Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03520 and MPMX19_03521 are separated by 173 nucleotides MPMX19_03521 and MPMX19_03522 are separated by 88 nucleotides
MPMX19_03520: MPMX19_03520 - Hydrogen peroxide-inducible genes activator, at 938,595 to 939,494
_03520
MPMX19_03521: MPMX19_03521 - Glutathione S-transferase GST-4.5, at 939,668 to 940,279
_03521
MPMX19_03522: MPMX19_03522 - Flavohemoprotein, at 940,368 to 942,467
_03522
Position (kb) 939
940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.814 kb on + strand, within MPMX19_03520 at 938.815 kb on - strand, within MPMX19_03520 at 938.815 kb on - strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.027 kb on + strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.028 kb on - strand, within MPMX19_03520 at 939.073 kb on - strand, within MPMX19_03520 at 939.073 kb on - strand, within MPMX19_03520 at 939.084 kb on + strand, within MPMX19_03520 at 939.293 kb on + strand, within MPMX19_03520 at 939.293 kb on + strand, within MPMX19_03520 at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.500 kb on + strand at 939.501 kb on - strand at 939.501 kb on - strand at 939.510 kb on + strand at 939.510 kb on + strand at 939.510 kb on + strand at 939.511 kb on - strand at 939.511 kb on - strand at 939.511 kb on - strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.512 kb on + strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.513 kb on - strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.677 kb on + strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.678 kb on - strand at 939.723 kb on + strand at 939.724 kb on - strand at 939.724 kb on - strand at 939.878 kb on + strand, within MPMX19_03521 at 939.878 kb on + strand, within MPMX19_03521 at 939.878 kb on + strand, within MPMX19_03521 at 939.878 kb on + strand, within MPMX19_03521 at 939.879 kb on - strand, within MPMX19_03521 at 939.879 kb on - strand, within MPMX19_03521 at 939.980 kb on + strand, within MPMX19_03521 at 939.980 kb on + strand, within MPMX19_03521 at 940.057 kb on + strand, within MPMX19_03521 at 940.058 kb on - strand, within MPMX19_03521 at 940.058 kb on - strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.142 kb on + strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.143 kb on - strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.148 kb on + strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.149 kb on - strand, within MPMX19_03521 at 940.251 kb on + strand at 940.509 kb on + strand at 940.509 kb on + strand at 940.509 kb on + strand at 940.509 kb on + strand at 940.509 kb on + strand at 940.509 kb on + strand at 940.509 kb on + strand at 940.509 kb on + strand at 940.510 kb on - strand at 940.510 kb on - strand at 940.510 kb on - strand at 940.510 kb on - strand at 940.510 kb on - strand at 940.510 kb on - strand at 940.510 kb on - strand at 940.806 kb on + strand, within MPMX19_03522 at 940.806 kb on + strand, within MPMX19_03522 at 940.806 kb on + strand, within MPMX19_03522 at 940.806 kb on + strand, within MPMX19_03522 at 940.806 kb on + strand, within MPMX19_03522 at 940.806 kb on + strand, within MPMX19_03522 at 940.806 kb on + strand, within MPMX19_03522 at 940.806 kb on + strand, within MPMX19_03522 at 940.806 kb on + strand, within MPMX19_03522 at 940.807 kb on - strand, within MPMX19_03522 at 940.807 kb on - strand, within MPMX19_03522 at 940.807 kb on - strand, within MPMX19_03522 at 940.807 kb on - strand, within MPMX19_03522 at 940.807 kb on - strand, within MPMX19_03522 at 940.807 kb on - strand, within MPMX19_03522 at 940.807 kb on - strand, within MPMX19_03522 at 940.807 kb on - strand, within MPMX19_03522 at 940.808 kb on + strand, within MPMX19_03522 at 940.808 kb on + strand, within MPMX19_03522 at 940.808 kb on + strand, within MPMX19_03522 at 940.808 kb on + strand, within MPMX19_03522 at 940.809 kb on - strand, within MPMX19_03522 at 940.809 kb on - strand, within MPMX19_03522 at 940.809 kb on - strand, within MPMX19_03522 at 940.830 kb on + strand, within MPMX19_03522 at 940.830 kb on + strand, within MPMX19_03522 at 940.830 kb on + strand, within MPMX19_03522 at 940.831 kb on - strand, within MPMX19_03522 at 940.831 kb on - strand, within MPMX19_03522 at 940.831 kb on - strand, within MPMX19_03522 at 940.831 kb on - strand, within MPMX19_03522 at 940.941 kb on + strand, within MPMX19_03522 at 940.941 kb on + strand, within MPMX19_03522 at 940.941 kb on + strand, within MPMX19_03522 at 940.941 kb on + strand, within MPMX19_03522 at 940.941 kb on + strand, within MPMX19_03522 at 940.941 kb on + strand, within MPMX19_03522 at 940.941 kb on + strand, within MPMX19_03522 at 940.941 kb on + strand, within MPMX19_03522 at 940.941 kb on + strand, within MPMX19_03522 at 940.941 kb on + strand, within MPMX19_03522 at 940.942 kb on - strand, within MPMX19_03522 at 940.942 kb on - strand, within MPMX19_03522 at 940.942 kb on - strand, within MPMX19_03522 at 940.942 kb on - strand, within MPMX19_03522 at 940.942 kb on - strand, within MPMX19_03522 at 940.942 kb on - strand, within MPMX19_03522 at 941.118 kb on + strand, within MPMX19_03522 at 941.118 kb on + strand, within MPMX19_03522
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 938,814 + MPMX19_03520 0.24 -1.0 938,814 + MPMX19_03520 0.24 -0.9 938,814 + MPMX19_03520 0.24 -0.5 938,814 + MPMX19_03520 0.24 -0.2 938,815 - MPMX19_03520 0.24 -0.1 938,815 - MPMX19_03520 0.24 -0.2 939,027 + MPMX19_03520 0.48 +1.3 939,027 + MPMX19_03520 0.48 -0.3 939,027 + MPMX19_03520 0.48 -0.2 939,027 + MPMX19_03520 0.48 +1.8 939,027 + MPMX19_03520 0.48 -0.5 939,027 + MPMX19_03520 0.48 +0.1 939,028 - MPMX19_03520 0.48 -1.3 939,028 - MPMX19_03520 0.48 -0.3 939,028 - MPMX19_03520 0.48 +2.0 939,028 - MPMX19_03520 0.48 -1.5 939,028 - MPMX19_03520 0.48 -1.8 939,028 - MPMX19_03520 0.48 -0.2 939,028 - MPMX19_03520 0.48 -1.7 939,073 - MPMX19_03520 0.53 +0.3 939,073 - MPMX19_03520 0.53 +0.4 939,084 + MPMX19_03520 0.54 +0.4 939,293 + MPMX19_03520 0.78 -1.4 939,293 + MPMX19_03520 0.78 +0.5 939,500 + -1.3 939,500 + -1.3 939,500 + -0.2 939,500 + -0.5 939,500 + -0.3 939,500 + -0.6 939,501 - -1.2 939,501 - +1.0 939,510 + -0.6 939,510 + +0.8 939,510 + -1.2 939,511 - -1.0 939,511 - -1.0 939,511 - -1.3 939,512 + -1.7 939,512 + -0.3 939,512 + -1.7 939,512 + -0.0 939,512 + -0.0 939,512 + -1.1 939,512 + +0.4 939,512 + -0.4 939,512 + -0.2 939,512 + +0.4 939,512 + -1.2 939,512 + -0.6 939,512 + -0.1 939,512 + -0.3 939,512 + +0.1 939,512 + +0.4 939,512 + -1.0 939,512 + -1.0 939,512 + -0.8 939,512 + -0.5 939,512 + -2.9 939,512 + -0.3 939,513 - -1.7 939,513 - -1.2 939,513 - -1.3 939,513 - -1.3 939,513 - -0.2 939,513 - +0.7 939,513 - -1.4 939,513 - -0.8 939,513 - +0.8 939,513 - -1.0 939,513 - -0.5 939,513 - -1.7 939,513 - +0.2 939,513 - -0.7 939,513 - -0.8 939,513 - +1.3 939,513 - +0.4 939,513 - +0.8 939,513 - -1.6 939,513 - +0.6 939,513 - -2.9 939,513 - -1.2 939,513 - -0.5 939,513 - -0.5 939,513 - -0.6 939,513 - -2.3 939,513 - -0.2 939,513 - +0.2 939,677 + -0.0 939,677 + +0.0 939,677 + -2.3 939,677 + -1.5 939,677 + -0.5 939,677 + -0.5 939,677 + -1.3 939,678 - -0.1 939,678 - +0.8 939,678 - -0.9 939,678 - -0.0 939,678 - -1.6 939,678 - -0.8 939,678 - +0.4 939,678 - -0.5 939,678 - -0.2 939,678 - -0.6 939,723 + +0.6 939,724 - -1.4 939,724 - -0.7 939,878 + MPMX19_03521 0.34 -2.3 939,878 + MPMX19_03521 0.34 -0.1 939,878 + MPMX19_03521 0.34 -1.5 939,878 + MPMX19_03521 0.34 +0.2 939,879 - MPMX19_03521 0.34 +0.5 939,879 - MPMX19_03521 0.34 -1.9 939,980 + MPMX19_03521 0.51 -2.5 939,980 + MPMX19_03521 0.51 -0.8 940,057 + MPMX19_03521 0.64 -1.0 940,058 - MPMX19_03521 0.64 -0.6 940,058 - MPMX19_03521 0.64 +0.4 940,142 + MPMX19_03521 0.77 -0.7 940,142 + MPMX19_03521 0.77 -1.4 940,142 + MPMX19_03521 0.77 +0.4 940,142 + MPMX19_03521 0.77 -1.2 940,142 + MPMX19_03521 0.77 -1.2 940,143 - MPMX19_03521 0.78 -0.5 940,143 - MPMX19_03521 0.78 +1.0 940,143 - MPMX19_03521 0.78 +0.2 940,143 - MPMX19_03521 0.78 -0.2 940,143 - MPMX19_03521 0.78 -0.5 940,143 - MPMX19_03521 0.78 -0.2 940,143 - MPMX19_03521 0.78 +0.4 940,143 - MPMX19_03521 0.78 -1.8 940,148 + MPMX19_03521 0.78 -0.4 940,148 + MPMX19_03521 0.78 -0.9 940,148 + MPMX19_03521 0.78 -0.8 940,148 + MPMX19_03521 0.78 -0.8 940,148 + MPMX19_03521 0.78 -0.6 940,148 + MPMX19_03521 0.78 -1.3 940,149 - MPMX19_03521 0.79 -3.0 940,149 - MPMX19_03521 0.79 -0.2 940,149 - MPMX19_03521 0.79 -0.3 940,149 - MPMX19_03521 0.79 -1.3 940,149 - MPMX19_03521 0.79 +0.8 940,149 - MPMX19_03521 0.79 +0.7 940,149 - MPMX19_03521 0.79 +2.0 940,149 - MPMX19_03521 0.79 -0.6 940,149 - MPMX19_03521 0.79 -1.7 940,251 + -1.9 940,509 + -1.3 940,509 + +0.7 940,509 + +0.3 940,509 + +0.1 940,509 + -0.3 940,509 + -0.5 940,509 + +0.5 940,509 + -2.5 940,510 - -1.5 940,510 - -0.7 940,510 - +0.6 940,510 - +0.5 940,510 - -0.1 940,510 - -1.5 940,510 - -0.2 940,806 + MPMX19_03522 0.21 -0.0 940,806 + MPMX19_03522 0.21 +0.3 940,806 + MPMX19_03522 0.21 -1.2 940,806 + MPMX19_03522 0.21 -0.7 940,806 + MPMX19_03522 0.21 -0.2 940,806 + MPMX19_03522 0.21 +0.6 940,806 + MPMX19_03522 0.21 -0.5 940,806 + MPMX19_03522 0.21 -1.8 940,806 + MPMX19_03522 0.21 -0.1 940,807 - MPMX19_03522 0.21 -0.6 940,807 - MPMX19_03522 0.21 -1.6 940,807 - MPMX19_03522 0.21 -0.7 940,807 - MPMX19_03522 0.21 +1.0 940,807 - MPMX19_03522 0.21 +0.0 940,807 - MPMX19_03522 0.21 +0.8 940,807 - MPMX19_03522 0.21 -0.8 940,807 - MPMX19_03522 0.21 -0.6 940,808 + MPMX19_03522 0.21 -0.2 940,808 + MPMX19_03522 0.21 -0.2 940,808 + MPMX19_03522 0.21 +0.5 940,808 + MPMX19_03522 0.21 -0.3 940,809 - MPMX19_03522 0.21 +0.4 940,809 - MPMX19_03522 0.21 +0.5 940,809 - MPMX19_03522 0.21 -0.5 940,830 + MPMX19_03522 0.22 -2.2 940,830 + MPMX19_03522 0.22 -2.1 940,830 + MPMX19_03522 0.22 -0.4 940,831 - MPMX19_03522 0.22 -1.8 940,831 - MPMX19_03522 0.22 -0.0 940,831 - MPMX19_03522 0.22 +0.5 940,831 - MPMX19_03522 0.22 +0.5 940,941 + MPMX19_03522 0.27 -1.0 940,941 + MPMX19_03522 0.27 -1.8 940,941 + MPMX19_03522 0.27 +0.3 940,941 + MPMX19_03522 0.27 +1.0 940,941 + MPMX19_03522 0.27 -0.9 940,941 + MPMX19_03522 0.27 -0.0 940,941 + MPMX19_03522 0.27 -0.8 940,941 + MPMX19_03522 0.27 +0.0 940,941 + MPMX19_03522 0.27 -0.5 940,941 + MPMX19_03522 0.27 -0.6 940,942 - MPMX19_03522 0.27 -1.4 940,942 - MPMX19_03522 0.27 -0.3 940,942 - MPMX19_03522 0.27 -1.0 940,942 - MPMX19_03522 0.27 -0.2 940,942 - MPMX19_03522 0.27 +0.1 940,942 - MPMX19_03522 0.27 -1.0 941,118 + MPMX19_03522 0.36 -0.8 941,118 + MPMX19_03522 0.36 -1.1
Or see this region's nucleotide sequence