nucleotidesMPMX19_03600 and MPMX19_03601 are separated by 26 nucleotidesMPMX19_03601 and MPMX19_03602 are separated by 13 nucleotides MPMX19_03599: MPMX19_03599 - 2-amino-5-chloromuconic acid deaminase, at 1,027,514 to 1,028,836 _03599 MPMX19_03600: MPMX19_03600 - hypothetical protein, at 1,029,164 to 1,030,720 _03600 MPMX19_03601: MPMX19_03601 - Hydantoin racemase, at 1,030,747 to 1,031,451 _03601 MPMX19_03602: MPMX19_03602 - hypothetical protein, at 1,031,465 to 1,032,292 _03602 Position (kb) 1029 1030 1031Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1028.442 kb on + strand, within MPMX19_03599at 1028.551 kb on + strand, within MPMX19_03599at 1028.718 kb on + strandat 1028.718 kb on + strandat 1028.718 kb on + strandat 1028.718 kb on + strandat 1028.718 kb on + strandat 1028.718 kb on + strandat 1028.718 kb on + strandat 1028.718 kb on + strandat 1028.719 kb on - strandat 1028.719 kb on - strandat 1028.719 kb on - strandat 1028.719 kb on - strandat 1028.719 kb on - strandat 1028.719 kb on - strandat 1028.719 kb on - strandat 1028.719 kb on - strandat 1028.719 kb on - strandat 1028.719 kb on - strandat 1028.905 kb on + strandat 1029.025 kb on + strandat 1029.025 kb on + strandat 1029.026 kb on - strandat 1029.026 kb on - strandat 1029.026 kb on - strandat 1029.026 kb on - strandat 1029.338 kb on + strand, within MPMX19_03600at 1029.368 kb on + strand, within MPMX19_03600at 1029.368 kb on + strand, within MPMX19_03600at 1029.369 kb on - strand, within MPMX19_03600at 1029.369 kb on - strand, within MPMX19_03600at 1029.369 kb on - strand, within MPMX19_03600at 1029.369 kb on - strand, within MPMX19_03600at 1029.410 kb on + strand, within MPMX19_03600at 1029.410 kb on + strand, within MPMX19_03600at 1029.411 kb on - strand, within MPMX19_03600at 1029.425 kb on + strand, within MPMX19_03600at 1029.545 kb on + strand, within MPMX19_03600at 1029.545 kb on + strand, within MPMX19_03600at 1029.545 kb on + strand, within MPMX19_03600at 1029.545 kb on + strand, within MPMX19_03600at 1029.546 kb on - strand, within MPMX19_03600at 1029.546 kb on - strand, within MPMX19_03600at 1029.546 kb on - strand, within MPMX19_03600at 1029.546 kb on - strand, within MPMX19_03600at 1029.546 kb on - strand, within MPMX19_03600at 1029.983 kb on + strand, within MPMX19_03600at 1029.983 kb on + strand, within MPMX19_03600at 1029.983 kb on + strand, within MPMX19_03600at 1029.983 kb on + strand, within MPMX19_03600at 1029.984 kb on - strand, within MPMX19_03600at 1029.984 kb on - strand, within MPMX19_03600at 1029.984 kb on - strand, within MPMX19_03600at 1029.984 kb on - strand, within MPMX19_03600at 1029.984 kb on - strand, within MPMX19_03600at 1029.984 kb on - strand, within MPMX19_03600at 1030.079 kb on + strand, within MPMX19_03600at 1030.079 kb on + strand, within MPMX19_03600at 1030.079 kb on + strand, within MPMX19_03600at 1030.080 kb on - strand, within MPMX19_03600at 1030.400 kb on + strand, within MPMX19_03600at 1030.401 kb on - strand, within MPMX19_03600at 1030.681 kb on + strandat 1030.682 kb on - strandat 1030.684 kb on + strandat 1030.685 kb on - strandat 1030.685 kb on - strandat 1030.685 kb on - strandat 1030.718 kb on + strandat 1030.718 kb on + strandat 1030.718 kb on + strandat 1030.718 kb on + strandat 1030.718 kb on + strandat 1030.718 kb on + strandat 1030.718 kb on + strandat 1030.718 kb on + strandat 1030.719 kb on - strandat 1030.719 kb on - strandat 1030.719 kb on - strandat 1030.719 kb on - strandat 1030.719 kb on - strandat 1030.719 kb on - strandat 1030.719 kb on - strandat 1030.719 kb on - strandat 1030.719 kb on - strandat 1030.731 kb on + strandat 1030.731 kb on + strandat 1030.731 kb on + strandat 1030.732 kb on - strandat 1030.732 kb on - strandat 1030.732 kb on - strandat 1030.732 kb on - strandat 1030.732 kb on - strandat 1030.775 kb on + strandat 1031.057 kb on + strand, within MPMX19_03601at 1031.058 kb on - strand, within MPMX19_03601at 1031.309 kb on + strand, within MPMX19_03601at 1031.309 kb on + strand, within MPMX19_03601at 1031.309 kb on + strand, within MPMX19_03601at 1031.309 kb on + strand, within MPMX19_03601at 1031.309 kb on + strand, within MPMX19_03601at 1031.310 kb on - strand, within MPMX19_03601at 1031.310 kb on - strand, within MPMX19_03601at 1031.310 kb on - strand, within MPMX19_03601at 1031.310 kb on - strand, within MPMX19_03601at 1031.312 kb on + strand, within MPMX19_03601at 1031.312 kb on + strand, within MPMX19_03601at 1031.312 kb on + strand, within MPMX19_03601at 1031.313 kb on - strand, within MPMX19_03601at 1031.313 kb on - strand, within MPMX19_03601at 1031.313 kb on - strand, within MPMX19_03601at 1031.313 kb on - strand, within MPMX19_03601at 1031.313 kb on - strand, within MPMX19_03601at 1031.476 kb on + strandat 1031.477 kb on - strandat 1031.571 kb on + strand, within MPMX19_03602at 1031.571 kb on + strand, within MPMX19_03602at 1031.571 kb on + strand, within MPMX19_03602at 1031.571 kb on + strand, within MPMX19_03602at 1031.571 kb on + strand, within MPMX19_03602at 1031.571 kb on + strand, within MPMX19_03602at 1031.571 kb on + strand, within MPMX19_03602at 1031.571 kb on + strand, within MPMX19_03602at 1031.571 kb on + strand, within MPMX19_03602at 1031.572 kb on - strand, within MPMX19_03602at 1031.572 kb on - strand, within MPMX19_03602at 1031.572 kb on - strand, within MPMX19_03602at 1031.572 kb on - strand, within MPMX19_03602at 1031.572 kb on - strand, within MPMX19_03602at 1031.572 kb on - strand, within MPMX19_03602at 1031.572 kb on - strand, within MPMX19_03602at 1031.572 kb on - strand, within MPMX19_03602at 1031.572 kb on - strand, within MPMX19_03602at 1031.606 kb on + strand, within MPMX19_03602at 1031.607 kb on + strand, within MPMX19_03602at 1031.607 kb on + strand, within MPMX19_03602at 1031.607 kb on + strand, within MPMX19_03602at 1031.607 kb on + strand, within MPMX19_03602at 1031.607 kb on + strand, within MPMX19_03602at 1031.607 kb on + strand, within MPMX19_03602at 1031.607 kb on + strand, within MPMX19_03602at 1031.608 kb on - strand, within MPMX19_03602at 1031.608 kb on - strand, within MPMX19_03602at 1031.608 kb on - strand, within MPMX19_03602at 1031.608 kb on - strand, within MPMX19_03602at 1031.608 kb on - strand, within MPMX19_03602at 1031.608 kb on - strand, within MPMX19_03602at 1031.670 kb on + strand, within MPMX19_03602at 1031.670 kb on + strand, within MPMX19_03602at 1031.671 kb on - strand, within MPMX19_03602at 1031.671 kb on - strand, within MPMX19_03602

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,028,442 + MPMX19_03599 0.70 -1.3
1,028,551 + MPMX19_03599 0.78 -0.9
1,028,718 + -1.7
1,028,718 + -0.3
1,028,718 + -0.0
1,028,718 + +0.5
1,028,718 + -2.0
1,028,718 + -0.7
1,028,718 + -0.2
1,028,718 + -0.6
1,028,719 - -3.0
1,028,719 - -3.1
1,028,719 - -0.0
1,028,719 - -2.2
1,028,719 - -1.8
1,028,719 - -0.1
1,028,719 - -1.2
1,028,719 - -1.0
1,028,719 - -0.7
1,028,719 - -0.5
1,028,905 + -1.3
1,029,025 + -1.2
1,029,025 + +0.5
1,029,026 - +0.4
1,029,026 - -0.1
1,029,026 - -0.1
1,029,026 - -1.9
1,029,338 + MPMX19_03600 0.11 -2.0
1,029,368 + MPMX19_03600 0.13 +0.2
1,029,368 + MPMX19_03600 0.13 -0.1
1,029,369 - MPMX19_03600 0.13 +0.2
1,029,369 - MPMX19_03600 0.13 -0.2
1,029,369 - MPMX19_03600 0.13 -0.8
1,029,369 - MPMX19_03600 0.13 -0.1
1,029,410 + MPMX19_03600 0.16 -1.8
1,029,410 + MPMX19_03600 0.16 -1.1
1,029,411 - MPMX19_03600 0.16 -0.3
1,029,425 + MPMX19_03600 0.17 +0.6
1,029,545 + MPMX19_03600 0.24 -0.3
1,029,545 + MPMX19_03600 0.24 -0.4
1,029,545 + MPMX19_03600 0.24 -0.9
1,029,545 + MPMX19_03600 0.24 +0.1
1,029,546 - MPMX19_03600 0.25 -0.3
1,029,546 - MPMX19_03600 0.25 -1.1
1,029,546 - MPMX19_03600 0.25 -0.6
1,029,546 - MPMX19_03600 0.25 +0.2
1,029,546 - MPMX19_03600 0.25 -0.5
1,029,983 + MPMX19_03600 0.53 -1.2
1,029,983 + MPMX19_03600 0.53 +0.7
1,029,983 + MPMX19_03600 0.53 -0.9
1,029,983 + MPMX19_03600 0.53 +0.1
1,029,984 - MPMX19_03600 0.53 -3.2
1,029,984 - MPMX19_03600 0.53 -3.3
1,029,984 - MPMX19_03600 0.53 +0.8
1,029,984 - MPMX19_03600 0.53 -3.3
1,029,984 - MPMX19_03600 0.53 -1.0
1,029,984 - MPMX19_03600 0.53 +0.1
1,030,079 + MPMX19_03600 0.59 -0.7
1,030,079 + MPMX19_03600 0.59 -1.3
1,030,079 + MPMX19_03600 0.59 -2.2
1,030,080 - MPMX19_03600 0.59 -0.0
1,030,400 + MPMX19_03600 0.79 +0.7
1,030,401 - MPMX19_03600 0.79 -0.4
1,030,681 + -0.9
1,030,682 - -0.2
1,030,684 + -1.0
1,030,685 - -1.2
1,030,685 - -0.0
1,030,685 - -0.9
1,030,718 + -0.7
1,030,718 + -1.1
1,030,718 + -0.6
1,030,718 + +0.0
1,030,718 + -1.2
1,030,718 + -2.9
1,030,718 + -0.3
1,030,718 + -1.1
1,030,719 - -0.6
1,030,719 - -0.7
1,030,719 - -1.0
1,030,719 - +0.4
1,030,719 - -0.6
1,030,719 - -2.0
1,030,719 - -1.1
1,030,719 - +0.9
1,030,719 - -0.2
1,030,731 + -2.2
1,030,731 + -1.2
1,030,731 + -0.0
1,030,732 - +2.0
1,030,732 - -0.9
1,030,732 - -0.3
1,030,732 - -0.5
1,030,732 - -0.2
1,030,775 + +0.4
1,031,057 + MPMX19_03601 0.44 -2.8
1,031,058 - MPMX19_03601 0.44 -2.3
1,031,309 + MPMX19_03601 0.80 -0.3
1,031,309 + MPMX19_03601 0.80 +0.4
1,031,309 + MPMX19_03601 0.80 -0.6
1,031,309 + MPMX19_03601 0.80 -0.6
1,031,309 + MPMX19_03601 0.80 -1.8
1,031,310 - MPMX19_03601 0.80 -0.7
1,031,310 - MPMX19_03601 0.80 -0.8
1,031,310 - MPMX19_03601 0.80 -0.6
1,031,310 - MPMX19_03601 0.80 -0.3
1,031,312 + MPMX19_03601 0.80 -0.6
1,031,312 + MPMX19_03601 0.80 -0.3
1,031,312 + MPMX19_03601 0.80 +0.2
1,031,313 - MPMX19_03601 0.80 -1.2
1,031,313 - MPMX19_03601 0.80 +0.4
1,031,313 - MPMX19_03601 0.80 -0.9
1,031,313 - MPMX19_03601 0.80 -1.8
1,031,313 - MPMX19_03601 0.80 -1.0
1,031,476 + -1.5
1,031,477 - -0.6
1,031,571 + MPMX19_03602 0.13 -0.3
1,031,571 + MPMX19_03602 0.13 -0.8
1,031,571 + MPMX19_03602 0.13 -1.8
1,031,571 + MPMX19_03602 0.13 -0.9
1,031,571 + MPMX19_03602 0.13 +0.6
1,031,571 + MPMX19_03602 0.13 -0.0
1,031,571 + MPMX19_03602 0.13 -0.3
1,031,571 + MPMX19_03602 0.13 -2.7
1,031,571 + MPMX19_03602 0.13 -0.2
1,031,572 - MPMX19_03602 0.13 -0.6
1,031,572 - MPMX19_03602 0.13 -0.3
1,031,572 - MPMX19_03602 0.13 -0.8
1,031,572 - MPMX19_03602 0.13 -0.9
1,031,572 - MPMX19_03602 0.13 -2.5
1,031,572 - MPMX19_03602 0.13 +0.3
1,031,572 - MPMX19_03602 0.13 -0.3
1,031,572 - MPMX19_03602 0.13 +0.4
1,031,572 - MPMX19_03602 0.13 +0.2
1,031,606 + MPMX19_03602 0.17 -0.1
1,031,607 + MPMX19_03602 0.17 -0.4
1,031,607 + MPMX19_03602 0.17 -3.3
1,031,607 + MPMX19_03602 0.17 -0.5
1,031,607 + MPMX19_03602 0.17 +0.2
1,031,607 + MPMX19_03602 0.17 -0.1
1,031,607 + MPMX19_03602 0.17 -1.6
1,031,607 + MPMX19_03602 0.17 -0.0
1,031,608 - MPMX19_03602 0.17 -0.0
1,031,608 - MPMX19_03602 0.17 -0.1
1,031,608 - MPMX19_03602 0.17 +1.0
1,031,608 - MPMX19_03602 0.17 +0.9
1,031,608 - MPMX19_03602 0.17 -1.2
1,031,608 - MPMX19_03602 0.17 -1.5
1,031,670 + MPMX19_03602 0.25 +0.7
1,031,670 + MPMX19_03602 0.25 -0.0
1,031,671 - MPMX19_03602 0.25 -1.0
1,031,671 - MPMX19_03602 0.25 -0.8

Or see this region's nucleotide sequence