Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03571

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03570 and MPMX19_03571 are separated by 34 nucleotidesMPMX19_03571 and MPMX19_03572 are separated by 22 nucleotides MPMX19_03570: MPMX19_03570 - Phenoxybenzoate dioxygenase subunit beta, at 991,432 to 992,412 _03570 MPMX19_03571: MPMX19_03571 - hypothetical protein, at 992,447 to 992,872 _03571 MPMX19_03572: MPMX19_03572 - Long-chain-fatty-acid--CoA ligase, at 992,895 to 994,412 _03572 Position (kb) 992 993Strain fitness (log2 ratio) -2 -1 0 1 2at 991.624 kb on + strand, within MPMX19_03570at 991.624 kb on + strand, within MPMX19_03570at 991.624 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.789 kb on + strand, within MPMX19_03570at 991.790 kb on - strand, within MPMX19_03570at 991.790 kb on - strand, within MPMX19_03570at 991.790 kb on - strand, within MPMX19_03570at 991.879 kb on + strand, within MPMX19_03570at 991.879 kb on + strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 991.880 kb on - strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.026 kb on + strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.027 kb on - strand, within MPMX19_03570at 992.224 kb on + strand, within MPMX19_03570at 992.225 kb on - strand, within MPMX19_03570at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.651 kb on + strand, within MPMX19_03571at 992.652 kb on - strand, within MPMX19_03571at 992.685 kb on - strand, within MPMX19_03571at 992.873 kb on + strandat 992.873 kb on + strandat 992.873 kb on + strandat 992.873 kb on + strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.874 kb on - strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.944 kb on + strandat 992.945 kb on - strandat 992.945 kb on - strandat 992.945 kb on - strandat 992.945 kb on - strandat 992.945 kb on - strandat 992.945 kb on - strandat 992.977 kb on + strandat 992.977 kb on + strandat 992.977 kb on + strandat 992.978 kb on - strandat 993.172 kb on + strand, within MPMX19_03572at 993.172 kb on + strand, within MPMX19_03572at 993.172 kb on + strand, within MPMX19_03572at 993.172 kb on + strand, within MPMX19_03572at 993.173 kb on - strand, within MPMX19_03572at 993.173 kb on - strand, within MPMX19_03572at 993.173 kb on - strand, within MPMX19_03572at 993.229 kb on + strand, within MPMX19_03572at 993.229 kb on + strand, within MPMX19_03572at 993.229 kb on + strand, within MPMX19_03572at 993.229 kb on + strand, within MPMX19_03572at 993.514 kb on + strand, within MPMX19_03572at 993.514 kb on + strand, within MPMX19_03572at 993.514 kb on + strand, within MPMX19_03572at 993.514 kb on + strand, within MPMX19_03572at 993.514 kb on + strand, within MPMX19_03572at 993.515 kb on - strand, within MPMX19_03572at 993.515 kb on - strand, within MPMX19_03572at 993.515 kb on - strand, within MPMX19_03572at 993.515 kb on - strand, within MPMX19_03572at 993.515 kb on - strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.571 kb on + strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.572 kb on - strand, within MPMX19_03572at 993.589 kb on + strand, within MPMX19_03572at 993.589 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.772 kb on + strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.773 kb on - strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.782 kb on + strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.783 kb on - strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.784 kb on + strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572at 993.785 kb on - strand, within MPMX19_03572

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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991,624 + MPMX19_03570 0.20 -0.4
991,624 + MPMX19_03570 0.20 +0.6
991,624 + MPMX19_03570 0.20 -0.0
991,789 + MPMX19_03570 0.36 -1.9
991,789 + MPMX19_03570 0.36 +0.3
991,789 + MPMX19_03570 0.36 +0.3
991,789 + MPMX19_03570 0.36 -0.3
991,789 + MPMX19_03570 0.36 -0.8
991,790 - MPMX19_03570 0.36 +0.7
991,790 - MPMX19_03570 0.36 -0.2
991,790 - MPMX19_03570 0.36 -0.8
991,879 + MPMX19_03570 0.46 -0.3
991,879 + MPMX19_03570 0.46 +0.2
991,880 - MPMX19_03570 0.46 -0.3
991,880 - MPMX19_03570 0.46 -1.3
991,880 - MPMX19_03570 0.46 -0.3
991,880 - MPMX19_03570 0.46 +1.6
992,026 + MPMX19_03570 0.61 -0.2
992,026 + MPMX19_03570 0.61 +0.1
992,026 + MPMX19_03570 0.61 +0.3
992,026 + MPMX19_03570 0.61 -1.6
992,026 + MPMX19_03570 0.61 -0.5
992,026 + MPMX19_03570 0.61 +1.2
992,027 - MPMX19_03570 0.61 -0.0
992,027 - MPMX19_03570 0.61 -0.7
992,027 - MPMX19_03570 0.61 -0.9
992,027 - MPMX19_03570 0.61 -0.7
992,027 - MPMX19_03570 0.61 -0.5
992,027 - MPMX19_03570 0.61 -0.6
992,027 - MPMX19_03570 0.61 -2.0
992,224 + MPMX19_03570 0.81 -1.0
992,225 - MPMX19_03570 0.81 +0.5
992,651 + MPMX19_03571 0.48 +1.4
992,651 + MPMX19_03571 0.48 +0.4
992,651 + MPMX19_03571 0.48 -0.8
992,651 + MPMX19_03571 0.48 -0.3
992,651 + MPMX19_03571 0.48 -0.5
992,651 + MPMX19_03571 0.48 +0.3
992,651 + MPMX19_03571 0.48 -0.4
992,652 - MPMX19_03571 0.48 +0.1
992,685 - MPMX19_03571 0.56 -1.0
992,873 + -0.4
992,873 + -0.9
992,873 + -0.8
992,873 + +0.7
992,874 - -0.9
992,874 - -2.3
992,874 - +0.6
992,874 - -0.1
992,874 - -0.2
992,874 - -0.6
992,874 - -0.8
992,944 + -0.9
992,944 + -0.5
992,944 + -1.2
992,944 + -1.2
992,944 + +0.6
992,944 + -0.8
992,944 + -2.0
992,944 + -0.3
992,944 + -1.5
992,944 + -1.3
992,944 + +0.8
992,944 + -0.2
992,945 - -0.4
992,945 - -0.0
992,945 - +0.5
992,945 - +0.4
992,945 - +0.4
992,945 - -1.5
992,977 + -0.2
992,977 + -0.8
992,977 + -0.1
992,978 - -1.0
993,172 + MPMX19_03572 0.18 -0.4
993,172 + MPMX19_03572 0.18 -2.3
993,172 + MPMX19_03572 0.18 +0.8
993,172 + MPMX19_03572 0.18 -0.9
993,173 - MPMX19_03572 0.18 +0.4
993,173 - MPMX19_03572 0.18 -0.8
993,173 - MPMX19_03572 0.18 -0.7
993,229 + MPMX19_03572 0.22 -1.2
993,229 + MPMX19_03572 0.22 -1.9
993,229 + MPMX19_03572 0.22 -0.3
993,229 + MPMX19_03572 0.22 -1.3
993,514 + MPMX19_03572 0.41 +0.1
993,514 + MPMX19_03572 0.41 -0.8
993,514 + MPMX19_03572 0.41 +0.1
993,514 + MPMX19_03572 0.41 -1.9
993,514 + MPMX19_03572 0.41 -0.0
993,515 - MPMX19_03572 0.41 -0.1
993,515 - MPMX19_03572 0.41 -1.0
993,515 - MPMX19_03572 0.41 +0.7
993,515 - MPMX19_03572 0.41 -0.5
993,515 - MPMX19_03572 0.41 -1.5
993,571 + MPMX19_03572 0.45 -0.5
993,571 + MPMX19_03572 0.45 -0.6
993,571 + MPMX19_03572 0.45 -0.9
993,571 + MPMX19_03572 0.45 -0.7
993,571 + MPMX19_03572 0.45 +0.3
993,571 + MPMX19_03572 0.45 -1.1
993,571 + MPMX19_03572 0.45 -0.8
993,571 + MPMX19_03572 0.45 -0.6
993,571 + MPMX19_03572 0.45 -0.0
993,571 + MPMX19_03572 0.45 -0.1
993,571 + MPMX19_03572 0.45 +0.6
993,571 + MPMX19_03572 0.45 +1.0
993,571 + MPMX19_03572 0.45 -0.8
993,571 + MPMX19_03572 0.45 +0.4
993,571 + MPMX19_03572 0.45 -1.7
993,571 + MPMX19_03572 0.45 -1.0
993,571 + MPMX19_03572 0.45 -1.3
993,571 + MPMX19_03572 0.45 -0.7
993,571 + MPMX19_03572 0.45 -1.6
993,571 + MPMX19_03572 0.45 -0.5
993,571 + MPMX19_03572 0.45 +0.3
993,571 + MPMX19_03572 0.45 -0.8
993,571 + MPMX19_03572 0.45 +1.0
993,571 + MPMX19_03572 0.45 -0.0
993,571 + MPMX19_03572 0.45 -1.6
993,571 + MPMX19_03572 0.45 +2.7
993,571 + MPMX19_03572 0.45 -0.9
993,572 - MPMX19_03572 0.45 -0.5
993,572 - MPMX19_03572 0.45 +0.1
993,572 - MPMX19_03572 0.45 -1.2
993,572 - MPMX19_03572 0.45 -1.2
993,572 - MPMX19_03572 0.45 +0.4
993,572 - MPMX19_03572 0.45 -0.8
993,572 - MPMX19_03572 0.45 -0.2
993,572 - MPMX19_03572 0.45 -1.3
993,572 - MPMX19_03572 0.45 +0.4
993,572 - MPMX19_03572 0.45 -0.6
993,572 - MPMX19_03572 0.45 -0.0
993,572 - MPMX19_03572 0.45 -1.1
993,572 - MPMX19_03572 0.45 -2.2
993,572 - MPMX19_03572 0.45 -0.8
993,572 - MPMX19_03572 0.45 -1.8
993,572 - MPMX19_03572 0.45 -0.5
993,572 - MPMX19_03572 0.45 -1.5
993,572 - MPMX19_03572 0.45 -0.0
993,572 - MPMX19_03572 0.45 -0.7
993,572 - MPMX19_03572 0.45 +0.5
993,589 + MPMX19_03572 0.46 -1.1
993,589 + MPMX19_03572 0.46 -0.9
993,772 + MPMX19_03572 0.58 -1.5
993,772 + MPMX19_03572 0.58 +1.1
993,772 + MPMX19_03572 0.58 -0.5
993,772 + MPMX19_03572 0.58 -1.2
993,772 + MPMX19_03572 0.58 -0.8
993,772 + MPMX19_03572 0.58 -0.3
993,772 + MPMX19_03572 0.58 -0.3
993,772 + MPMX19_03572 0.58 +0.3
993,772 + MPMX19_03572 0.58 -0.2
993,772 + MPMX19_03572 0.58 -0.1
993,772 + MPMX19_03572 0.58 -0.6
993,772 + MPMX19_03572 0.58 +0.8
993,773 - MPMX19_03572 0.58 +0.3
993,773 - MPMX19_03572 0.58 -1.0
993,773 - MPMX19_03572 0.58 -0.3
993,773 - MPMX19_03572 0.58 -0.6
993,773 - MPMX19_03572 0.58 +0.4
993,773 - MPMX19_03572 0.58 -0.3
993,773 - MPMX19_03572 0.58 -0.3
993,773 - MPMX19_03572 0.58 -0.2
993,782 + MPMX19_03572 0.58 +1.0
993,782 + MPMX19_03572 0.58 -0.8
993,782 + MPMX19_03572 0.58 -1.0
993,782 + MPMX19_03572 0.58 -1.2
993,782 + MPMX19_03572 0.58 -1.3
993,782 + MPMX19_03572 0.58 -0.2
993,783 - MPMX19_03572 0.58 -0.3
993,783 - MPMX19_03572 0.58 -1.2
993,783 - MPMX19_03572 0.58 +0.3
993,783 - MPMX19_03572 0.58 +0.2
993,783 - MPMX19_03572 0.58 -0.1
993,783 - MPMX19_03572 0.58 -0.6
993,783 - MPMX19_03572 0.58 -0.0
993,783 - MPMX19_03572 0.58 -0.7
993,784 + MPMX19_03572 0.59 -0.0
993,784 + MPMX19_03572 0.59 -1.4
993,784 + MPMX19_03572 0.59 -0.0
993,784 + MPMX19_03572 0.59 -0.7
993,784 + MPMX19_03572 0.59 -0.4
993,784 + MPMX19_03572 0.59 +1.0
993,784 + MPMX19_03572 0.59 -0.7
993,784 + MPMX19_03572 0.59 +2.0
993,784 + MPMX19_03572 0.59 -0.4
993,784 + MPMX19_03572 0.59 +0.5
993,784 + MPMX19_03572 0.59 -1.9
993,784 + MPMX19_03572 0.59 -1.3
993,784 + MPMX19_03572 0.59 -0.0
993,784 + MPMX19_03572 0.59 +0.2
993,784 + MPMX19_03572 0.59 +1.0
993,784 + MPMX19_03572 0.59 -1.8
993,784 + MPMX19_03572 0.59 -0.6
993,784 + MPMX19_03572 0.59 -0.3
993,784 + MPMX19_03572 0.59 -0.6
993,784 + MPMX19_03572 0.59 -1.6
993,784 + MPMX19_03572 0.59 -0.5
993,784 + MPMX19_03572 0.59 -1.8
993,785 - MPMX19_03572 0.59 -2.1
993,785 - MPMX19_03572 0.59 +0.7
993,785 - MPMX19_03572 0.59 -0.8
993,785 - MPMX19_03572 0.59 -1.1
993,785 - MPMX19_03572 0.59 +0.4
993,785 - MPMX19_03572 0.59 -0.7
993,785 - MPMX19_03572 0.59 +0.1
993,785 - MPMX19_03572 0.59 -1.3
993,785 - MPMX19_03572 0.59 -0.3
993,785 - MPMX19_03572 0.59 -0.0
993,785 - MPMX19_03572 0.59 +0.1
993,785 - MPMX19_03572 0.59 +0.9
993,785 - MPMX19_03572 0.59 -1.6
993,785 - MPMX19_03572 0.59 -0.9
993,785 - MPMX19_03572 0.59 -0.4
993,785 - MPMX19_03572 0.59 -1.6
993,785 - MPMX19_03572 0.59 +0.4
993,785 - MPMX19_03572 0.59 -2.3

Or see this region's nucleotide sequence