Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03538

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03536 and MPMX19_03537 overlap by 1 nucleotidesMPMX19_03537 and MPMX19_03538 are separated by 69 nucleotidesMPMX19_03538 and MPMX19_03539 are separated by 104 nucleotides MPMX19_03536: MPMX19_03536 - Lipopolysaccharide export system ATP-binding protein LptB, at 955,506 to 956,261 _03536 MPMX19_03537: MPMX19_03537 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 956,261 to 956,962 _03537 MPMX19_03538: MPMX19_03538 - HTH-type transcriptional repressor NagR, at 957,032 to 957,781 _03538 MPMX19_03539: MPMX19_03539 - Acetylornithine deacetylase, at 957,886 to 959,259 _03539 Position (kb) 957 958Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 956.169 kb on + strand, within MPMX19_03536at 956.169 kb on + strand, within MPMX19_03536at 956.169 kb on + strand, within MPMX19_03536at 956.169 kb on + strand, within MPMX19_03536at 956.170 kb on - strand, within MPMX19_03536at 956.170 kb on - strand, within MPMX19_03536at 956.170 kb on - strand, within MPMX19_03536at 956.235 kb on + strandat 956.235 kb on + strandat 956.235 kb on + strandat 956.235 kb on + strandat 956.236 kb on - strandat 956.291 kb on + strandat 956.292 kb on - strandat 956.400 kb on + strand, within MPMX19_03537at 956.401 kb on - strand, within MPMX19_03537at 956.401 kb on - strand, within MPMX19_03537at 956.401 kb on - strand, within MPMX19_03537at 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.948 kb on + strandat 956.949 kb on - strandat 956.949 kb on - strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.051 kb on + strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.052 kb on - strandat 957.255 kb on + strand, within MPMX19_03538at 957.255 kb on + strand, within MPMX19_03538at 957.256 kb on - strand, within MPMX19_03538at 957.256 kb on - strand, within MPMX19_03538at 957.256 kb on - strand, within MPMX19_03538at 957.498 kb on + strand, within MPMX19_03538at 957.499 kb on - strand, within MPMX19_03538at 957.499 kb on - strand, within MPMX19_03538at 957.501 kb on + strand, within MPMX19_03538at 957.501 kb on + strand, within MPMX19_03538at 957.502 kb on - strand, within MPMX19_03538at 957.860 kb on - strandat 957.936 kb on + strandat 958.033 kb on + strand, within MPMX19_03539at 958.201 kb on + strand, within MPMX19_03539at 958.201 kb on + strand, within MPMX19_03539at 958.202 kb on - strand, within MPMX19_03539at 958.202 kb on - strand, within MPMX19_03539at 958.202 kb on - strand, within MPMX19_03539at 958.202 kb on - strand, within MPMX19_03539at 958.282 kb on + strand, within MPMX19_03539at 958.283 kb on - strand, within MPMX19_03539at 958.283 kb on - strand, within MPMX19_03539at 958.372 kb on + strand, within MPMX19_03539at 958.372 kb on + strand, within MPMX19_03539at 958.432 kb on + strand, within MPMX19_03539at 958.432 kb on + strand, within MPMX19_03539at 958.432 kb on + strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.433 kb on - strand, within MPMX19_03539at 958.465 kb on - strand, within MPMX19_03539

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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956,169 + MPMX19_03536 0.88 -1.3
956,169 + MPMX19_03536 0.88 -3.0
956,169 + MPMX19_03536 0.88 -0.0
956,169 + MPMX19_03536 0.88 -0.5
956,170 - MPMX19_03536 0.88 +1.0
956,170 - MPMX19_03536 0.88 -1.0
956,170 - MPMX19_03536 0.88 -1.5
956,235 + +1.7
956,235 + -0.0
956,235 + -0.1
956,235 + -2.7
956,236 - -0.6
956,291 + -1.0
956,292 - -0.7
956,400 + MPMX19_03537 0.20 -1.3
956,401 - MPMX19_03537 0.20 +1.0
956,401 - MPMX19_03537 0.20 -1.8
956,401 - MPMX19_03537 0.20 -0.7
956,948 + +0.6
956,948 + -2.1
956,948 + -0.6
956,948 + -0.3
956,948 + -0.6
956,948 + +1.4
956,948 + -1.6
956,948 + -0.9
956,949 - -0.6
956,949 - -1.6
957,051 + -0.8
957,051 + +1.0
957,051 + -0.4
957,051 + -1.1
957,051 + +0.2
957,051 + -0.2
957,051 + +0.7
957,051 + -1.2
957,051 + +1.3
957,051 + -1.0
957,051 + -0.5
957,051 + +0.4
957,051 + -0.4
957,052 - -0.8
957,052 - -0.5
957,052 - +1.2
957,052 - -2.1
957,052 - +0.1
957,052 - +0.8
957,052 - -0.3
957,052 - -1.2
957,052 - +1.0
957,052 - +0.6
957,052 - -0.1
957,052 - -0.5
957,052 - -1.0
957,052 - +0.5
957,052 - +2.6
957,052 - -0.9
957,052 - -0.6
957,255 + MPMX19_03538 0.30 +0.4
957,255 + MPMX19_03538 0.30 -0.4
957,256 - MPMX19_03538 0.30 -1.8
957,256 - MPMX19_03538 0.30 -0.3
957,256 - MPMX19_03538 0.30 +0.1
957,498 + MPMX19_03538 0.62 +0.5
957,499 - MPMX19_03538 0.62 -1.5
957,499 - MPMX19_03538 0.62 -0.9
957,501 + MPMX19_03538 0.63 -0.1
957,501 + MPMX19_03538 0.63 +1.4
957,502 - MPMX19_03538 0.63 -0.6
957,860 - -1.7
957,936 + +0.2
958,033 + MPMX19_03539 0.11 -0.5
958,201 + MPMX19_03539 0.23 -0.3
958,201 + MPMX19_03539 0.23 -1.0
958,202 - MPMX19_03539 0.23 -0.9
958,202 - MPMX19_03539 0.23 -0.4
958,202 - MPMX19_03539 0.23 -1.5
958,202 - MPMX19_03539 0.23 -0.5
958,282 + MPMX19_03539 0.29 -0.2
958,283 - MPMX19_03539 0.29 +0.1
958,283 - MPMX19_03539 0.29 -2.5
958,372 + MPMX19_03539 0.35 -0.7
958,372 + MPMX19_03539 0.35 +1.0
958,432 + MPMX19_03539 0.40 -1.7
958,432 + MPMX19_03539 0.40 -2.3
958,432 + MPMX19_03539 0.40 -0.3
958,433 - MPMX19_03539 0.40 +0.2
958,433 - MPMX19_03539 0.40 +0.1
958,433 - MPMX19_03539 0.40 -0.1
958,433 - MPMX19_03539 0.40 -0.2
958,465 - MPMX19_03539 0.42 -0.2

Or see this region's nucleotide sequence