Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03534 and MPMX19_03535 overlap by 4 nucleotides MPMX19_03535 and MPMX19_03536 overlap by 8 nucleotides MPMX19_03536 and MPMX19_03537 overlap by 1 nucleotides MPMX19_03537 and MPMX19_03538 are separated by 69 nucleotides
MPMX19_03534: MPMX19_03534 - High-affinity branched-chain amino acid transport system permease protein LivH, at 953,595 to 954,527
_03534
MPMX19_03535: MPMX19_03535 - hypothetical protein, at 954,524 to 955,513
_03535
MPMX19_03536: MPMX19_03536 - Lipopolysaccharide export system ATP-binding protein LptB, at 955,506 to 956,261
_03536
MPMX19_03537: MPMX19_03537 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 956,261 to 956,962
_03537
MPMX19_03538: MPMX19_03538 - HTH-type transcriptional repressor NagR, at 957,032 to 957,781
_03538
Position (kb) 955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 954.746 kb on + strand, within MPMX19_03535 at 954.747 kb on - strand, within MPMX19_03535 at 954.827 kb on + strand, within MPMX19_03535 at 954.827 kb on + strand, within MPMX19_03535 at 954.827 kb on + strand, within MPMX19_03535 at 954.828 kb on - strand, within MPMX19_03535 at 954.957 kb on - strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.965 kb on + strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 954.966 kb on - strand, within MPMX19_03535 at 955.151 kb on + strand, within MPMX19_03535 at 955.158 kb on - strand, within MPMX19_03535 at 955.172 kb on + strand, within MPMX19_03535 at 955.172 kb on + strand, within MPMX19_03535 at 955.173 kb on - strand, within MPMX19_03535 at 955.379 kb on + strand, within MPMX19_03535 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.912 kb on + strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 955.913 kb on - strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.169 kb on + strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.170 kb on - strand, within MPMX19_03536 at 956.235 kb on + strand at 956.235 kb on + strand at 956.235 kb on + strand at 956.235 kb on + strand at 956.236 kb on - strand at 956.291 kb on + strand at 956.292 kb on - strand at 956.400 kb on + strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.401 kb on - strand, within MPMX19_03537 at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.948 kb on + strand at 956.949 kb on - strand at 956.949 kb on - strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.051 kb on + strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.052 kb on - strand at 957.255 kb on + strand, within MPMX19_03538 at 957.255 kb on + strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538 at 957.256 kb on - strand, within MPMX19_03538
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 954,746 + MPMX19_03535 0.22 -0.5 954,747 - MPMX19_03535 0.23 -0.7 954,827 + MPMX19_03535 0.31 -0.8 954,827 + MPMX19_03535 0.31 +0.4 954,827 + MPMX19_03535 0.31 -0.3 954,828 - MPMX19_03535 0.31 +0.7 954,957 - MPMX19_03535 0.44 +1.4 954,965 + MPMX19_03535 0.45 -0.5 954,965 + MPMX19_03535 0.45 +1.7 954,965 + MPMX19_03535 0.45 -0.6 954,965 + MPMX19_03535 0.45 -1.8 954,965 + MPMX19_03535 0.45 -1.3 954,966 - MPMX19_03535 0.45 -1.6 954,966 - MPMX19_03535 0.45 -1.2 954,966 - MPMX19_03535 0.45 -0.7 954,966 - MPMX19_03535 0.45 -0.1 954,966 - MPMX19_03535 0.45 -0.2 954,966 - MPMX19_03535 0.45 +0.4 954,966 - MPMX19_03535 0.45 -2.1 954,966 - MPMX19_03535 0.45 -1.1 954,966 - MPMX19_03535 0.45 -2.0 955,151 + MPMX19_03535 0.63 +0.8 955,158 - MPMX19_03535 0.64 -0.3 955,172 + MPMX19_03535 0.65 -0.2 955,172 + MPMX19_03535 0.65 -0.3 955,173 - MPMX19_03535 0.66 -0.2 955,379 + MPMX19_03535 0.86 -0.0 955,912 + MPMX19_03536 0.54 -0.3 955,912 + MPMX19_03536 0.54 -1.3 955,912 + MPMX19_03536 0.54 -1.2 955,912 + MPMX19_03536 0.54 +0.6 955,912 + MPMX19_03536 0.54 -0.3 955,913 - MPMX19_03536 0.54 -0.8 955,913 - MPMX19_03536 0.54 -1.0 955,913 - MPMX19_03536 0.54 +0.2 956,169 + MPMX19_03536 0.88 -1.3 956,169 + MPMX19_03536 0.88 -3.0 956,169 + MPMX19_03536 0.88 -0.0 956,169 + MPMX19_03536 0.88 -0.5 956,170 - MPMX19_03536 0.88 +1.0 956,170 - MPMX19_03536 0.88 -1.0 956,170 - MPMX19_03536 0.88 -1.5 956,235 + +1.7 956,235 + -0.0 956,235 + -0.1 956,235 + -2.7 956,236 - -0.6 956,291 + -1.0 956,292 - -0.7 956,400 + MPMX19_03537 0.20 -1.3 956,401 - MPMX19_03537 0.20 +1.0 956,401 - MPMX19_03537 0.20 -1.8 956,401 - MPMX19_03537 0.20 -0.7 956,948 + +0.6 956,948 + -2.1 956,948 + -0.6 956,948 + -0.3 956,948 + -0.6 956,948 + +1.4 956,948 + -1.6 956,948 + -0.9 956,949 - -0.6 956,949 - -1.6 957,051 + -0.8 957,051 + +1.0 957,051 + -0.4 957,051 + -1.1 957,051 + +0.2 957,051 + -0.2 957,051 + +0.7 957,051 + -1.2 957,051 + +1.3 957,051 + -1.0 957,051 + -0.5 957,051 + +0.4 957,051 + -0.4 957,052 - -0.8 957,052 - -0.5 957,052 - +1.2 957,052 - -2.1 957,052 - +0.1 957,052 - +0.8 957,052 - -0.3 957,052 - -1.2 957,052 - +1.0 957,052 - +0.6 957,052 - -0.1 957,052 - -0.5 957,052 - -1.0 957,052 - +0.5 957,052 - +2.6 957,052 - -0.9 957,052 - -0.6 957,255 + MPMX19_03538 0.30 +0.4 957,255 + MPMX19_03538 0.30 -0.4 957,256 - MPMX19_03538 0.30 -1.8 957,256 - MPMX19_03538 0.30 -0.3 957,256 - MPMX19_03538 0.30 +0.1
Or see this region's nucleotide sequence