Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03532

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03531 and MPMX19_03532 are separated by 94 nucleotidesMPMX19_03532 and MPMX19_03533 are separated by 297 nucleotides MPMX19_03531: MPMX19_03531 - PCP degradation transcriptional activation protein, at 950,568 to 951,506 _03531 MPMX19_03532: MPMX19_03532 - hypothetical protein, at 951,601 to 952,068 _03532 MPMX19_03533: MPMX19_03533 - hypothetical protein, at 952,366 to 953,562 _03533 Position (kb) 951 952 953Strain fitness (log2 ratio) -2 -1 0 1at 950.815 kb on + strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 951.209 kb on + strand, within MPMX19_03531at 951.525 kb on + strandat 951.587 kb on + strandat 951.588 kb on - strandat 951.588 kb on - strandat 951.618 kb on + strandat 951.618 kb on + strandat 951.619 kb on - strandat 951.673 kb on + strand, within MPMX19_03532at 951.673 kb on + strand, within MPMX19_03532at 952.066 kb on + strandat 952.067 kb on - strandat 952.329 kb on + strandat 952.329 kb on + strandat 952.329 kb on + strandat 952.329 kb on + strandat 952.330 kb on - strandat 952.330 kb on - strandat 952.330 kb on - strandat 952.330 kb on - strandat 952.330 kb on - strandat 952.819 kb on + strand, within MPMX19_03533at 952.820 kb on - strand, within MPMX19_03533at 952.820 kb on - strand, within MPMX19_03533at 952.820 kb on - strand, within MPMX19_03533at 952.873 kb on + strand, within MPMX19_03533at 952.873 kb on + strand, within MPMX19_03533at 952.873 kb on + strand, within MPMX19_03533at 952.874 kb on - strand, within MPMX19_03533at 952.903 kb on + strand, within MPMX19_03533at 952.903 kb on + strand, within MPMX19_03533at 952.903 kb on + strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.904 kb on - strand, within MPMX19_03533at 952.945 kb on + strand, within MPMX19_03533at 952.945 kb on + strand, within MPMX19_03533at 952.945 kb on + strand, within MPMX19_03533at 952.946 kb on - strand, within MPMX19_03533at 952.946 kb on - strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.972 kb on + strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533at 952.973 kb on - strand, within MPMX19_03533

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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950,815 + MPMX19_03531 0.26 +0.2
950,816 - MPMX19_03531 0.26 -1.3
950,816 - MPMX19_03531 0.26 -0.0
950,816 - MPMX19_03531 0.26 -1.3
950,816 - MPMX19_03531 0.26 +0.8
950,887 + MPMX19_03531 0.34 -0.5
950,887 + MPMX19_03531 0.34 +1.3
950,887 + MPMX19_03531 0.34 -1.0
950,887 + MPMX19_03531 0.34 -1.8
950,888 - MPMX19_03531 0.34 +1.1
950,888 - MPMX19_03531 0.34 +0.3
950,888 - MPMX19_03531 0.34 -1.2
950,888 - MPMX19_03531 0.34 -0.3
951,209 + MPMX19_03531 0.68 -0.3
951,525 + +0.8
951,587 + -1.0
951,588 - -0.0
951,588 - -0.5
951,618 + -0.8
951,618 + -0.5
951,619 - -0.6
951,673 + MPMX19_03532 0.15 -2.0
951,673 + MPMX19_03532 0.15 -0.8
952,066 + -1.4
952,067 - -1.5
952,329 + -0.5
952,329 + +0.4
952,329 + -0.3
952,329 + -1.5
952,330 - -0.7
952,330 - +0.2
952,330 - +0.2
952,330 - -0.8
952,330 - -0.6
952,819 + MPMX19_03533 0.38 +0.4
952,820 - MPMX19_03533 0.38 +0.5
952,820 - MPMX19_03533 0.38 +1.1
952,820 - MPMX19_03533 0.38 -1.1
952,873 + MPMX19_03533 0.42 -1.7
952,873 + MPMX19_03533 0.42 -0.6
952,873 + MPMX19_03533 0.42 -0.7
952,874 - MPMX19_03533 0.42 -1.5
952,903 + MPMX19_03533 0.45 -1.6
952,903 + MPMX19_03533 0.45 -0.3
952,903 + MPMX19_03533 0.45 -0.8
952,904 - MPMX19_03533 0.45 +1.3
952,904 - MPMX19_03533 0.45 +0.4
952,904 - MPMX19_03533 0.45 -0.0
952,904 - MPMX19_03533 0.45 -0.6
952,945 + MPMX19_03533 0.48 -1.1
952,945 + MPMX19_03533 0.48 +0.4
952,945 + MPMX19_03533 0.48 -0.8
952,946 - MPMX19_03533 0.48 +1.6
952,946 - MPMX19_03533 0.48 -1.1
952,972 + MPMX19_03533 0.51 -1.2
952,972 + MPMX19_03533 0.51 -0.3
952,972 + MPMX19_03533 0.51 -0.8
952,972 + MPMX19_03533 0.51 -0.1
952,972 + MPMX19_03533 0.51 -0.8
952,972 + MPMX19_03533 0.51 -0.7
952,972 + MPMX19_03533 0.51 -0.5
952,972 + MPMX19_03533 0.51 -1.0
952,972 + MPMX19_03533 0.51 -1.6
952,972 + MPMX19_03533 0.51 +0.5
952,972 + MPMX19_03533 0.51 +1.0
952,972 + MPMX19_03533 0.51 -0.0
952,972 + MPMX19_03533 0.51 -1.4
952,972 + MPMX19_03533 0.51 -0.2
952,972 + MPMX19_03533 0.51 -1.0
952,972 + MPMX19_03533 0.51 -1.8
952,973 - MPMX19_03533 0.51 -1.2
952,973 - MPMX19_03533 0.51 -0.0
952,973 - MPMX19_03533 0.51 -0.9
952,973 - MPMX19_03533 0.51 -1.3
952,973 - MPMX19_03533 0.51 -0.8
952,973 - MPMX19_03533 0.51 -0.0
952,973 - MPMX19_03533 0.51 +0.4
952,973 - MPMX19_03533 0.51 +0.7
952,973 - MPMX19_03533 0.51 -0.0
952,973 - MPMX19_03533 0.51 -0.1

Or see this region's nucleotide sequence