Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03500 and MPMX19_03501 are separated by 120 nucleotides MPMX19_03501 and MPMX19_03502 are separated by 44 nucleotides MPMX19_03502 and MPMX19_03503 are separated by 23 nucleotides MPMX19_03503 and MPMX19_03504 are separated by 483 nucleotides
MPMX19_03500: MPMX19_03500 - Sulfur carrier protein FdhD, at 918,791 to 919,627
_03500
MPMX19_03501: MPMX19_03501 - hypothetical protein, at 919,748 to 920,326
_03501
MPMX19_03502: MPMX19_03502 - Hydrogenase maturation factor HybG, at 920,371 to 920,652
_03502
MPMX19_03503: MPMX19_03503 - Hydrogenase maturation factor HybF, at 920,676 to 921,017
_03503
MPMX19_03504: MPMX19_03504 - Sulfur carrier protein FdhD, at 921,501 to 922,283
_03504
Position (kb) 920
921 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 919.598 kb on + strand at 919.598 kb on + strand at 919.598 kb on + strand at 919.599 kb on - strand at 919.599 kb on - strand at 919.599 kb on - strand at 919.664 kb on + strand at 919.664 kb on + strand at 919.890 kb on + strand, within MPMX19_03501 at 920.855 kb on + strand, within MPMX19_03503 at 920.856 kb on - strand, within MPMX19_03503 at 920.856 kb on - strand, within MPMX19_03503 at 921.046 kb on + strand at 921.152 kb on - strand at 921.337 kb on + strand at 921.338 kb on - strand at 921.414 kb on - strand at 921.437 kb on + strand at 921.437 kb on + strand at 921.437 kb on + strand at 921.438 kb on - strand at 921.438 kb on - strand at 921.582 kb on + strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504 at 921.583 kb on - strand, within MPMX19_03504
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 919,598 + +0.6 919,598 + -0.6 919,598 + +0.5 919,599 - +1.2 919,599 - -0.6 919,599 - -0.5 919,664 + -0.8 919,664 + -1.1 919,890 + MPMX19_03501 0.25 -0.7 920,855 + MPMX19_03503 0.52 -0.8 920,856 - MPMX19_03503 0.53 -1.2 920,856 - MPMX19_03503 0.53 -2.2 921,046 + -1.1 921,152 - -0.3 921,337 + -0.8 921,338 - -1.9 921,414 - +0.0 921,437 + +3.0 921,437 + -0.2 921,437 + -2.0 921,438 - -0.4 921,438 - -0.2 921,582 + MPMX19_03504 0.10 +0.2 921,583 - MPMX19_03504 0.10 -1.3 921,583 - MPMX19_03504 0.10 +0.1 921,583 - MPMX19_03504 0.10 -0.7 921,583 - MPMX19_03504 0.10 -1.0 921,583 - MPMX19_03504 0.10 -1.0 921,583 - MPMX19_03504 0.10 -0.4
Or see this region's nucleotide sequence