Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03546 and MPMX19_03547 are separated by 160 nucleotides MPMX19_03547 and MPMX19_03548 are separated by 62 nucleotides MPMX19_03548 and MPMX19_03549 are separated by 123 nucleotides
MPMX19_03546: MPMX19_03546 - Succinyl-diaminopimelate desuccinylase, at 966,678 to 968,225
_03546
MPMX19_03547: MPMX19_03547 - putative oxidoreductase, at 968,386 to 969,111
_03547
MPMX19_03548: MPMX19_03548 - Dihydroanticapsin 7-dehydrogenase, at 969,174 to 969,926
_03548
MPMX19_03549: MPMX19_03549 - HTH-type transcriptional regulator PgrR, at 970,050 to 970,958
_03549
Position (kb)
968
969
970 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.423 kb on + strand, within MPMX19_03546 at 967.424 kb on - strand, within MPMX19_03546 at 967.777 kb on + strand, within MPMX19_03546 at 967.777 kb on + strand, within MPMX19_03546 at 967.777 kb on + strand, within MPMX19_03546 at 967.777 kb on + strand, within MPMX19_03546 at 967.777 kb on + strand, within MPMX19_03546 at 967.778 kb on - strand, within MPMX19_03546 at 967.778 kb on - strand, within MPMX19_03546 at 967.778 kb on - strand, within MPMX19_03546 at 967.900 kb on + strand, within MPMX19_03546 at 967.900 kb on + strand, within MPMX19_03546 at 967.900 kb on + strand, within MPMX19_03546 at 967.900 kb on + strand, within MPMX19_03546 at 967.900 kb on + strand, within MPMX19_03546 at 967.900 kb on + strand, within MPMX19_03546 at 967.900 kb on + strand, within MPMX19_03546 at 967.900 kb on + strand, within MPMX19_03546 at 967.900 kb on + strand, within MPMX19_03546 at 967.900 kb on + strand, within MPMX19_03546 at 967.901 kb on - strand, within MPMX19_03546 at 967.901 kb on - strand, within MPMX19_03546 at 967.901 kb on - strand, within MPMX19_03546 at 967.901 kb on - strand, within MPMX19_03546 at 967.901 kb on - strand, within MPMX19_03546 at 968.095 kb on + strand at 968.126 kb on + strand at 968.237 kb on + strand at 968.237 kb on + strand at 968.252 kb on + strand at 968.502 kb on - strand, within MPMX19_03547 at 968.573 kb on + strand, within MPMX19_03547 at 968.573 kb on + strand, within MPMX19_03547 at 968.574 kb on - strand, within MPMX19_03547 at 968.574 kb on - strand, within MPMX19_03547 at 968.574 kb on - strand, within MPMX19_03547 at 968.574 kb on - strand, within MPMX19_03547 at 968.654 kb on + strand, within MPMX19_03547 at 968.654 kb on + strand, within MPMX19_03547 at 968.655 kb on - strand, within MPMX19_03547 at 968.655 kb on - strand, within MPMX19_03547 at 968.655 kb on - strand, within MPMX19_03547 at 968.711 kb on + strand, within MPMX19_03547 at 968.711 kb on + strand, within MPMX19_03547 at 968.712 kb on - strand, within MPMX19_03547 at 968.712 kb on - strand, within MPMX19_03547 at 968.712 kb on - strand, within MPMX19_03547 at 968.712 kb on - strand, within MPMX19_03547 at 968.712 kb on - strand, within MPMX19_03547 at 969.124 kb on + strand at 969.124 kb on + strand at 969.125 kb on - strand at 969.137 kb on - strand at 969.137 kb on - strand at 969.188 kb on - strand at 969.412 kb on + strand, within MPMX19_03548 at 969.413 kb on - strand, within MPMX19_03548 at 969.413 kb on - strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.466 kb on + strand, within MPMX19_03548 at 969.467 kb on - strand, within MPMX19_03548 at 969.467 kb on - strand, within MPMX19_03548 at 969.467 kb on - strand, within MPMX19_03548 at 969.467 kb on - strand, within MPMX19_03548 at 969.467 kb on - strand, within MPMX19_03548 at 969.610 kb on + strand, within MPMX19_03548 at 969.610 kb on + strand, within MPMX19_03548 at 969.610 kb on + strand, within MPMX19_03548 at 969.610 kb on + strand, within MPMX19_03548 at 969.610 kb on + strand, within MPMX19_03548 at 969.611 kb on - strand, within MPMX19_03548 at 969.611 kb on - strand, within MPMX19_03548 at 969.611 kb on - strand, within MPMX19_03548 at 969.611 kb on - strand, within MPMX19_03548 at 969.611 kb on - strand, within MPMX19_03548 at 969.904 kb on + strand at 969.904 kb on + strand at 969.904 kb on + strand at 969.904 kb on + strand at 969.904 kb on + strand at 969.904 kb on + strand at 969.904 kb on + strand at 969.905 kb on - strand at 969.905 kb on - strand at 969.905 kb on - strand at 969.905 kb on - strand at 969.905 kb on - strand at 969.905 kb on - strand at 969.957 kb on + strand at 969.958 kb on - strand at 969.958 kb on - strand at 969.958 kb on - strand at 970.035 kb on + strand at 970.044 kb on + strand at 970.063 kb on + strand at 970.063 kb on + strand at 970.064 kb on - strand at 970.064 kb on - strand at 970.064 kb on - strand at 970.064 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 967,423 + MPMX19_03546 0.48 -0.6 967,423 + MPMX19_03546 0.48 -1.4 967,423 + MPMX19_03546 0.48 -0.9 967,423 + MPMX19_03546 0.48 -0.8 967,423 + MPMX19_03546 0.48 -0.1 967,423 + MPMX19_03546 0.48 -0.6 967,423 + MPMX19_03546 0.48 -0.4 967,423 + MPMX19_03546 0.48 -0.0 967,424 - MPMX19_03546 0.48 +0.1 967,777 + MPMX19_03546 0.71 -0.1 967,777 + MPMX19_03546 0.71 -2.6 967,777 + MPMX19_03546 0.71 -0.4 967,777 + MPMX19_03546 0.71 -0.7 967,777 + MPMX19_03546 0.71 -0.8 967,778 - MPMX19_03546 0.71 +0.1 967,778 - MPMX19_03546 0.71 +0.8 967,778 - MPMX19_03546 0.71 -0.4 967,900 + MPMX19_03546 0.79 -0.3 967,900 + MPMX19_03546 0.79 +0.9 967,900 + MPMX19_03546 0.79 +1.4 967,900 + MPMX19_03546 0.79 -0.1 967,900 + MPMX19_03546 0.79 -3.1 967,900 + MPMX19_03546 0.79 -0.7 967,900 + MPMX19_03546 0.79 -0.5 967,900 + MPMX19_03546 0.79 -2.1 967,900 + MPMX19_03546 0.79 -1.6 967,900 + MPMX19_03546 0.79 +0.1 967,901 - MPMX19_03546 0.79 -1.0 967,901 - MPMX19_03546 0.79 -0.3 967,901 - MPMX19_03546 0.79 +2.0 967,901 - MPMX19_03546 0.79 -0.5 967,901 - MPMX19_03546 0.79 -1.6 968,095 + -1.3 968,126 + -2.3 968,237 + -2.0 968,237 + -1.5 968,252 + -1.2 968,502 - MPMX19_03547 0.16 +0.8 968,573 + MPMX19_03547 0.26 +0.3 968,573 + MPMX19_03547 0.26 -0.4 968,574 - MPMX19_03547 0.26 +1.0 968,574 - MPMX19_03547 0.26 -0.6 968,574 - MPMX19_03547 0.26 +0.3 968,574 - MPMX19_03547 0.26 -0.9 968,654 + MPMX19_03547 0.37 +0.4 968,654 + MPMX19_03547 0.37 -0.8 968,655 - MPMX19_03547 0.37 -0.6 968,655 - MPMX19_03547 0.37 -0.7 968,655 - MPMX19_03547 0.37 +0.4 968,711 + MPMX19_03547 0.45 -0.4 968,711 + MPMX19_03547 0.45 -1.0 968,712 - MPMX19_03547 0.45 -0.0 968,712 - MPMX19_03547 0.45 -1.0 968,712 - MPMX19_03547 0.45 -0.2 968,712 - MPMX19_03547 0.45 -1.0 968,712 - MPMX19_03547 0.45 +0.4 969,124 + -1.0 969,124 + +0.5 969,125 - -0.0 969,137 - -1.9 969,137 - +0.5 969,188 - +0.1 969,412 + MPMX19_03548 0.32 -1.1 969,413 - MPMX19_03548 0.32 -2.7 969,413 - MPMX19_03548 0.32 -2.1 969,466 + MPMX19_03548 0.39 -0.6 969,466 + MPMX19_03548 0.39 +0.1 969,466 + MPMX19_03548 0.39 -0.8 969,466 + MPMX19_03548 0.39 -0.1 969,466 + MPMX19_03548 0.39 +0.7 969,466 + MPMX19_03548 0.39 -0.6 969,466 + MPMX19_03548 0.39 -0.0 969,466 + MPMX19_03548 0.39 -0.5 969,466 + MPMX19_03548 0.39 +0.6 969,466 + MPMX19_03548 0.39 -1.5 969,466 + MPMX19_03548 0.39 -0.8 969,466 + MPMX19_03548 0.39 +0.4 969,466 + MPMX19_03548 0.39 -0.8 969,466 + MPMX19_03548 0.39 +0.7 969,467 - MPMX19_03548 0.39 +0.4 969,467 - MPMX19_03548 0.39 +0.2 969,467 - MPMX19_03548 0.39 -1.6 969,467 - MPMX19_03548 0.39 -0.7 969,467 - MPMX19_03548 0.39 -0.3 969,610 + MPMX19_03548 0.58 -0.3 969,610 + MPMX19_03548 0.58 -1.0 969,610 + MPMX19_03548 0.58 -1.2 969,610 + MPMX19_03548 0.58 -0.7 969,610 + MPMX19_03548 0.58 +0.7 969,611 - MPMX19_03548 0.58 -1.9 969,611 - MPMX19_03548 0.58 -1.7 969,611 - MPMX19_03548 0.58 -0.8 969,611 - MPMX19_03548 0.58 +1.3 969,611 - MPMX19_03548 0.58 +0.8 969,904 + -1.2 969,904 + -1.3 969,904 + +0.2 969,904 + -0.2 969,904 + +1.0 969,904 + -1.1 969,904 + +0.2 969,905 - -1.7 969,905 - -0.6 969,905 - -0.6 969,905 - -1.1 969,905 - -0.6 969,905 - -0.6 969,957 + -1.2 969,958 - -1.7 969,958 - -0.9 969,958 - -0.3 970,035 + -0.7 970,044 + -0.2 970,063 + -1.4 970,063 + -1.2 970,064 - -0.3 970,064 - -1.3 970,064 - -1.2 970,064 - -1.5
Or see this region's nucleotide sequence