Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03531

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03529 and MPMX19_03530 are separated by 122 nucleotidesMPMX19_03530 and MPMX19_03531 are separated by 31 nucleotidesMPMX19_03531 and MPMX19_03532 are separated by 94 nucleotidesMPMX19_03532 and MPMX19_03533 are separated by 297 nucleotides MPMX19_03529: MPMX19_03529 - 2,3-diketo-L-gulonate-binding periplasmic protein YiaO, at 948,717 to 949,736 _03529 MPMX19_03530: MPMX19_03530 - HTH-type transcriptional repressor NicS, at 949,859 to 950,536 _03530 MPMX19_03531: MPMX19_03531 - PCP degradation transcriptional activation protein, at 950,568 to 951,506 _03531 MPMX19_03532: MPMX19_03532 - hypothetical protein, at 951,601 to 952,068 _03532 MPMX19_03533: MPMX19_03533 - hypothetical protein, at 952,366 to 953,562 _03533 Position (kb) 950 951 952Strain fitness (log2 ratio) -2 -1 0 1 2at 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.662 kb on + strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.663 kb on - strandat 949.701 kb on + strandat 949.702 kb on - strandat 949.702 kb on - strandat 949.811 kb on + strandat 949.812 kb on - strandat 949.812 kb on - strandat 949.812 kb on - strandat 949.812 kb on - strandat 949.812 kb on - strandat 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.039 kb on + strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.040 kb on - strand, within MPMX19_03530at 950.043 kb on - strand, within MPMX19_03530at 950.043 kb on - strand, within MPMX19_03530at 950.045 kb on + strand, within MPMX19_03530at 950.046 kb on - strand, within MPMX19_03530at 950.046 kb on - strand, within MPMX19_03530at 950.046 kb on - strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.069 kb on + strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.070 kb on - strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.093 kb on + strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.094 kb on - strand, within MPMX19_03530at 950.186 kb on + strand, within MPMX19_03530at 950.186 kb on + strand, within MPMX19_03530at 950.815 kb on + strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.816 kb on - strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.887 kb on + strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 950.888 kb on - strand, within MPMX19_03531at 951.209 kb on + strand, within MPMX19_03531at 951.525 kb on + strandat 951.587 kb on + strandat 951.588 kb on - strandat 951.588 kb on - strandat 951.618 kb on + strandat 951.618 kb on + strandat 951.619 kb on - strandat 951.673 kb on + strand, within MPMX19_03532at 951.673 kb on + strand, within MPMX19_03532at 952.066 kb on + strandat 952.067 kb on - strandat 952.329 kb on + strandat 952.329 kb on + strandat 952.329 kb on + strandat 952.329 kb on + strandat 952.330 kb on - strandat 952.330 kb on - strandat 952.330 kb on - strandat 952.330 kb on - strandat 952.330 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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949,662 + -1.0
949,662 + -1.9
949,662 + -0.6
949,662 + -1.3
949,662 + -1.3
949,662 + -0.7
949,662 + -0.7
949,663 - -0.7
949,663 - +1.0
949,663 - +0.2
949,663 - -1.8
949,663 - -1.4
949,701 + +0.3
949,702 - -1.5
949,702 - +1.2
949,811 + +0.6
949,812 - +0.6
949,812 - -0.2
949,812 - -0.1
949,812 - -0.3
949,812 - -1.4
950,039 + MPMX19_03530 0.27 -1.2
950,039 + MPMX19_03530 0.27 -1.4
950,039 + MPMX19_03530 0.27 -0.3
950,039 + MPMX19_03530 0.27 -1.1
950,039 + MPMX19_03530 0.27 -0.7
950,039 + MPMX19_03530 0.27 -0.3
950,039 + MPMX19_03530 0.27 +0.2
950,039 + MPMX19_03530 0.27 -1.0
950,039 + MPMX19_03530 0.27 -0.5
950,039 + MPMX19_03530 0.27 -2.0
950,040 - MPMX19_03530 0.27 -0.4
950,040 - MPMX19_03530 0.27 -0.0
950,040 - MPMX19_03530 0.27 -0.4
950,040 - MPMX19_03530 0.27 -1.4
950,040 - MPMX19_03530 0.27 +0.7
950,040 - MPMX19_03530 0.27 -0.3
950,040 - MPMX19_03530 0.27 +0.4
950,040 - MPMX19_03530 0.27 -1.6
950,040 - MPMX19_03530 0.27 -1.2
950,043 - MPMX19_03530 0.27 +0.7
950,043 - MPMX19_03530 0.27 +1.3
950,045 + MPMX19_03530 0.27 -0.8
950,046 - MPMX19_03530 0.28 -1.9
950,046 - MPMX19_03530 0.28 -1.1
950,046 - MPMX19_03530 0.28 +0.4
950,069 + MPMX19_03530 0.31 -1.3
950,069 + MPMX19_03530 0.31 -0.3
950,069 + MPMX19_03530 0.31 +1.4
950,069 + MPMX19_03530 0.31 -0.7
950,069 + MPMX19_03530 0.31 -1.6
950,069 + MPMX19_03530 0.31 +1.3
950,069 + MPMX19_03530 0.31 -0.1
950,069 + MPMX19_03530 0.31 -1.5
950,069 + MPMX19_03530 0.31 +0.2
950,070 - MPMX19_03530 0.31 -1.2
950,070 - MPMX19_03530 0.31 -0.6
950,070 - MPMX19_03530 0.31 -1.2
950,070 - MPMX19_03530 0.31 -1.7
950,070 - MPMX19_03530 0.31 -0.7
950,070 - MPMX19_03530 0.31 +1.2
950,070 - MPMX19_03530 0.31 -2.3
950,070 - MPMX19_03530 0.31 -0.7
950,093 + MPMX19_03530 0.35 -1.3
950,093 + MPMX19_03530 0.35 -1.4
950,093 + MPMX19_03530 0.35 +2.0
950,093 + MPMX19_03530 0.35 -0.1
950,093 + MPMX19_03530 0.35 -1.0
950,093 + MPMX19_03530 0.35 -0.6
950,094 - MPMX19_03530 0.35 -1.0
950,094 - MPMX19_03530 0.35 -1.3
950,094 - MPMX19_03530 0.35 +1.0
950,094 - MPMX19_03530 0.35 -1.3
950,094 - MPMX19_03530 0.35 -1.3
950,094 - MPMX19_03530 0.35 -1.0
950,094 - MPMX19_03530 0.35 +0.1
950,094 - MPMX19_03530 0.35 +0.6
950,186 + MPMX19_03530 0.48 -0.7
950,186 + MPMX19_03530 0.48 +1.4
950,815 + MPMX19_03531 0.26 +0.2
950,816 - MPMX19_03531 0.26 -1.3
950,816 - MPMX19_03531 0.26 -0.0
950,816 - MPMX19_03531 0.26 -1.3
950,816 - MPMX19_03531 0.26 +0.8
950,887 + MPMX19_03531 0.34 -0.5
950,887 + MPMX19_03531 0.34 +1.3
950,887 + MPMX19_03531 0.34 -1.0
950,887 + MPMX19_03531 0.34 -1.8
950,888 - MPMX19_03531 0.34 +1.1
950,888 - MPMX19_03531 0.34 +0.3
950,888 - MPMX19_03531 0.34 -1.2
950,888 - MPMX19_03531 0.34 -0.3
951,209 + MPMX19_03531 0.68 -0.3
951,525 + +0.8
951,587 + -1.0
951,588 - -0.0
951,588 - -0.5
951,618 + -0.8
951,618 + -0.5
951,619 - -0.6
951,673 + MPMX19_03532 0.15 -2.0
951,673 + MPMX19_03532 0.15 -0.8
952,066 + -1.4
952,067 - -1.5
952,329 + -0.5
952,329 + +0.4
952,329 + -0.3
952,329 + -1.5
952,330 - -0.7
952,330 - +0.2
952,330 - +0.2
952,330 - -0.8
952,330 - -0.6

Or see this region's nucleotide sequence